Clone BO17894 Report

Search the DGRC for BO17894

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:94
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO17894.pep:
Sequenced Size:184

Clone Sequence Records

BO17894.5prime Sequence

182 bp (182 high quality bases) assembled on 2006-10-13

> BO17894.5prime
GAAGTTATCAGTCGACATGCCGAAAGCGGAGTGCGAGATGCTCGTGGTTA
AGGTCATGGCAACTACGGACATGGCAACTACGGACATGGCAACTACGGAC
ATGGTCATCACGGGGGTGGTGGTCATGGACATGGACATTATGGTCGCTAG
TGTATTTATACATTTTGCAAGCTTTCTAGACC

BO17894.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG30029-PA 153 CG30029-RA 1..150 17..166 750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 22:08:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11246289..11246440 15..166 760 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:08:11 has no hits.

BO17894.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:59 Download gff for BO17894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30029-PA 1..153 17..170 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:49 Download gff for BO17894.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11246285..11246446 9..173 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:49 Download gff for BO17894.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11246285..11246446 9..173 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:23:39 Download gff for BO17894.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7133790..7133951 9..173 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:23:39 Download gff for BO17894.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7133790..7133951 9..173 96   Plus

BO17894.3prime Sequence

182 bp (182 high quality bases) assembled on 2006-10-13

> BO17894.3prime
ATGGTCTAGAAAGCTTGCAAAATGTATAAATACACTAGCGACCATAATGT
CCATGTCCATGACCACCACCCCCGTGATGACCATGTCCGTAGTTGCCATG
TCCGTAGTTGCCATGTCCGTAGTTGCCATGACCTTAACCACGAGCATCTC
GCACTCCGCTTTCGGCATGTCGACTGATAACT

BO17894.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG30029-PA 153 CG30029-RA 1..150 168..19 750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 11:05:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11246289..11246440 170..19 760 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:05:28 has no hits.

BO17894.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:57 Download gff for BO17894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30029-PA 1..153 15..168 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:13 Download gff for BO17894.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11246285..11246446 12..176 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:13 Download gff for BO17894.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11246285..11246446 12..176 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:34:44 Download gff for BO17894.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7133790..7133951 12..176 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:34:44 Download gff for BO17894.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7133790..7133951 12..176 96   Minus

BO17894.complete Sequence

184 bp assembled on 2007-12-19

> BO17894.complete
GAAGTTATCAGTCGACATGCCGAAAGCGGAGTGCGAGATGCTCGTGGTTA
AGGTCATGGCAACTACGGACATGGCAACTACGGACATGGCAACTACGGAC
ATGGTCATCACGGGGGTGGTGGTCATGGACATGGACATTATGGTCGCTAG
TGTATTTATACATTTTGCAAGCTTTCTAGACCAT

BO17894.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 13:41:38 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 13:41:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11246289..11246440 15..166 760 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:41:37 has no hits.

BO17894.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:38 Download gff for BO17894.complete
Subject Subject Range Query Range Percent Splice Strand
CG34226-RA 104..144 9..51 93   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:12 Download gff for BO17894.complete
Subject Subject Range Query Range Percent Splice Strand
CG34226-RA 173..322 17..168 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:38 Download gff for BO17894.complete
Subject Subject Range Query Range Percent Splice Strand
CG34226-RA 167..328 9..173 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:46 Download gff for BO17894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11246291..11246440 17..168 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:46 Download gff for BO17894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11246291..11246440 17..168 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:19 Download gff for BO17894.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7133796..7133945 17..168 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:19 Download gff for BO17894.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7133796..7133945 17..168 98   Plus

BO17894.pep Sequence

Translation from 16 to 184

> BO17894.pep
MPKAECEMLVVKVMATTDMATTDMATTDMVITGVVVMDMDIMVASVFIHF
ASFLDH
Sequence BO17894.pep has no blast hits.