Clone BO17893 Report

Search the DGRC for BO17893

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptmid-RA
Protein status:BO17893.pep: Imported from assembly
Sequenced Size:1774

Clone Sequence Records

BO17893.3prime Sequence

787 bp (707 high quality bases) assembled on 2006-10-13

> BO17893.3prime
ATGGTCTAGAAAGCTTGCGTGGGCGGGGCTGCGTGAGGCGTTTACCGCGG
GTGGCGAACCGGCGGCAGAGGAGGGTGGCCCCTGACCGCCTGGCAGTTGG
TACGGACTGAACCGCTGATACTGGCGCGGTCGCATATCGGGCGACGGCGA
TCCCGACGACGTCGACGAGGGCGTGGATGCAGTGGGCGGGGGTGGGGGCG
TCCGGTTGGCGGCCATCGCTGCGGCTGCCGCCTGCGCCTGCGCTTGGGCC
TGAGCGGCGGCTTGAGCGGCGGCAGCTTGCTGATTGGCGCTGGCCAAAAA
GCCGGCGGTAAGTTGGGGCCACTGCTGCTGGAACATGTGGAAGGCGCCCA
GGCCGGGGGGTGGCGGAGGTGGTCCGGCTGCCGCTGCTGCCGCTTGGTAC
ATTTGCGGCATCATCAGCTGGGCATAGGGGGAGTTGCCGCCAAACATTTG
CAGATGCTGGCGTGCCTTCTCGAACAGCGCCATCGAGGAGGGATCACCCT
GAGCGGCAAACTGTTGCATCAGCGGATCGGGAAAGAGGCGCAGTGGCGAG
CGGAGCTGCTGCTCCAGGAGCAGCGCCTCCATCGGATCGCGATCGAAGTC
GGTGAGGCGGGAGGAGTCGCGGAAGCCCTTGGCGAACGGATTCGAATCGA
TCTTCAGCTTGGTGATCAGCTGATTCTGATAGGCCGTCACCGCGGTGAAT
ACGGTTTCCGGGAATACGTAGGTCTTGTGATCCAAGTCCTGCAATTCCTT
GGGAATCGACGGAATGCTCTGTCCATGGCTCCAACGC

BO17893.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6634-PA 1743 mid-RA 972..1740 787..19 3795 99.7 Minus
CG6604-PA 1983 H15-RA 1708..1760 330..278 165 92.4 Minus
CG6604-PA 1983 H15-RA 1318..1361 714..671 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
mid-RA 2920 CG6634-RA 1251..2019 787..19 3815 99.7 Minus
mid-RB 2139 CG6634-RB 1251..2019 787..19 3815 99.7 Minus
H15-RB 2926 CG6604-RB 1495..2011 781..271 570 75.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5465941..5466709 787..19 3815 99.7 Minus
2L 23513712 2L 5414018..5414207 781..592 410 81.1 Minus
2L 23513712 2L 5415619..5415678 330..271 210 90 Minus
Blast to na_te.dros performed on 2015-02-13 00:41:24 has no hits.

BO17893.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:56 Download gff for BO17893.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6634-PA 972..1743 15..787 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:42:18 Download gff for BO17893.3prime
Subject Subject Range Query Range Percent Splice Strand
mid-RB 1251..2025 11..787 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:56 Download gff for BO17893.3prime
Subject Subject Range Query Range Percent Splice Strand
mid-RB 1251..2025 11..787 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:56 Download gff for BO17893.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5465941..5466715 11..787 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:42:18 Download gff for BO17893.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5465941..5466715 11..787 99   Minus

BO17893.5prime Sequence

750 bp (705 high quality bases) assembled on 2006-10-13

> BO17893.5prime
GAAGTTATCAGTCGACATGCTGGTTGGATCTCATCCGTATTTGTGCAACG
GGGTGCCCGCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACA
ACGGCTAGCAAAAGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGC
CATCATGGCTCGCGAAGATGCCTCCAGTCGGGAGTCCTCCATTCGCAGTG
CAAGTCCCATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGTCGACTGC
AGCGATGCCGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCA
GCACCACCAGCATCACCAGCACCACCACAATAACAACAATAACAACAACA
ACAACAATGTGGCACACAAGAGTCGCAACAGCGGTGGCGCCGTGGCACAA
ACAGCTTCCGCCGAATCCCAACTGAACACCAGCTCGACCAGCAGCCAAGG
ACGCTGCTCCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGC
GTTTAACACCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGC
AATTGCGACGATCTGAAGCCGGTGCAGTGCCATCTGGAGACCAAAGAGCT
GTGGGATCGCTTTCACGATCTCGGCACCGAGATGATCATCACCAAAACGG
GCAGACGCATGTTCCCCACTGTGCGCGTCAGTTTCTCGGGTCCGCTGAGG
CAAATCCAGCCCGCCGATCGCTACGCCGTCCTCATGGACATCATCCCCAT

BO17893.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6634-PA 1743 mid-RA 1..734 17..750 3670 100 Plus
CG5575-PA 1806 ken-RA 745..803 299..357 145 89.8 Plus
CG6604-PA 1983 H15-RA 355..386 221..252 135 96.8 Plus
CG6604-PA 1983 H15-RA 889..950 632..693 135 88.7 Plus
CG11202-PA 2100 org-1-RA 637..683 623..669 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
mid-RA 2920 CG6634-RA 280..1013 17..750 3670 100 Plus
mid-RB 2139 CG6634-RB 280..1013 17..750 3670 100 Plus
H15-RB 2926 CG6604-RB 1031..1230 530..729 445 81.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5463819..5464269 204..654 2255 100 Plus
2L 23513712 2L 5461918..5462106 17..205 945 100 Plus
2L 23513712 2L 5465217..5465315 652..750 495 100 Plus
2L 23513712 2L 5407693..5407817 530..654 280 81.6 Plus
X 23542271 X 8451685..8451770 669..584 205 82.6 Minus
2R 25286936 2R 23875716..23875774 299..357 205 89.8 Plus
2L 23513712 2L 5413009..5413086 652..729 180 82.1 Plus
Blast to na_te.dros performed 2015-02-10 22:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1531..1613 291..380 145 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2491..2546 291..345 133 73.2 Plus

BO17893.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:57 Download gff for BO17893.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6634-PA 1..734 17..750 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:50:37 Download gff for BO17893.5prime
Subject Subject Range Query Range Percent Splice Strand
mid-RB 275..1013 12..750 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:17 Download gff for BO17893.5prime
Subject Subject Range Query Range Percent Splice Strand
mid-RB 275..1013 12..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:17 Download gff for BO17893.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5461913..5462104 12..203 98 -> Plus
2L 5463819..5464269 204..654 100 -> Plus
2L 5465220..5465315 655..750 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:50:37 Download gff for BO17893.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5461913..5462104 12..203 98 -> Plus
arm_2L 5463819..5464269 204..654 100 -> Plus
arm_2L 5465220..5465315 655..750 100   Plus

BO17893.complete Sequence

1774 bp assembled on 2008-08-14

GenBank Submission: FJ634249

> BO17893.complete
GAAGTTATCAGTCGACATGCTGGTTGGATCTCATCCGTATTTGTGCAACG
GGGTGCCCGCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACA
ACGGCTAGCAAAAGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGC
CATCATGGCTCGCGAAGATGCCTCCAGTCGGGAGTCCTCCATTCGCAGTG
CAAGTCCCATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGTCGACTGC
AGCGATGCCGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCA
GCACCACCAGCATCACCAGCACCACCACAATAACAACAATAACAACAACA
ACAACAATGTGGCACACAAGAGTCGCAACAGCGGTGGCGCCGTGGCACAA
ACAGCTTCCGCCGAATCCCAACTGAACACCAGCTCGACCAGCAGCCAAGG
ACGCTGCTCCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGC
GTTTAACACCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGC
AATTGCGACGATCTGAAGCCGGTGCAGTGCCATCTGGAGACCAAAGAGCT
GTGGGATCGCTTTCACGATCTCGGCACCGAGATGATCATCACCAAAACGG
GCAGACGCATGTTCCCCACTGTGCGCGTCAGTTTCTCGGGTCCGCTGAGG
CAAATCCAGCCCGCCGATCGCTACGCCGTCCTCATGGACATCATCCCCAT
GGACTCGAAGCGGTATCGGTACGCCTACCATCGCTCCGCATGGCTGGTGG
CCGGCAAGGCCGACCCCGCCCCCCCAGCACGCCTCTACGCCCATCCTGAC
AGTCCCTTCAGCTGCGAGGCGCTCCGCAAACAAGTTATCTCCTTCGAGAA
GGTGAAGCTGACTAATAACGAAATGGATAAGAACGGACAGATCGTTTTGA
ACTCGATGCATCGCTACCAGCCCAGAATTCATTTGGTGCGTTTGAGCCAT
GGACAGAGCATTCCGTCGAATCCCAAGGAATTGCAGGACTTGGATCACAA
GACCTACGTATTCCCGGAAACCGTATTCACCGCGGTGACGGCCTATCAGA
ATCAGCTGATCACCAAGCTGAAGATCGATTCGAATCCGTTCGCCAAGGGC
TTCCGCGACTCCTCCCGCCTCACCGACTTCGATCGCGATCCGATGGAGGC
GCTGCTCCTGGAGCAGCAGCTCCGCTCGCCACTGCGCCTCTTTCCCGATC
CGCTGATGCAACAGTTTGCCGCTCAGGGTGATCCCTCCTCGATGGCGCTG
TTCGAGAAGGCACGCCAGCATCTGCAAATGTTTGGCGGCAACTCCCCCTA
TGCCCAGCTGATGATGCCGCAAATGTACCAAGCGGCAGCAGCGGCAGCCG
GACCACCTCCGCCACCCCCCGGCCTGGGCGCCTTCCACATGTTCCAGCAG
CAGTGGCCCCAACTTACCGCCGGCTTTTTGGCCAGCGCCAATCAGCAAGC
TGCCGCCGCTCAAGCCGCCGCTCAGGCCCAAGCGCAGGCGCAGGCGGCAG
CCGCAGCGATGGCCGCCAACCGGACGCCCCCACCCCCGCCCACTGCATCC
ACGCCCTCGTCGACGTCGTCGGGATCGCCGTCGCCCGATATGCGACCGCG
CCAGTATCAGCGGTTCAGTCCGTACCAACTGCCAGGCGGTCAGGGGCCAC
CCTCCTCTGCCGCCGGTTCGCCACCCGCGGTAAACGCCTCACGCAGCCCC
GCCCACGCAAGCTTTCTAGACCAT

BO17893.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
mid-RA 1743 CG6634-PA 1..1740 17..1756 8700 100 Plus
mid-RB 1743 CG6634-PB 1..1740 17..1756 8700 100 Plus
H15-RB 1980 CG6604-PB 784..1595 530..1335 1200 77.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
mid-RA 2920 CG6634-RA 280..2019 17..1756 8700 100 Plus
mid-RB 2139 CG6634-RB 280..2019 17..1756 8700 100 Plus
H15-RB 2926 CG6604-RB 1031..1842 530..1335 1200 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5465891..5466709 938..1756 4095 100 Plus
2L 23513712 2L 5463819..5464269 204..654 2255 100 Plus
2L 23513712 2L 5465217..5465505 652..940 1445 100 Plus
2L 23513712 2L 5461918..5462106 17..205 945 100 Plus
2L 23513712 2L 5413962..5414207 938..1183 540 81.3 Plus
2L 23513712 2L 5413009..5413297 652..940 365 75.1 Plus
2L 23513712 2L 5407693..5407817 530..654 280 81.6 Plus
2L 23513712 2L 5415619..5415678 1445..1504 210 90 Plus
X 23542271 X 8451685..8451770 669..584 205 82.6 Minus
2R 25286936 2R 23875716..23875774 299..357 205 89.8 Plus
Blast to na_te.dros performed 2014-11-27 14:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1531..1613 291..380 145 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2491..2546 291..345 133 73.2 Plus

BO17893.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:45 Download gff for BO17893.complete
Subject Subject Range Query Range Percent Splice Strand
mid-RA 273..2023 12..1764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:15 Download gff for BO17893.complete
Subject Subject Range Query Range Percent Splice Strand
mid-RB 280..2019 17..1758 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:58 Download gff for BO17893.complete
Subject Subject Range Query Range Percent Splice Strand
mid-RA 278..2017 17..1758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:10 Download gff for BO17893.complete
Subject Subject Range Query Range Percent Splice Strand
mid-RB 280..2019 17..1758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:10 Download gff for BO17893.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5461918..5462104 17..203 100 -> Plus
2L 5463819..5464269 204..654 100 -> Plus
2L 5465220..5465505 655..940 100 -> Plus
2L 5465894..5466709 941..1758 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:15 Download gff for BO17893.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5461918..5462104 17..203 100 -> Plus
arm_2L 5463819..5464269 204..654 100 -> Plus
arm_2L 5465220..5465505 655..940 100 -> Plus
arm_2L 5465894..5466709 941..1758 99   Plus

BO17893.pep Sequence

Translation from 16 to 1774

> BO17893.pep
MLVGSHPYLCNGVPAAPAAPNASGQTTTTASKSAAGSATDFSIAAIMARE
DASSRESSIRSASPISVEDEVDVDVVDCSDAEEPPTKARRLNHHQHHQHH
QHHHNNNNNNNNNNVAHKSRNSGGAVAQTASAESQLNTSSTSSQGRCSTP
PQSPGTEDSEERLTPEPVQKAPKIVGSCNCDDLKPVQCHLETKELWDRFH
DLGTEMIITKTGRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRY
RYAYHRSAWLVAGKADPAPPARLYAHPDSPFSCEALRKQVISFEKVKLTN
NEMDKNGQIVLNSMHRYQPRIHLVRLSHGQSIPSNPKELQDLDHKTYVFP
ETVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFDRDPMEALLLEQ
QLRSPLRLFPDPLMQQFAAQGDPSSMALFEKARQHLQMFGGNSPYAQLMM
PQMYQAAAAAAGPPPPPPGLGAFHMFQQQWPQLTAGFLASANQQAAAAQA
AAQAQAQAQAAAAAMAANRTPPPPPTASTPSSTSSGSPSPDMRPRQYQRF
SPYQLPGGQGPPSSAAGSPPAVNASRSPAHASFLDH

BO17893.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
mid-PA 580 CG6634-PA 1..580 1..580 3047 100 Plus
mid-PB 580 CG6634-PB 1..580 1..580 3047 100 Plus
H15-PB 659 CG6604-PB 78..659 38..578 1717 60.6 Plus
H15-PA 660 CG6604-PA 78..660 38..578 1707 60.5 Plus
org-1-PB 699 CG11202-PB 200..592 190..576 620 40 Plus