Clone Sequence Records
BO17893.3prime Sequence
787 bp (707 high quality bases) assembled on 2006-10-13
> BO17893.3prime
ATGGTCTAGAAAGCTTGCGTGGGCGGGGCTGCGTGAGGCGTTTACCGCGG
GTGGCGAACCGGCGGCAGAGGAGGGTGGCCCCTGACCGCCTGGCAGTTGG
TACGGACTGAACCGCTGATACTGGCGCGGTCGCATATCGGGCGACGGCGA
TCCCGACGACGTCGACGAGGGCGTGGATGCAGTGGGCGGGGGTGGGGGCG
TCCGGTTGGCGGCCATCGCTGCGGCTGCCGCCTGCGCCTGCGCTTGGGCC
TGAGCGGCGGCTTGAGCGGCGGCAGCTTGCTGATTGGCGCTGGCCAAAAA
GCCGGCGGTAAGTTGGGGCCACTGCTGCTGGAACATGTGGAAGGCGCCCA
GGCCGGGGGGTGGCGGAGGTGGTCCGGCTGCCGCTGCTGCCGCTTGGTAC
ATTTGCGGCATCATCAGCTGGGCATAGGGGGAGTTGCCGCCAAACATTTG
CAGATGCTGGCGTGCCTTCTCGAACAGCGCCATCGAGGAGGGATCACCCT
GAGCGGCAAACTGTTGCATCAGCGGATCGGGAAAGAGGCGCAGTGGCGAG
CGGAGCTGCTGCTCCAGGAGCAGCGCCTCCATCGGATCGCGATCGAAGTC
GGTGAGGCGGGAGGAGTCGCGGAAGCCCTTGGCGAACGGATTCGAATCGA
TCTTCAGCTTGGTGATCAGCTGATTCTGATAGGCCGTCACCGCGGTGAAT
ACGGTTTCCGGGAATACGTAGGTCTTGTGATCCAAGTCCTGCAATTCCTT
GGGAATCGACGGAATGCTCTGTCCATGGCTCCAACGC
BO17893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6634-PA | 1743 | mid-RA | 972..1740 | 787..19 | 3795 | 99.7 | Minus |
CG6604-PA | 1983 | H15-RA | 1708..1760 | 330..278 | 165 | 92.4 | Minus |
CG6604-PA | 1983 | H15-RA | 1318..1361 | 714..671 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mid-RA | 2920 | CG6634-RA | 1251..2019 | 787..19 | 3815 | 99.7 | Minus |
mid-RB | 2139 | CG6634-RB | 1251..2019 | 787..19 | 3815 | 99.7 | Minus |
H15-RB | 2926 | CG6604-RB | 1495..2011 | 781..271 | 570 | 75.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5465941..5466709 | 787..19 | 3815 | 99.7 | Minus |
2L | 23513712 | 2L | 5414018..5414207 | 781..592 | 410 | 81.1 | Minus |
2L | 23513712 | 2L | 5415619..5415678 | 330..271 | 210 | 90 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:41:24 has no hits.
BO17893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:56 Download gff for
BO17893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6634-PA | 972..1743 | 15..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:42:18 Download gff for
BO17893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 1251..2025 | 11..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:56 Download gff for
BO17893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 1251..2025 | 11..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:56 Download gff for
BO17893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5465941..5466715 | 11..787 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:42:18 Download gff for
BO17893.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5465941..5466715 | 11..787 | 99 | | Minus |
BO17893.5prime Sequence
750 bp (705 high quality bases) assembled on 2006-10-13
> BO17893.5prime
GAAGTTATCAGTCGACATGCTGGTTGGATCTCATCCGTATTTGTGCAACG
GGGTGCCCGCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACA
ACGGCTAGCAAAAGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGC
CATCATGGCTCGCGAAGATGCCTCCAGTCGGGAGTCCTCCATTCGCAGTG
CAAGTCCCATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGTCGACTGC
AGCGATGCCGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCA
GCACCACCAGCATCACCAGCACCACCACAATAACAACAATAACAACAACA
ACAACAATGTGGCACACAAGAGTCGCAACAGCGGTGGCGCCGTGGCACAA
ACAGCTTCCGCCGAATCCCAACTGAACACCAGCTCGACCAGCAGCCAAGG
ACGCTGCTCCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGC
GTTTAACACCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGC
AATTGCGACGATCTGAAGCCGGTGCAGTGCCATCTGGAGACCAAAGAGCT
GTGGGATCGCTTTCACGATCTCGGCACCGAGATGATCATCACCAAAACGG
GCAGACGCATGTTCCCCACTGTGCGCGTCAGTTTCTCGGGTCCGCTGAGG
CAAATCCAGCCCGCCGATCGCTACGCCGTCCTCATGGACATCATCCCCAT
BO17893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6634-PA | 1743 | mid-RA | 1..734 | 17..750 | 3670 | 100 | Plus |
CG5575-PA | 1806 | ken-RA | 745..803 | 299..357 | 145 | 89.8 | Plus |
CG6604-PA | 1983 | H15-RA | 355..386 | 221..252 | 135 | 96.8 | Plus |
CG6604-PA | 1983 | H15-RA | 889..950 | 632..693 | 135 | 88.7 | Plus |
CG11202-PA | 2100 | org-1-RA | 637..683 | 623..669 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mid-RA | 2920 | CG6634-RA | 280..1013 | 17..750 | 3670 | 100 | Plus |
mid-RB | 2139 | CG6634-RB | 280..1013 | 17..750 | 3670 | 100 | Plus |
H15-RB | 2926 | CG6604-RB | 1031..1230 | 530..729 | 445 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5463819..5464269 | 204..654 | 2255 | 100 | Plus |
2L | 23513712 | 2L | 5461918..5462106 | 17..205 | 945 | 100 | Plus |
2L | 23513712 | 2L | 5465217..5465315 | 652..750 | 495 | 100 | Plus |
2L | 23513712 | 2L | 5407693..5407817 | 530..654 | 280 | 81.6 | Plus |
X | 23542271 | X | 8451685..8451770 | 669..584 | 205 | 82.6 | Minus |
2R | 25286936 | 2R | 23875716..23875774 | 299..357 | 205 | 89.8 | Plus |
2L | 23513712 | 2L | 5413009..5413086 | 652..729 | 180 | 82.1 | Plus |
Blast to na_te.dros performed 2015-02-10 22:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1613 | 291..380 | 145 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2491..2546 | 291..345 | 133 | 73.2 | Plus |
BO17893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:57 Download gff for
BO17893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6634-PA | 1..734 | 17..750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:50:37 Download gff for
BO17893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 275..1013 | 12..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:17 Download gff for
BO17893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 275..1013 | 12..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:17 Download gff for
BO17893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5461913..5462104 | 12..203 | 98 | -> | Plus |
2L | 5463819..5464269 | 204..654 | 100 | -> | Plus |
2L | 5465220..5465315 | 655..750 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:50:37 Download gff for
BO17893.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5461913..5462104 | 12..203 | 98 | -> | Plus |
arm_2L | 5463819..5464269 | 204..654 | 100 | -> | Plus |
arm_2L | 5465220..5465315 | 655..750 | 100 | | Plus |
BO17893.complete Sequence
1774 bp assembled on 2008-08-14
GenBank Submission: FJ634249
> BO17893.complete
GAAGTTATCAGTCGACATGCTGGTTGGATCTCATCCGTATTTGTGCAACG
GGGTGCCCGCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACA
ACGGCTAGCAAAAGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGC
CATCATGGCTCGCGAAGATGCCTCCAGTCGGGAGTCCTCCATTCGCAGTG
CAAGTCCCATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGTCGACTGC
AGCGATGCCGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCA
GCACCACCAGCATCACCAGCACCACCACAATAACAACAATAACAACAACA
ACAACAATGTGGCACACAAGAGTCGCAACAGCGGTGGCGCCGTGGCACAA
ACAGCTTCCGCCGAATCCCAACTGAACACCAGCTCGACCAGCAGCCAAGG
ACGCTGCTCCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGC
GTTTAACACCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGC
AATTGCGACGATCTGAAGCCGGTGCAGTGCCATCTGGAGACCAAAGAGCT
GTGGGATCGCTTTCACGATCTCGGCACCGAGATGATCATCACCAAAACGG
GCAGACGCATGTTCCCCACTGTGCGCGTCAGTTTCTCGGGTCCGCTGAGG
CAAATCCAGCCCGCCGATCGCTACGCCGTCCTCATGGACATCATCCCCAT
GGACTCGAAGCGGTATCGGTACGCCTACCATCGCTCCGCATGGCTGGTGG
CCGGCAAGGCCGACCCCGCCCCCCCAGCACGCCTCTACGCCCATCCTGAC
AGTCCCTTCAGCTGCGAGGCGCTCCGCAAACAAGTTATCTCCTTCGAGAA
GGTGAAGCTGACTAATAACGAAATGGATAAGAACGGACAGATCGTTTTGA
ACTCGATGCATCGCTACCAGCCCAGAATTCATTTGGTGCGTTTGAGCCAT
GGACAGAGCATTCCGTCGAATCCCAAGGAATTGCAGGACTTGGATCACAA
GACCTACGTATTCCCGGAAACCGTATTCACCGCGGTGACGGCCTATCAGA
ATCAGCTGATCACCAAGCTGAAGATCGATTCGAATCCGTTCGCCAAGGGC
TTCCGCGACTCCTCCCGCCTCACCGACTTCGATCGCGATCCGATGGAGGC
GCTGCTCCTGGAGCAGCAGCTCCGCTCGCCACTGCGCCTCTTTCCCGATC
CGCTGATGCAACAGTTTGCCGCTCAGGGTGATCCCTCCTCGATGGCGCTG
TTCGAGAAGGCACGCCAGCATCTGCAAATGTTTGGCGGCAACTCCCCCTA
TGCCCAGCTGATGATGCCGCAAATGTACCAAGCGGCAGCAGCGGCAGCCG
GACCACCTCCGCCACCCCCCGGCCTGGGCGCCTTCCACATGTTCCAGCAG
CAGTGGCCCCAACTTACCGCCGGCTTTTTGGCCAGCGCCAATCAGCAAGC
TGCCGCCGCTCAAGCCGCCGCTCAGGCCCAAGCGCAGGCGCAGGCGGCAG
CCGCAGCGATGGCCGCCAACCGGACGCCCCCACCCCCGCCCACTGCATCC
ACGCCCTCGTCGACGTCGTCGGGATCGCCGTCGCCCGATATGCGACCGCG
CCAGTATCAGCGGTTCAGTCCGTACCAACTGCCAGGCGGTCAGGGGCCAC
CCTCCTCTGCCGCCGGTTCGCCACCCGCGGTAAACGCCTCACGCAGCCCC
GCCCACGCAAGCTTTCTAGACCAT
BO17893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mid-RA | 1743 | CG6634-PA | 1..1740 | 17..1756 | 8700 | 100 | Plus |
mid-RB | 1743 | CG6634-PB | 1..1740 | 17..1756 | 8700 | 100 | Plus |
H15-RB | 1980 | CG6604-PB | 784..1595 | 530..1335 | 1200 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mid-RA | 2920 | CG6634-RA | 280..2019 | 17..1756 | 8700 | 100 | Plus |
mid-RB | 2139 | CG6634-RB | 280..2019 | 17..1756 | 8700 | 100 | Plus |
H15-RB | 2926 | CG6604-RB | 1031..1842 | 530..1335 | 1200 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5465891..5466709 | 938..1756 | 4095 | 100 | Plus |
2L | 23513712 | 2L | 5463819..5464269 | 204..654 | 2255 | 100 | Plus |
2L | 23513712 | 2L | 5465217..5465505 | 652..940 | 1445 | 100 | Plus |
2L | 23513712 | 2L | 5461918..5462106 | 17..205 | 945 | 100 | Plus |
2L | 23513712 | 2L | 5413962..5414207 | 938..1183 | 540 | 81.3 | Plus |
2L | 23513712 | 2L | 5413009..5413297 | 652..940 | 365 | 75.1 | Plus |
2L | 23513712 | 2L | 5407693..5407817 | 530..654 | 280 | 81.6 | Plus |
2L | 23513712 | 2L | 5415619..5415678 | 1445..1504 | 210 | 90 | Plus |
X | 23542271 | X | 8451685..8451770 | 669..584 | 205 | 82.6 | Minus |
2R | 25286936 | 2R | 23875716..23875774 | 299..357 | 205 | 89.8 | Plus |
Blast to na_te.dros performed 2014-11-27 14:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1613 | 291..380 | 145 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2491..2546 | 291..345 | 133 | 73.2 | Plus |
BO17893.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:45 Download gff for
BO17893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RA | 273..2023 | 12..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:15 Download gff for
BO17893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 280..2019 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:58 Download gff for
BO17893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RA | 278..2017 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:10 Download gff for
BO17893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mid-RB | 280..2019 | 17..1758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:10 Download gff for
BO17893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5461918..5462104 | 17..203 | 100 | -> | Plus |
2L | 5463819..5464269 | 204..654 | 100 | -> | Plus |
2L | 5465220..5465505 | 655..940 | 100 | -> | Plus |
2L | 5465894..5466709 | 941..1758 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:15 Download gff for
BO17893.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5461918..5462104 | 17..203 | 100 | -> | Plus |
arm_2L | 5463819..5464269 | 204..654 | 100 | -> | Plus |
arm_2L | 5465220..5465505 | 655..940 | 100 | -> | Plus |
arm_2L | 5465894..5466709 | 941..1758 | 99 | | Plus |
BO17893.pep Sequence
Translation from 16 to 1774
> BO17893.pep
MLVGSHPYLCNGVPAAPAAPNASGQTTTTASKSAAGSATDFSIAAIMARE
DASSRESSIRSASPISVEDEVDVDVVDCSDAEEPPTKARRLNHHQHHQHH
QHHHNNNNNNNNNNVAHKSRNSGGAVAQTASAESQLNTSSTSSQGRCSTP
PQSPGTEDSEERLTPEPVQKAPKIVGSCNCDDLKPVQCHLETKELWDRFH
DLGTEMIITKTGRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRY
RYAYHRSAWLVAGKADPAPPARLYAHPDSPFSCEALRKQVISFEKVKLTN
NEMDKNGQIVLNSMHRYQPRIHLVRLSHGQSIPSNPKELQDLDHKTYVFP
ETVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFDRDPMEALLLEQ
QLRSPLRLFPDPLMQQFAAQGDPSSMALFEKARQHLQMFGGNSPYAQLMM
PQMYQAAAAAAGPPPPPPGLGAFHMFQQQWPQLTAGFLASANQQAAAAQA
AAQAQAQAQAAAAAMAANRTPPPPPTASTPSSTSSGSPSPDMRPRQYQRF
SPYQLPGGQGPPSSAAGSPPAVNASRSPAHASFLDH
BO17893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mid-PA | 580 | CG6634-PA | 1..580 | 1..580 | 3047 | 100 | Plus |
mid-PB | 580 | CG6634-PB | 1..580 | 1..580 | 3047 | 100 | Plus |
H15-PB | 659 | CG6604-PB | 78..659 | 38..578 | 1717 | 60.6 | Plus |
H15-PA | 660 | CG6604-PA | 78..660 | 38..578 | 1707 | 60.5 | Plus |
org-1-PB | 699 | CG11202-PB | 200..592 | 190..576 | 620 | 40 | Plus |