Clone Sequence Records
BO17895.3prime Sequence
712 bp (646 high quality bases) assembled on 2006-10-13
> BO17895.3prime
ATGGTCTAGAAAGCTTGCGGAGCGGTAGTACGGCATGTGTGGTTGCACGT
AGTTGTAGATCAGGGGTCGCCGGGCGGGAGTGGTCTTCGCCATCCACGAG
TCCTCACGTTTGATCTTGTGTCCCAGTCCACCCAGACCACCCAAGGCGGC
GAGCACCTGTGTGTTATTGCTGCCGTCGCTGGACACCTGGGCGGAGTGCA
GGTGGCTCTCGGCGCTCAGACTCTCCAGTCCCGGATGTCCGGGATGTCCT
GGCAGCTGGCCGCCTCCGGCCATCGCCAGGTGGTGCAGCGATGACGGGTA
CATTTCCGGCGATATTTCCGCTCCATGAAGCGGATAGTCCATGCCGTACG
GCATCATGTACGGCGTCTGTTCCGGGAACTGGTACATCATCTTTTCGCTG
GCGTTGTCCATGAGCTTCTTGATCAACACTATTGCGGCTACCACGAAGGC
AATTTTGGACAGGATCAGAGCCTTGAGAGTCAGGAGCCCCACCGCCTTTG
CGGCCACCATCGTCCACCCGAATGTTGTGGCCGCCAGGTACATGGGTATG
AACATCTGGAACTGCTTCTTGTCCTGGTGCTGGTGCCGCCTCCGTCCGCC
CAGAAGACCGCCTCCGCCGCCATTGTCACCACCTCCGCCGCCCAGCAGGC
CTCCTCCACCGCCACCATTTCCTCCCAGGCCACCTCCACCGCCCAGTATT
CCTCCTCCTTGA
BO17895.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10303-PA | 1182 | Osi4-RA | 490..1179 | 708..19 | 3425 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi4-RA | 1516 | CG10303-RA | 609..1298 | 708..19 | 3435 | 99.9 | Minus |
Osi4-RB | 1522 | CG10303-RB | 609..1304 | 708..19 | 3365 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6220219..6220536 | 391..708 | 1575 | 99.7 | Plus |
3R | 32079331 | 3R | 6219622..6219933 | 84..395 | 1545 | 99.7 | Plus |
3R | 32079331 | 3R | 6218536..6218600 | 19..83 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:38:34 has no hits.
BO17895.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:14:59 Download gff for
BO17895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10303-PA | 486..1182 | 16..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:30 Download gff for
BO17895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi4-RA | 605..1304 | 13..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:53 Download gff for
BO17895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi4-RA | 605..1304 | 13..711 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:53 Download gff for
BO17895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6218530..6218600 | 13..83 | 95 | <- | Plus |
3R | 6219622..6219929 | 84..391 | 100 | <- | Plus |
3R | 6220220..6220540 | 392..711 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:30 Download gff for
BO17895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2044252..2044322 | 13..83 | 95 | <- | Plus |
arm_3R | 2045344..2045651 | 84..391 | 100 | <- | Plus |
arm_3R | 2045942..2046262 | 392..711 | 99 | | Plus |
BO17895.5prime Sequence
836 bp (712 high quality bases) assembled on 2006-10-13
> BO17895.5prime
GAAGTTATCAGTCGACATGCCCAGGCATTTAGTTGCCAGCTGCCTTCTGC
TGGCTTTGGGTCTGAACATGAGCCTGGCGGCGATTCACAAGCGCAGTGGT
GCGAATTCGTTGGGAGTGGATCCCGAGGGCAAGCCTGCGGCGAATCCTGC
GGTCAGTGTGGAGAACACTGACCTGCTGGACAAGCTGAGCTGGAAGTGCG
CAAACAACGCGAGTTGCCTGTACGGGGTGGCCAATGGTCTCATGGCCTCC
TACCGTCGTGGTGAAACCCTCAAGCTGGGGCTTTTCGACCTGGTCAAGTT
GCCCGAACTAGATGCTTCTCGGAAGCACAAGTGGGGCACTGGGCGCGGTC
TCTCCGGCTTTATGGACTTTGTGACGGAAAACGCCATCAGGGTGCCCGTG
GGCCCCATGGTCTTCAGTGTTCAGCGAGCCGAGGACGACAGCGATTATAT
CGAGGTAGCACTGCTGAAAAAGACCTCCAGCAGCACAGGCCGCCTGCAGG
TCAATGGAGGAGGACTACTGGGCGGTGGAGGTGGCCTGGGAGGAAATGGT
GGCGGTGGAGGAGGCCTGCTGGGCGGCGGAGGTGGTGACAATGGCGGCGG
AGGCGGTCTTCTGGGCGGACGGAGGCGGCACCAGCACCAGGACAAGAAGC
AGTTCCAGATGTTCATACCCATGTACCTGGCGGCCACAACATTCGGGTGG
ACGATGGTGGCCGCAAAGGCGGTGGGGCTCCTGACTCTCAAGGCTCTGAT
CCTGTCCAAAATGCCTTCGTGGTAGCCGCAATAGTGTTGATCAAGAAGCT
CATGGACAACGCCAGCGAAAAGATGATGTACCAGTT
BO17895.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10303-PA | 1182 | Osi4-RA | 1..746 | 17..762 | 3730 | 100 | Plus |
CG10303-PA | 1182 | Osi4-RA | 747..821 | 762..836 | 375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi4-RB | 1522 | CG10303-RB | 120..940 | 17..836 | 4080 | 99.9 | Plus |
Osi4-RA | 1516 | CG10303-RA | 120..940 | 17..836 | 4080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6221190..6221662 | 489..17 | 2365 | 100 | Minus |
3R | 32079331 | 3R | 6220219..6220557 | 822..485 | 1645 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:06:12 has no hits.
BO17895.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:00 Download gff for
BO17895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10303-PA | 1..821 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:47 Download gff for
BO17895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi4-RA | 120..940 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:16 Download gff for
BO17895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi4-RA | 120..940 | 17..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:16 Download gff for
BO17895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6220220..6220553 | 489..821 | 99 | <- | Minus |
3R | 6221191..6221662 | 17..488 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:47 Download gff for
BO17895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2045942..2046275 | 489..821 | 99 | <- | Minus |
arm_3R | 2046913..2047384 | 17..488 | 100 | | Minus |
BO17895.complete Sequence
1213 bp assembled on 2006-10-11
GenBank Submission: FJ634250
> BO17895.complete
GAAGTTATCAGTCGACATGCCCAGGCATTTAGTTGCCAGCTGCCTTCTGC
TGGCTTTGGGTCTGAACATGAGCCTGGCGGCGATTCACAAGCGCAGTGGT
GCGAATTCGTTGGGAGTGGATCCCGAGGGCAAGCCTGCGGCGAATCCTGC
GGTCAGTGTGGAGAACACTGACCTGCTGGACAAGCTGAGCTGGAAGTGCG
CAAACAACGCGAGTTGCCTGTACGGGGTGGCCAATGGTCTCATGGCCTCC
TACCGTCGTGGTGAAACCCTCAAGCTGGGGCTTTTCGACCTGGTCAAGTT
GCCCGAACTAGATGCTTCTCGGAAGCACAAGTGGGGCACTGGGCGCGGTC
TCTCCGGCTTTATGGACTTTGTGACGGAAAACGCCATCAGGGTGCCCGTG
GGCCCCATGGTCTTCAGTGTTCAGCGAGCCGAGGACGACAGCGATTATAT
CGAGGTAGCACTGCTGAAAAAGACCTCCAGCAGCACAGGCCGCCTGCAGG
TCAATGGAGGAGGACTACTGGGCGGTGGAGGTGGCCTGGGAGGAAATGGT
GGCGGTGGAGGAGGCCTGCTGGGCGGCGGAGGTGGTGACAATGGCGGCGG
AGGCGGTCTTCTGGGCGGACGGAGGCGGCACCAGCACCAGGACAAGAAGC
AGTTCCAGATGTTCATACCCATGTACCTGGCGGCCACAACATTCGGGTGG
ACGATGGTGGCCGCAAAGGCGGTGGGGCTCCTGACTCTCAAGGCTCTGAT
CCTGTCCAAAATTGCCTTCGTGGTAGCCGCAATAGTGTTGATCAAGAAGC
TCATGGACAACGCCAGCGAAAAGATGATGTACCAGTTCCCGGAACAGACG
CCGTACATGATGCCGTACGGCATGGACTATCCGCTTCATGGAGCGGAAAT
ATCGCCGGAAATGTACCCGTCATCGCTGCACCACCTGGCGATGGCCGGAG
GCGGCCAGCTGCCAGGACATCCCGGACATCCGGGACTGGAGAGTCTGAGC
GCCGAGAGCCACCTGCACTCCGCCCAGGTGTCCAGCGACGGCAGCAATAA
CACACAGGTGCTCGCCGCCTTGGGTGGTCTGGGTGGACTGGGACACAAGA
TCAAACGTGAGGACTCGTGGATGGCGAAGACCACTCCCGCCCGGCGACCC
CTGATCTACAACTACGTGCAACCACACATGCCGTACTACCGCTCCGCAAG
CTTTCTAGACCAT
BO17895.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi4-RA | 1182 | CG10303-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Osi4-RB | 1188 | CG10303-PB | 1..1185 | 17..1195 | 5800 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi4-RA | 1516 | CG10303-RA | 120..1298 | 17..1195 | 5895 | 100 | Plus |
Osi4-RB | 1522 | CG10303-RB | 120..1304 | 17..1195 | 5800 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6221190..6221662 | 489..17 | 2365 | 100 | Minus |
3R | 32079331 | 3R | 6220219..6220557 | 823..485 | 1695 | 100 | Minus |
3R | 32079331 | 3R | 6219622..6219933 | 1130..819 | 1545 | 99.7 | Minus |
3R | 32079331 | 3R | 6218536..6218600 | 1195..1131 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:39:33 has no hits.
BO17895.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:17 Download gff for
BO17895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi4-RA | 1..1182 | 17..1198 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:44 Download gff for
BO17895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi4-RA | 120..1304 | 17..1201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:06 Download gff for
BO17895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi4-RA | 120..1298 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:17 Download gff for
BO17895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi4-RA | 120..1304 | 17..1201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:49 Download gff for
BO17895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi4-RA | 120..1298 | 17..1197 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:49 Download gff for
BO17895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6218533..6218600 | 1131..1197 | 97 | <- | Minus |
3R | 6219622..6219929 | 823..1130 | 100 | <- | Minus |
3R | 6220220..6220553 | 489..822 | 100 | <- | Minus |
3R | 6221191..6221662 | 17..488 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:06 Download gff for
BO17895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2044255..2044322 | 1131..1197 | 97 | <- | Minus |
arm_3R | 2045344..2045651 | 823..1130 | 100 | <- | Minus |
arm_3R | 2045942..2046275 | 489..822 | 100 | <- | Minus |
arm_3R | 2046913..2047384 | 17..488 | 100 | | Minus |
BO17895.pep Sequence
Translation from 16 to 1213
> BO17895.pep
MPRHLVASCLLLALGLNMSLAAIHKRSGANSLGVDPEGKPAANPAVSVEN
TDLLDKLSWKCANNASCLYGVANGLMASYRRGETLKLGLFDLVKLPELDA
SRKHKWGTGRGLSGFMDFVTENAIRVPVGPMVFSVQRAEDDSDYIEVALL
KKTSSSTGRLQVNGGGLLGGGGGLGGNGGGGGGLLGGGGGDNGGGGGLLG
GRRRHQHQDKKQFQMFIPMYLAATTFGWTMVAAKAVGLLTLKALILSKIA
FVVAAIVLIKKLMDNASEKMMYQFPEQTPYMMPYGMDYPLHGAEISPEMY
PSSLHHLAMAGGGQLPGHPGHPGLESLSAESHLHSAQVSSDGSNNTQVLA
ALGGLGGLGHKIKREDSWMAKTTPARRPLIYNYVQPHMPYYRSASFLDH
BO17895.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi4-PA | 393 | CG10303-PA | 1..393 | 1..393 | 2062 | 100 | Plus |
Osi4-PB | 395 | CG10303-PB | 1..395 | 1..393 | 2045 | 99.2 | Plus |