Clone BO17895 Report

Search the DGRC for BO17895

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:178
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptOsi4-RA
Protein status:BO17895.pep: validated full length
Sequenced Size:1213

Clone Sequence Records

BO17895.3prime Sequence

712 bp (646 high quality bases) assembled on 2006-10-13

> BO17895.3prime
ATGGTCTAGAAAGCTTGCGGAGCGGTAGTACGGCATGTGTGGTTGCACGT
AGTTGTAGATCAGGGGTCGCCGGGCGGGAGTGGTCTTCGCCATCCACGAG
TCCTCACGTTTGATCTTGTGTCCCAGTCCACCCAGACCACCCAAGGCGGC
GAGCACCTGTGTGTTATTGCTGCCGTCGCTGGACACCTGGGCGGAGTGCA
GGTGGCTCTCGGCGCTCAGACTCTCCAGTCCCGGATGTCCGGGATGTCCT
GGCAGCTGGCCGCCTCCGGCCATCGCCAGGTGGTGCAGCGATGACGGGTA
CATTTCCGGCGATATTTCCGCTCCATGAAGCGGATAGTCCATGCCGTACG
GCATCATGTACGGCGTCTGTTCCGGGAACTGGTACATCATCTTTTCGCTG
GCGTTGTCCATGAGCTTCTTGATCAACACTATTGCGGCTACCACGAAGGC
AATTTTGGACAGGATCAGAGCCTTGAGAGTCAGGAGCCCCACCGCCTTTG
CGGCCACCATCGTCCACCCGAATGTTGTGGCCGCCAGGTACATGGGTATG
AACATCTGGAACTGCTTCTTGTCCTGGTGCTGGTGCCGCCTCCGTCCGCC
CAGAAGACCGCCTCCGCCGCCATTGTCACCACCTCCGCCGCCCAGCAGGC
CTCCTCCACCGCCACCATTTCCTCCCAGGCCACCTCCACCGCCCAGTATT
CCTCCTCCTTGA

BO17895.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10303-PA 1182 Osi4-RA 490..1179 708..19 3425 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Osi4-RA 1516 CG10303-RA 609..1298 708..19 3435 99.9 Minus
Osi4-RB 1522 CG10303-RB 609..1304 708..19 3365 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6220219..6220536 391..708 1575 99.7 Plus
3R 32079331 3R 6219622..6219933 84..395 1545 99.7 Plus
3R 32079331 3R 6218536..6218600 19..83 325 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:38:34 has no hits.

BO17895.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:59 Download gff for BO17895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10303-PA 486..1182 16..711 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:30 Download gff for BO17895.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 605..1304 13..711 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:53 Download gff for BO17895.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 605..1304 13..711 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:53 Download gff for BO17895.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6218530..6218600 13..83 95 <- Plus
3R 6219622..6219929 84..391 100 <- Plus
3R 6220220..6220540 392..711 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:30 Download gff for BO17895.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2044252..2044322 13..83 95 <- Plus
arm_3R 2045344..2045651 84..391 100 <- Plus
arm_3R 2045942..2046262 392..711 99   Plus

BO17895.5prime Sequence

836 bp (712 high quality bases) assembled on 2006-10-13

> BO17895.5prime
GAAGTTATCAGTCGACATGCCCAGGCATTTAGTTGCCAGCTGCCTTCTGC
TGGCTTTGGGTCTGAACATGAGCCTGGCGGCGATTCACAAGCGCAGTGGT
GCGAATTCGTTGGGAGTGGATCCCGAGGGCAAGCCTGCGGCGAATCCTGC
GGTCAGTGTGGAGAACACTGACCTGCTGGACAAGCTGAGCTGGAAGTGCG
CAAACAACGCGAGTTGCCTGTACGGGGTGGCCAATGGTCTCATGGCCTCC
TACCGTCGTGGTGAAACCCTCAAGCTGGGGCTTTTCGACCTGGTCAAGTT
GCCCGAACTAGATGCTTCTCGGAAGCACAAGTGGGGCACTGGGCGCGGTC
TCTCCGGCTTTATGGACTTTGTGACGGAAAACGCCATCAGGGTGCCCGTG
GGCCCCATGGTCTTCAGTGTTCAGCGAGCCGAGGACGACAGCGATTATAT
CGAGGTAGCACTGCTGAAAAAGACCTCCAGCAGCACAGGCCGCCTGCAGG
TCAATGGAGGAGGACTACTGGGCGGTGGAGGTGGCCTGGGAGGAAATGGT
GGCGGTGGAGGAGGCCTGCTGGGCGGCGGAGGTGGTGACAATGGCGGCGG
AGGCGGTCTTCTGGGCGGACGGAGGCGGCACCAGCACCAGGACAAGAAGC
AGTTCCAGATGTTCATACCCATGTACCTGGCGGCCACAACATTCGGGTGG
ACGATGGTGGCCGCAAAGGCGGTGGGGCTCCTGACTCTCAAGGCTCTGAT
CCTGTCCAAAATGCCTTCGTGGTAGCCGCAATAGTGTTGATCAAGAAGCT
CATGGACAACGCCAGCGAAAAGATGATGTACCAGTT

BO17895.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10303-PA 1182 Osi4-RA 1..746 17..762 3730 100 Plus
CG10303-PA 1182 Osi4-RA 747..821 762..836 375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Osi4-RB 1522 CG10303-RB 120..940 17..836 4080 99.9 Plus
Osi4-RA 1516 CG10303-RA 120..940 17..836 4080 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6221190..6221662 489..17 2365 100 Minus
3R 32079331 3R 6220219..6220557 822..485 1645 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 09:06:12 has no hits.

BO17895.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:00 Download gff for BO17895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10303-PA 1..821 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:47 Download gff for BO17895.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 120..940 17..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:16 Download gff for BO17895.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 120..940 17..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:16 Download gff for BO17895.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6220220..6220553 489..821 99 <- Minus
3R 6221191..6221662 17..488 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:47 Download gff for BO17895.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2045942..2046275 489..821 99 <- Minus
arm_3R 2046913..2047384 17..488 100   Minus

BO17895.complete Sequence

1213 bp assembled on 2006-10-11

GenBank Submission: FJ634250

> BO17895.complete
GAAGTTATCAGTCGACATGCCCAGGCATTTAGTTGCCAGCTGCCTTCTGC
TGGCTTTGGGTCTGAACATGAGCCTGGCGGCGATTCACAAGCGCAGTGGT
GCGAATTCGTTGGGAGTGGATCCCGAGGGCAAGCCTGCGGCGAATCCTGC
GGTCAGTGTGGAGAACACTGACCTGCTGGACAAGCTGAGCTGGAAGTGCG
CAAACAACGCGAGTTGCCTGTACGGGGTGGCCAATGGTCTCATGGCCTCC
TACCGTCGTGGTGAAACCCTCAAGCTGGGGCTTTTCGACCTGGTCAAGTT
GCCCGAACTAGATGCTTCTCGGAAGCACAAGTGGGGCACTGGGCGCGGTC
TCTCCGGCTTTATGGACTTTGTGACGGAAAACGCCATCAGGGTGCCCGTG
GGCCCCATGGTCTTCAGTGTTCAGCGAGCCGAGGACGACAGCGATTATAT
CGAGGTAGCACTGCTGAAAAAGACCTCCAGCAGCACAGGCCGCCTGCAGG
TCAATGGAGGAGGACTACTGGGCGGTGGAGGTGGCCTGGGAGGAAATGGT
GGCGGTGGAGGAGGCCTGCTGGGCGGCGGAGGTGGTGACAATGGCGGCGG
AGGCGGTCTTCTGGGCGGACGGAGGCGGCACCAGCACCAGGACAAGAAGC
AGTTCCAGATGTTCATACCCATGTACCTGGCGGCCACAACATTCGGGTGG
ACGATGGTGGCCGCAAAGGCGGTGGGGCTCCTGACTCTCAAGGCTCTGAT
CCTGTCCAAAATTGCCTTCGTGGTAGCCGCAATAGTGTTGATCAAGAAGC
TCATGGACAACGCCAGCGAAAAGATGATGTACCAGTTCCCGGAACAGACG
CCGTACATGATGCCGTACGGCATGGACTATCCGCTTCATGGAGCGGAAAT
ATCGCCGGAAATGTACCCGTCATCGCTGCACCACCTGGCGATGGCCGGAG
GCGGCCAGCTGCCAGGACATCCCGGACATCCGGGACTGGAGAGTCTGAGC
GCCGAGAGCCACCTGCACTCCGCCCAGGTGTCCAGCGACGGCAGCAATAA
CACACAGGTGCTCGCCGCCTTGGGTGGTCTGGGTGGACTGGGACACAAGA
TCAAACGTGAGGACTCGTGGATGGCGAAGACCACTCCCGCCCGGCGACCC
CTGATCTACAACTACGTGCAACCACACATGCCGTACTACCGCTCCGCAAG
CTTTCTAGACCAT

BO17895.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Osi4-RA 1182 CG10303-PA 1..1179 17..1195 5895 100 Plus
Osi4-RB 1188 CG10303-PB 1..1185 17..1195 5800 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Osi4-RA 1516 CG10303-RA 120..1298 17..1195 5895 100 Plus
Osi4-RB 1522 CG10303-RB 120..1304 17..1195 5800 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6221190..6221662 489..17 2365 100 Minus
3R 32079331 3R 6220219..6220557 823..485 1695 100 Minus
3R 32079331 3R 6219622..6219933 1130..819 1545 99.7 Minus
3R 32079331 3R 6218536..6218600 1195..1131 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:39:33 has no hits.

BO17895.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:17 Download gff for BO17895.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 1..1182 17..1198 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:44 Download gff for BO17895.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 120..1304 17..1201 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:06 Download gff for BO17895.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 120..1298 17..1197 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:17 Download gff for BO17895.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 120..1304 17..1201 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:49 Download gff for BO17895.complete
Subject Subject Range Query Range Percent Splice Strand
Osi4-RA 120..1298 17..1197 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:49 Download gff for BO17895.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6218533..6218600 1131..1197 97 <- Minus
3R 6219622..6219929 823..1130 100 <- Minus
3R 6220220..6220553 489..822 100 <- Minus
3R 6221191..6221662 17..488 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:06 Download gff for BO17895.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2044255..2044322 1131..1197 97 <- Minus
arm_3R 2045344..2045651 823..1130 100 <- Minus
arm_3R 2045942..2046275 489..822 100 <- Minus
arm_3R 2046913..2047384 17..488 100   Minus

BO17895.pep Sequence

Translation from 16 to 1213

> BO17895.pep
MPRHLVASCLLLALGLNMSLAAIHKRSGANSLGVDPEGKPAANPAVSVEN
TDLLDKLSWKCANNASCLYGVANGLMASYRRGETLKLGLFDLVKLPELDA
SRKHKWGTGRGLSGFMDFVTENAIRVPVGPMVFSVQRAEDDSDYIEVALL
KKTSSSTGRLQVNGGGLLGGGGGLGGNGGGGGGLLGGGGGDNGGGGGLLG
GRRRHQHQDKKQFQMFIPMYLAATTFGWTMVAAKAVGLLTLKALILSKIA
FVVAAIVLIKKLMDNASEKMMYQFPEQTPYMMPYGMDYPLHGAEISPEMY
PSSLHHLAMAGGGQLPGHPGHPGLESLSAESHLHSAQVSSDGSNNTQVLA
ALGGLGGLGHKIKREDSWMAKTTPARRPLIYNYVQPHMPYYRSASFLDH

BO17895.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Osi4-PA 393 CG10303-PA 1..393 1..393 2062 100 Plus
Osi4-PB 395 CG10303-PB 1..395 1..393 2045 99.2 Plus