Clone Sequence Records
BO17896.3prime Sequence
853 bp (755 high quality bases) assembled on 2006-10-13
> BO17896.3prime
ATGGTCTAGAAAGCTTGCGCTGTGCAGCTGAAGCCATGACGCCATCGCCA
TCGCCACCAGGAGCAGCCAGTTGACCAGGTGAACTTGTGCGGCACTGGCG
CCAGTTTCGCCACATTTACCCAAAACTGATAGGTTGGCCTCCAAATGGTG
ATCGGGCGGCTTCTGAGTGCCGCGATAGCAGGCATCGCCCACTACCAACT
TGGCAGCCGTGCCCTCCGTGGGTCGATATGTCAGACACACTCCGTGCTTG
CTGCCCTTGTGGCGCGCTATGATGTAGAAGGTGCTGTTCTCGCTCCAAGA
TCCGTGGCAGGAGTACTCCTCTTCACCATCCACGCTGCACAGCGGACTAA
CGTCTATCAAGTTCTCCGCCGTACAGCCCACCCAGAGCTGCCGCTGGGCA
TTGTAGTTGGGCACACAGCCGGGAACATCACGTCTATTCCGCGTGGCCAC
GAAACCCACGCTTGTATCGCTACTGTTGACCTTTTCCAGGACCAACGCCT
CCTGCTGCTGCTGCTGATGCTCCTGCGGATCCTTCGGTGCGTTGCGGCGA
CTGCGAACGGGCAGGCCTCGGGTATTGGCATGCCAGGAGCCGCGCTCCAT
GCGCTCCGCGTTTCGGAAGCTCAACGAACTGTGTCCTTTATGTCCGAAAT
TTCCCGAGTCAGTGCCCTCGTGGTGGTGATGTCCATGGCCCAGATGCGAT
TTTCCGTTGTGATTGCGCTTGTGGCGCGTGGCCAGGTATGGCGGTCCGAT
GGCGCCACGTAGCGAGTATATGCCCTCCATGGGACAAATGGCCAGGTCCG
GATTGCTTGCCAACAAGGTAATGTAGGCCATCTTATTGATGTCAAAGTGA
TCC
BO17896.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16791-PA | 3327 | CG16791-RA | 2490..3324 | 853..19 | 4150 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16791-RD | 7002 | CG16791-RD | 3411..4245 | 853..19 | 4160 | 99.9 | Minus |
CG16791-RC | 4719 | CG16791-RC | 3588..4422 | 853..19 | 4160 | 99.9 | Minus |
CG16791-RB | 4551 | CG16791-RB | 3420..4254 | 853..19 | 4160 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21321796..21322113 | 318..635 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 21321220..21321420 | 118..318 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 21322173..21322348 | 635..810 | 880 | 100 | Plus |
3R | 32079331 | 3R | 21321057..21321158 | 19..120 | 510 | 100 | Plus |
3R | 32079331 | 3R | 21322421..21322464 | 810..853 | 205 | 97.7 | Plus |
Blast to na_te.dros performed 2015-02-10 18:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2363 | 553..499 | 119 | 70.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6858 | 553..503 | 117 | 75 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6814 | 554..499 | 115 | 69.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6865 | 548..461 | 115 | 61.8 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8274..8319 | 552..505 | 109 | 72.9 | Minus |
BO17896.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:00 Download gff for
BO17896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16791-PA | 2490..3327 | 16..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:47:22 Download gff for
BO17896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16791-RB | 3420..4254 | 19..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:59 Download gff for
BO17896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16791-RB | 3420..4254 | 19..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:59 Download gff for
BO17896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21321057..21321157 | 19..119 | 100 | <- | Plus |
3R | 21321222..21321419 | 120..317 | 100 | <- | Plus |
3R | 21321796..21322112 | 318..634 | 100 | <- | Plus |
3R | 21322173..21322347 | 635..809 | 100 | <- | Plus |
3R | 21322421..21322464 | 810..853 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:47:22 Download gff for
BO17896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17146779..17146879 | 19..119 | 100 | <- | Plus |
arm_3R | 17146944..17147141 | 120..317 | 100 | <- | Plus |
arm_3R | 17147518..17147834 | 318..634 | 100 | <- | Plus |
arm_3R | 17147895..17148069 | 635..809 | 100 | <- | Plus |
arm_3R | 17148143..17148186 | 810..853 | 97 | | Plus |
BO17896.5prime Sequence
776 bp (739 high quality bases) assembled on 2006-10-13
> BO17896.5prime
GAAGTTATCAGTCGACATGAACTACAACTACAACAACAGCTACAACTACA
ACTACATCTGCAGCACCACCAGCCCCAATAACAACAGAAGCAGAAACAAC
AAAAGCAGAGAACAGGACACGCAGCAGCAGCAGCATCAGCAGCAGCATCA
GCAGCCACATCAGCAACCAATGCAGGCGGCACTGAGGACGGCGAGCTTTA
GCTCCAGCTCCAGCTCCAACGCCAGCAGCTCCACGTCCACATCCAAGACG
AGAGCAGGAATAACGTCGTTAATCTATTTACCGCCTTTCTGCTATCCATG
TAAGCATGTGCCTGCGGCCGGCACCACGACTCGGAGTCGAAGTCAGACTT
TGAGCCCTGGCAGCGGGAGTTGCCGGGACAGCAGCTGCTGTTGTCCGCCC
GGCTGGGAACATAAAAATTATGATAAACATGCTTCAGCGGCGACGTTGAC
ACCAGCAACGGCGGCAGTAGGAGCAGCAGGAGCAGGAGGAACAACAACTG
CAACGGCAAGCATCATCACCACAACAGGACCCGCAGCGGCAACAATGTCC
TCCTCGTGGTCTGGTGAATTCCTGCTGCCGGGTATTCAGTTACCCGTGGC
CGCAGCGGGGCATAGCTGCACCGATCTCCGGCAGACGTCGCAATTAGTTA
TGCCCACTGTTGCTAGCGGGGATGTGGTGGCGGCAGTGGACGCAGAAGGC
GGCGTCTTGGAATGCGGCAAGCGATGCTGGCGACGTGAGCGAATCCGGCG
CGAAAGGACAAGTCATGCGTCTGCGG
BO17896.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16791-PA | 3327 | CG16791-RA | 1..760 | 17..776 | 3725 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16791-RD | 7002 | CG16791-RD | 1107..1867 | 16..776 | 3760 | 99.7 | Plus |
CG16791-RC | 4719 | CG16791-RC | 1107..1867 | 16..776 | 3760 | 99.7 | Plus |
CG16791-RB | 4551 | CG16791-RB | 1107..1867 | 16..776 | 3760 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21342388..21343052 | 776..112 | 3280 | 99.5 | Minus |
3R | 32079331 | 3R | 21348395..21348495 | 116..16 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:26:57 has no hits.
BO17896.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:01 Download gff for
BO17896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16791-PA | 1..760 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:11:41 Download gff for
BO17896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16791-RB | 1097..1867 | 7..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:24 Download gff for
BO17896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16791-RB | 1097..1867 | 7..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:24 Download gff for
BO17896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21342388..21343048 | 116..776 | 99 | <- | Minus |
3R | 21348396..21348505 | 7..115 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:11:41 Download gff for
BO17896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17168110..17168770 | 116..776 | 99 | <- | Minus |
arm_3R | 17174118..17174227 | 7..115 | 97 | | Minus |
BO17896.complete Sequence
3358 bp assembled on 2006-12-18
GenBank Submission: FJ634251
> BO17896.complete
GAAGTTATCAGTCGACATGAACTACAACTACAACAACAGCTACAACTACA
ACTACATCTGCAGCACCACCAGCCCCAATAACAACAGAAGCAGAAACAAC
AAAAGCAGAGAACAGGACACGCAGCAGCAGCAGCATCAGCAGCAGCATCA
GCAGCCACATCAGCAACCAATGCAGGCGGCACTGAGGACGGCGAGCTTTA
GCTCCAGCTCCAGCTCCAACGCCAGCAGCTCCACGTCCACATCCAAGACG
AGAGCAGGAATAACGTCGTTAATCTATTTACCGCCTTTCTGCTATCCATG
TAAGCATGTGCCTGCGGCCGGCACCACGACTCGGAGTCGAAGTCAGACTT
TGAGCCCTGGCAGCGGGAGTTGCCGGGACAGCAGCTGCTGTTGTCCGCCC
GGCTGGGAACATAAAAATTATGATAAACATGCTTCAGCGGCGACGTTGAC
ACCAGCAACGGCGGCAGTAGGAGCAGCAGGAGCAGGAGGAACAACAACTG
CAACGGCAAGCATCATCACCACAACAGGACCCGCAGCGGCAACAATGTCC
TCCTCGTGGTCTGGTGAATTCCTGCTGCCGGGTATTCAGTTACCCGTGGC
CGCAGCGGGGCATAGCTGCACCGATCTCCGGCAGACGTCGCAATTAGTTA
TGCCCACTGTTGCTAGCGGGGATGTGGTGGCGGCAGTGGACGCAGAAGGC
GGCGTCTTGGAATGCGGCAAGCGATGCTGGCGACGTGAGCGAATCCGGCG
CGAAGGACCAAGTCATGCGTCTGCGGCGTCGCTGGCCCAGGTAAATCCAA
TCAGCACAAGCAAAAGCACCAGCATCAGCACTAGCCCAGCAACAATAGAT
GGAGCATCGGGAGCAGGAGCAGTGGTTACGACAACCGCTCACAATTCGCA
AACAACGACAAAAACAACGGCAAGGGGCACAACTGGTGCTGCATTGCCGC
ATGATGAAGAGAATGAGAATGATGAATGTAGGTGCTTTAACTATAACGGT
GATATTAGTCTGGATCGGCGGGGCGAGGCCGCGGAACTTTCCGGCATTAC
GTGGCTGATGTTCTTGTGGCAGCATCTGCTGCCGGGCAACGGAAACAACA
CCCCCACACTCATCCGCACCCACACCCACACCCACGAATCCAGCTTCCCA
GCGGGGACGACAACGAAAACAGCAAGGAGCAGGAGCTGCGCCATGACGTC
GACAAAAAGTTGGCTGCGACCGCTGCTAATGCTGCTCTTGGCCACGTCCG
TCAGCGGCTGGGGCGGTCGACAAGATGCGCCCACAAATTGCACATTTCCG
GCGAGATGGGAGGGCTCCTGGTTCCTGTCCGGCTATCAGCAATCCATACA
CATCAAGGGCTCCCAGTTCAGCTATCGCGGCAGGTGTGCGGCCTCCGATG
GTAACAAATATCTGATTGTCGACGAGAAAGGATGTCATCGTTGCCTGGTT
ATCTATGAGAAGCATAAAAATGTGCTCCAATATAAAGAAAGTGAGTGCGA
AGGTGATAGTATGTATATGCATCAGTCGAACCCATCTGCACTGGCGATGC
GTAGCTCTAATAAACAAAGTGATCATAGGGGGGGAGCTCATCCCAATACG
AACGGGCATTCAAGACTATCTTCATCGGATCAGTACATAATGAGATCCAA
TGACGATATGAATGATTGTCCCCCAGACTTTTGCAAGGGCCGTGAGACTT
TACAGAATCTCTGCGACCAGATTCCGGGCGATGCCCTGCTCTACTCGCTT
TTCCGGGAGAGCGCCGAGCCGGTCAAGTGTCCGCTCAAGGGACCCTTCAT
CTTCACGTACAATCGCGGGCATGGGGAGTGCAAGTCGCCGGTGTCCAACA
TTGAGAGCTGCACGGAGGAGAGCCGCCTCCTGTTGAGCTTCCAGGCCTGT
CCCGATGTCCAGGGCACCGAGAGTACGGTCGAGGAGCTGACTTGCCTGGC
AACCTGGAAGGACGGCAACTCACGCTACTTGGTCGGTCTCGTCTCGCACC
ATCATGCCATTTCGAACGAGGAGCGCTATCGCTGCTTTGTCTACGAGAAA
ATCTCCTCGCTGATGGGCGGACCCAGTATGCTCAGCTCCAAGGATGCCGA
ATATAAGCTGGCCCAATCCGGCGACGCCACTTGCAATGGCTTAGACAGTG
CCGAGGTCGGCTCACGTATCATGTCGCTGCGAAAACCGCCCATCGCCGAG
CGCTGCGATTTCCCGGCGTGGTTCAAGGGACCCCGCCACTGGCATGCCCT
CATGGGCAATGCCGTCTACAATTATCATTCCAATGACGGGTCCGTGCACA
TTATTAAGCCCAACGGCTATATGGAGACACGTGCGCTGTGCGAGCAAATA
AATAAACAGACGCCGACAGAAATGATGGCCGTGGTGCACTACACCACCGG
GTGCCAATCGGGATTCATGTGCATGATGTTCTACCGCCGGGACACGTTCG
TCATCGAGATACAGACCGGTAAGCCTGCCATTCGCCTGGAGGACGCCTGT
GCACCGGATCACTTTGACATCAATAAGATGGCCTACATTACCTTGCTGGC
AAGCAATCCGGACCTGGCCATTTGTCCCATGGAGGGCATATACTCGCTAC
GTGGCGCCATCGGACCGCCATACCTGGCCACGCGCCACAAGCGCAATCAC
AACGGAAAATCGCATCTGGGCCATGGACATCACCACCACGAGGGCACTGA
CTCGGGAAATTTCGGACATAAAGGACACAGTTCGTTGAGCTTCCGAAACG
CGGAGCGCATGGAGCGCGGCTCCTGGCATGCCAATACCCGAGGCCTGCCC
GTTCGCAGTCGCCGCAACGCACCGAAGGATCCGCAGGAGCATCAGCAGCA
GCAGCAGGAGGCGTTGGTCCTGGAAAAGGTCAACAGTAGCGATACAAGCG
TGGGTTTCGTGGCCACGCGGAATAGACGTGATGTTCCCGGCTGTGTGCCC
AACTACAATGCCCAGCGGCAGCTCTGGGTGGGCTGTACGGCGGAGAACTT
GATAGACGTTAGTCCGCTGTGCAGCGTGGATGGTGAAGAGGAGTACTCCT
GCCACGGATCTTGGAGCGAGAACAGCACCTTCTACATCATAGCGCGCCAC
AAGGGCAGCAAGCACGGAGTGTGTCTGACATATCGACCCACGGAGGGCAC
GGCTGCCAAGTTGGTAGTGGGCGATGCCTGCTATCGCGGCACTCAGAAGC
CGCCCGATCACCATTTGGAGGCCAACCTATCAGTTTTGGGTAAATGTGGC
GAAACTGGCGCCAGTGCCGCACAAGTTCACCTGGTCAACTGGCTGCTCCT
GGTGGCGATGGCGATGGCGTCATGGCTTCAGCTGCACAGCGCAAGCTTTC
TAGACCAT
BO17896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16791-RA | 3327 | CG16791-PA | 1..3324 | 17..3340 | 16620 | 100 | Plus |
CG16791-RC | 3318 | CG16791-PC | 1..3315 | 17..3340 | 16450 | 99.7 | Plus |
CG16791-RB | 3150 | CG16791-PB | 1475..3147 | 1668..3340 | 8365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16791-RA | 7188 | CG16791-RA | 1107..4431 | 16..3340 | 16625 | 100 | Plus |
CG16791-RC | 4719 | CG16791-RC | 1107..4422 | 16..3340 | 16455 | 99.7 | Plus |
CG16791-RB | 4551 | CG16791-RB | 2582..4254 | 1668..3340 | 8365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21341887..21343052 | 1277..112 | 5830 | 100 | Minus |
3R | 32079331 | 3R | 21321796..21322113 | 3041..2724 | 1590 | 100 | Minus |
3R | 32079331 | 3R | 21334525..21334768 | 1669..1426 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 21321220..21321420 | 3241..3041 | 1005 | 100 | Minus |
3R | 32079331 | 3R | 21322173..21322348 | 2724..2549 | 880 | 100 | Minus |
3R | 32079331 | 3R | 21337672..21337825 | 1430..1277 | 755 | 99.4 | Minus |
3R | 32079331 | 3R | 21322421..21322567 | 2549..2403 | 735 | 100 | Minus |
3R | 32079331 | 3R | 21323615..21323754 | 2067..1928 | 700 | 100 | Minus |
3R | 32079331 | 3R | 21323881..21324019 | 1928..1790 | 695 | 100 | Minus |
3R | 32079331 | 3R | 21322839..21322968 | 2283..2154 | 650 | 100 | Minus |
3R | 32079331 | 3R | 21324103..21324227 | 1791..1667 | 625 | 100 | Minus |
3R | 32079331 | 3R | 21322635..21322754 | 2403..2284 | 600 | 100 | Minus |
3R | 32079331 | 3R | 21321057..21321158 | 3340..3239 | 510 | 100 | Minus |
3R | 32079331 | 3R | 21348395..21348495 | 116..16 | 505 | 100 | Minus |
3R | 32079331 | 3R | 21323437..21323528 | 2157..2066 | 460 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2363 | 2806..2860 | 119 | 70.9 | Plus |
BO17896.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:58 Download gff for
BO17896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16791-RA | 1..3327 | 17..3343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:51 Download gff for
BO17896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16791-RA | 1091..4414 | 17..3342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:27 Download gff for
BO17896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16791-RA | 1108..4431 | 17..3342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:58 Download gff for
BO17896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16791-RA | 1080..4414 | 7..3340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:18 Download gff for
BO17896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16791-RA | 1108..4431 | 17..3342 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:18 Download gff for
BO17896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21348396..21348494 | 17..115 | 100 | | Minus |
3R | 21322421..21322566 | 2404..2549 | 100 | <- | Minus |
3R | 21322635..21322754 | 2284..2403 | 100 | <- | Minus |
3R | 21322173..21322347 | 2550..2724 | 100 | <- | Minus |
3R | 21321054..21321157 | 3240..3342 | 98 | <- | Minus |
3R | 21321222..21321419 | 3042..3239 | 100 | <- | Minus |
3R | 21321796..21322112 | 2725..3041 | 100 | <- | Minus |
3R | 21322839..21322966 | 2156..2283 | 100 | <- | Minus |
3R | 21323439..21323527 | 2067..2155 | 100 | <- | Minus |
3R | 21323616..21323753 | 1929..2066 | 100 | <- | Minus |
3R | 21323881..21324018 | 1791..1928 | 100 | <- | Minus |
3R | 21324104..21324226 | 1668..1790 | 100 | <- | Minus |
3R | 21334527..21334768 | 1426..1667 | 100 | <- | Minus |
3R | 21337677..21337824 | 1278..1425 | 100 | <- | Minus |
3R | 21341887..21343048 | 116..1277 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:27 Download gff for
BO17896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17163399..17163546 | 1278..1425 | 100 | <- | Minus |
arm_3R | 17149338..17149475 | 1929..2066 | 100 | <- | Minus |
arm_3R | 17149603..17149740 | 1791..1928 | 100 | <- | Minus |
arm_3R | 17149826..17149948 | 1668..1790 | 100 | <- | Minus |
arm_3R | 17148561..17148688 | 2156..2283 | 100 | <- | Minus |
arm_3R | 17146776..17146879 | 3240..3342 | 98 | <- | Minus |
arm_3R | 17146944..17147141 | 3042..3239 | 100 | <- | Minus |
arm_3R | 17147518..17147834 | 2725..3041 | 100 | <- | Minus |
arm_3R | 17147895..17148069 | 2550..2724 | 100 | <- | Minus |
arm_3R | 17148143..17148288 | 2404..2549 | 100 | <- | Minus |
arm_3R | 17148357..17148476 | 2284..2403 | 100 | <- | Minus |
arm_3R | 17149161..17149249 | 2067..2155 | 100 | <- | Minus |
arm_3R | 17160249..17160490 | 1426..1667 | 100 | <- | Minus |
arm_3R | 17167609..17168770 | 116..1277 | 100 | <- | Minus |
arm_3R | 17174118..17174216 | 17..115 | 100 | | Minus |
BO17896.pep Sequence
Translation from 16 to 3358
> BO17896.pep
MNYNYNNSYNYNYICSTTSPNNNRSRNNKSREQDTQQQQHQQQHQQPHQQ
PMQAALRTASFSSSSSSNASSSTSTSKTRAGITSLIYLPPFCYPCKHVPA
AGTTTRSRSQTLSPGSGSCRDSSCCCPPGWEHKNYDKHASAATLTPATAA
VGAAGAGGTTTATASIITTTGPAAATMSSSWSGEFLLPGIQLPVAAAGHS
CTDLRQTSQLVMPTVASGDVVAAVDAEGGVLECGKRCWRRERIRREGPSH
ASAASLAQVNPISTSKSTSISTSPATIDGASGAGAVVTTTAHNSQTTTKT
TARGTTGAALPHDEENENDECRCFNYNGDISLDRRGEAAELSGITWLMFL
WQHLLPGNGNNTPTLIRTHTHTHESSFPAGTTTKTARSRSCAMTSTKSWL
RPLLMLLLATSVSGWGGRQDAPTNCTFPARWEGSWFLSGYQQSIHIKGSQ
FSYRGRCAASDGNKYLIVDEKGCHRCLVIYEKHKNVLQYKESECEGDSMY
MHQSNPSALAMRSSNKQSDHRGGAHPNTNGHSRLSSSDQYIMRSNDDMND
CPPDFCKGRETLQNLCDQIPGDALLYSLFRESAEPVKCPLKGPFIFTYNR
GHGECKSPVSNIESCTEESRLLLSFQACPDVQGTESTVEELTCLATWKDG
NSRYLVGLVSHHHAISNEERYRCFVYEKISSLMGGPSMLSSKDAEYKLAQ
SGDATCNGLDSAEVGSRIMSLRKPPIAERCDFPAWFKGPRHWHALMGNAV
YNYHSNDGSVHIIKPNGYMETRALCEQINKQTPTEMMAVVHYTTGCQSGF
MCMMFYRRDTFVIEIQTGKPAIRLEDACAPDHFDINKMAYITLLASNPDL
AICPMEGIYSLRGAIGPPYLATRHKRNHNGKSHLGHGHHHHEGTDSGNFG
HKGHSSLSFRNAERMERGSWHANTRGLPVRSRRNAPKDPQEHQQQQQEAL
VLEKVNSSDTSVGFVATRNRRDVPGCVPNYNAQRQLWVGCTAENLIDVSP
LCSVDGEEEYSCHGSWSENSTFYIIARHKGSKHGVCLTYRPTEGTAAKLV
VGDACYRGTQKPPDHHLEANLSVLGKCGETGASAAQVHLVNWLLLVAMAM
ASWLQLHSASFLDH
BO17896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16791-PA | 1108 | CG16791-PA | 1..1108 | 1..1108 | 5978 | 100 | Plus |
CG16791-PC | 1105 | CG16791-PC | 1..1105 | 1..1108 | 5933 | 99.6 | Plus |
CG16791-PB | 1049 | CG16791-PB | 438..1049 | 513..1108 | 3042 | 92.5 | Plus |
CG16791-PD | 1046 | CG16791-PD | 438..1046 | 513..1108 | 3024 | 92.4 | Plus |
CG16791-PD | 1046 | CG16791-PD | 1..496 | 1..496 | 2632 | 99.4 | Plus |
CG16791-PB | 1049 | CG16791-PB | 1..499 | 1..496 | 2623 | 99 | Plus |