Clone BO17908 Report

Search the DGRC for BO17908

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptStart1-RB
Protein status:BO17908.pep: validated full length
Sequenced Size:1669

Clone Sequence Records

BO17908.3prime Sequence

640 bp (546 high quality bases) assembled on 2006-10-13

> BO17908.3prime
ATGGTCTAGAAAGCTTGCGGCAAAGCACCCACTCCACAATGCAGCTATCC
GATTTTCCAACGATTTCACGAAACGCAAACCCACTGACAATGTTCTGCCC
TCTGAAAATTGAAGAGTCAACCGACTTGTGTATTTGGGTGAAGGTGGAAC
GGCAGCATATTGCACACTAACCGCCGAAGTGACCCAAACCCTGTCCTTGG
TTTTTCCCACGCTGGGTACATTTGGTTTCGTCATGTTATTCGCTTCGCCG
TCGACCTTGTCCTTAGCATCCTCGAACTCGTCCTGATCCAATGGCGGTGG
CTCCTCGTCAAAGTTCACGATGGGACCTAGGCTCTTGGCGCCCAAGCTGT
TGCCCAGGGTGTCAAAAGGCATAGCGGCTCCCTTGGATGAAGTGGGAAAC
GTTGCCTTGCAACTAGACACGCTACTGGGCAGCAGTGGGGTGTTTGAGTC
ACCATCGGAAATGGTACTAACACTACCCTCGCAAGACCGATTTAGACTGC
TGTTCCCATCATCGCTGCTGAGCTGAGCCGTCTCATCGTCATCGCAGATT
TGACCATTGTAAAAGAGCCTACAAAACCGCAAGTTCACGAAGTCGCGGCT
CTTCACCATGCCACCTCCTCCGCCCACGGATACCTGGATA

BO17908.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3522-PB 1638 Start1-RB 1018..1635 636..19 3065 99.8 Minus
CG3522-PA 1752 Start1-RA 1018..1529 636..125 2535 99.8 Minus
CG3522-PA 1752 Start1-RA 1528..1612 103..19 425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Start1-RB 2360 CG3522-RB 1391..2008 636..19 3075 99.8 Minus
Start1-RD 1270 CG3522-RD 324..918 636..19 2720 96.1 Minus
Start1-RC 2337 CG3522-RC 1391..1985 636..19 2720 96.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24576596..24577107 636..125 2545 99.8 Minus
2R 25286936 2R 24577151..24577258 126..19 540 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:50:36 has no hits.

BO17908.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:12 Download gff for BO17908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3522-PB 1016..1638 18..639 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:03:40 Download gff for BO17908.3prime
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 1389..2008 19..639 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:01:44 Download gff for BO17908.3prime
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 1389..2008 19..639 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:01:44 Download gff for BO17908.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24577153..24577258 19..124 100   Minus
2R 24576594..24577107 125..639 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:03:40 Download gff for BO17908.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20464117..20464630 125..639 99 -> Minus
arm_2R 20464676..20464781 19..124 100   Minus

BO17908.5prime Sequence

738 bp (656 high quality bases) assembled on 2006-10-13

> BO17908.5prime
GAAGTTATCAGTCGACATGTCCAATATGGATCCAAGTGATGTCCGCAGTA
CCGCCCAGCTCATCCTGGCCAACGCTCGGCAGGGAAATAGCGCTTACAAC
ATGCAGTATGATATGTCACGGGCACATTCCATAAACCTGATTACGGAGGA
CTTCTTGGCCGGTTATATGCAGGATGGCAGGATGTCCGTGGTTCGAAGGT
TTTTCTGCCTCTTCGTCACATTCGACTTGGTCTTCGTTTCGCTGCTGTGG
CTCATTTGCATTGTGATCAATGGAGACAATATATTCACTGCCTTCCACAA
ACAAATCGTGGAGTACACCATCTACAAATCGCTCTTTGATGTTGTGGCAG
TCGCTATCTGCCGATTTTTGGTGCTCATATTTTTCTACGCCATATTGTAC
ATCAATCACTGGTCCATCATAGCGCTCTCTACAAGTGGGTCTTGCTTGTT
CCTCATCTCGAAGGTGTTTGTGTTCGATTGGCTGGATTCAAAGCAGCAGG
TATTTGAGGTAATCCTCATAATAACCTCGTTCATACTGGCTTGGGGAGAA
GCCTGGTTCCTGGACTGTAGGGTGATTCCTCAAGAGCGACATGCCCAACA
CTATTTCCGGACTATGACTTCAAATGATCGCACACCCATGGAACAGCCTG
CCATTTTGATTGAGCAAGAACGGCCTCCGCAAAGTGTAACCGATTTTTAT
TCACTCATGGACACGGCTCGTCATTCCGACGAGGAGGA

BO17908.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3522-PB 1638 Start1-RB 1..722 17..738 3610 100 Plus
CG3522-PA 1752 Start1-RA 1..722 17..738 3610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
Start1-RC 2337 CG3522-RC 369..1095 12..738 3620 99.9 Plus
Start1-RA 2170 CG3522-RA 202..928 12..738 3620 99.9 Plus
Start1-RB 2360 CG3522-RB 369..1095 12..738 3620 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24575361..24575520 265..424 800 100 Plus
2R 25286936 2R 24575151..24575299 117..265 745 100 Plus
2R 25286936 2R 24575691..24575823 479..611 665 100 Plus
2R 25286936 2R 24575877..24576003 612..738 635 100 Plus
2R 25286936 2R 24574985..24575089 12..116 510 99 Plus
2R 25286936 2R 24575575..24575629 424..478 275 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:04:43 has no hits.

BO17908.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:14 Download gff for BO17908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3522-PA 1..721 17..737 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:47:25 Download gff for BO17908.5prime
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 362..1094 6..737 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:35 Download gff for BO17908.5prime
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 362..1094 6..737 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:35 Download gff for BO17908.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24574978..24575089 6..116 96 -> Plus
2R 24575151..24575299 117..265 100 -> Plus
2R 24575362..24575520 266..424 100 -> Plus
2R 24575576..24575629 425..478 100 -> Plus
2R 24575691..24575823 479..611 100 -> Plus
2R 24575877..24576002 612..737 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:47:25 Download gff for BO17908.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20462501..20462612 6..116 96 -> Plus
arm_2R 20462674..20462822 117..265 100 -> Plus
arm_2R 20462885..20463043 266..424 100 -> Plus
arm_2R 20463099..20463152 425..478 100 -> Plus
arm_2R 20463214..20463346 479..611 100 -> Plus
arm_2R 20463400..20463525 612..737 100   Plus

BO17908.complete Sequence

1669 bp assembled on 2006-12-18

GenBank Submission: FJ634252

> BO17908.complete
GAAGTTATCAGTCGACATGTCCAATATGGATCCAAGTGATGTCCGCAGTA
CCGCCCAGCTCATCCTGGCCAACGCTCGGCAGGGAAATAGCGCTTACAAC
ATGCAGTATGATATGTCACGGGCACATTCCATAAACCTGATTACGGAGGA
CTTCTTGGCCGGTTATATGCAGGATGGCAGGATGTCCGTGGTTCGAAGGT
TTTTCTGCCTCTTCGTCACATTCGACTTGGTCTTCGTTTCGCTGCTGTGG
CTCATTTGCATTGTGATCAATGGAGACAATATATTCACTGCCTTCCACAA
ACAAATCGTGGAGTACACCATCTACAAATCGCTCTTTGATGTTGTGGCAG
TCGCTATCTGCCGATTTTTGGTGCTCATATTTTTCTACGCCATATTGTAC
ATCAATCACTGGTCCATCATAGCGCTCTCTACAAGTGGGTCTTGCTTGTT
CCTCATCTCGAAGGTGTTTGTGTTCGATTGGCTGGATTCAAAGCAGCAGG
TATTTGAGGTAATCCTCATAATAACCTCGTTCATACTGGCTTGGGGAGAA
GCCTGGTTCCTGGACTGTAGGGTGATTCCTCAAGAGCGACATGCCCAACA
CTATTTCCGGACTATGACTTCAAATGATCGCACACCCATGGAACAGCCTG
CCATTTTGATTGAGCAAGAACGGCCTCCGCAAAGTGTAACCGATTTTTAT
TCACTCATGGACACGGCTCGTCATTCCGACGAGGAGGATGAGTTGGATGA
TGAGTACACACAAATGGGATTGGATTGCCTTCGAAAGGCCTACGAGATCA
TCGAGTCAAGTGACTGGAAGGTGGAAAAAGTTAACCAGAAAGGCGACACC
ATACACAGCACTCAGCGCGACAAGATTGGAAAGATCTACAAGTTGACGGC
CCGCATCAAGTATCCTGCAAAGGCTCTGATGGAAGATCTGTTCTATCGCA
TTGAAGACTGTCCCAAGTGGAATCCTGCTCTTTTGGAGTCCAAGATAGTA
CGCAAAATCAACTCCTACACCGATATTACCTATCAGGTATCCGTGGGCGG
AGGAGGTGGCATGGTGAAGAGCCGCGACTTCGTGAACTTGCGGTCTTGTA
GGCTCTTTTACAATGGTCAAATCTGCGATGACGATGAGACGGCTCAGCTC
AGCAGCGATGATGGGAACAGCAGTCTAAATCGGTCTTGCGAGGGTAGTGT
TAGTACCATTTCCGATGGTGACTCAAACACCCCACTGCTGCCCAGTAGCG
TGTCTAGTTGCAAGGCAACGTTTCCCACTTCATCCAAGGGAGCCGCTATG
CCTTTTGACACCCTGGGCAACAGCTTGGGCGCCAAGAGCCTAGGTCCCAT
CGTGAACTTTGACGAGGAGCCACCGCCATTGGATCAGGACGAGTTCGAGG
ATGCTAAGGACAAGGTCGACGGCGAAGCGAATAACATGACGAAACCAAAT
GTACCCAGCGTGGGAAAAACCAAGGACAGGGTTTGGGTCACTTCGGCGGT
TAGTGTGCAATATGCTGCCGTTCCACCTTCACCCAAATACACAAGTCGGT
TGACTCTTCAATTTTCAGAGGGCAGAACATTGTCAGTGGGTTTGCGTTTC
GTGAAATCGTTGGAAAATCGGATAGCTGCATTGTGGAGTGGGTGCTTTGC
CGCAAGCTTTCTAGACCAT

BO17908.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Start1-RB 1638 CG3522-PB 1..1635 17..1651 8175 100 Plus
Start1-RC 1752 CG3522-PC 1..1529 17..1545 7645 100 Plus
Start1-RA 1752 CG3522-PA 1..1529 17..1545 7645 100 Plus
Start1-RC 1752 CG3522-PC 1528..1612 1567..1651 425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
Start1-RB 2360 CG3522-RB 369..2008 12..1651 8185 99.9 Plus
Start1-RC 2337 CG3522-RC 369..1902 12..1545 7655 99.9 Plus
Start1-RA 2170 CG3522-RA 202..1735 12..1545 7655 99.9 Plus
Start1-RC 2337 CG3522-RC 1901..1985 1567..1651 425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24576566..24577107 1004..1545 2710 100 Plus
2R 25286936 2R 24575361..24575520 265..424 800 100 Plus
2R 25286936 2R 24576193..24576347 745..899 775 100 Plus
2R 25286936 2R 24575151..24575299 117..265 745 100 Plus
2R 25286936 2R 24575877..24576011 612..746 675 100 Plus
2R 25286936 2R 24575691..24575823 479..611 665 100 Plus
2R 25286936 2R 24577151..24577258 1544..1651 540 100 Plus
2R 25286936 2R 24576400..24576505 898..1003 530 100 Plus
2R 25286936 2R 24574985..24575089 12..116 510 99 Plus
2R 25286936 2R 24575575..24575629 424..478 275 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:22:38 has no hits.

BO17908.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:00 Download gff for BO17908.complete
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 1..1638 17..1652 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:34 Download gff for BO17908.complete
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 344..1990 6..1651 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:19 Download gff for BO17908.complete
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 374..2008 17..1653 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:00 Download gff for BO17908.complete
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 344..1990 6..1651 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:35 Download gff for BO17908.complete
Subject Subject Range Query Range Percent Splice Strand
Start1-RB 374..2008 17..1653 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:35 Download gff for BO17908.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24575362..24575520 266..424 100 -> Plus
2R 24575576..24575629 425..478 100 -> Plus
2R 24575691..24575823 479..611 100 -> Plus
2R 24575877..24576010 612..745 100 -> Plus
2R 24576194..24576346 746..898 100 -> Plus
2R 24576401..24576505 899..1003 100 -> Plus
2R 24574990..24575089 17..116 100 -> Plus
2R 24575151..24575299 117..265 100 -> Plus
2R 24576566..24577107 1004..1545 100 -> Plus
2R 24577153..24577258 1546..1653 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:19 Download gff for BO17908.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20463717..20463869 746..898 100 -> Plus
arm_2R 20463924..20464028 899..1003 100 -> Plus
arm_2R 20462513..20462612 17..116 100 -> Plus
arm_2R 20462674..20462822 117..265 100 -> Plus
arm_2R 20462885..20463043 266..424 100 -> Plus
arm_2R 20463099..20463152 425..478 100 -> Plus
arm_2R 20463214..20463346 479..611 100 -> Plus
arm_2R 20463400..20463533 612..745 100 -> Plus
arm_2R 20464089..20464630 1004..1545 100 -> Plus
arm_2R 20464676..20464781 1546..1653 98   Plus

BO17908.pep Sequence

Translation from 16 to 1669

> BO17908.pep
MSNMDPSDVRSTAQLILANARQGNSAYNMQYDMSRAHSINLITEDFLAGY
MQDGRMSVVRRFFCLFVTFDLVFVSLLWLICIVINGDNIFTAFHKQIVEY
TIYKSLFDVVAVAICRFLVLIFFYAILYINHWSIIALSTSGSCLFLISKV
FVFDWLDSKQQVFEVILIITSFILAWGEAWFLDCRVIPQERHAQHYFRTM
TSNDRTPMEQPAILIEQERPPQSVTDFYSLMDTARHSDEEDELDDEYTQM
GLDCLRKAYEIIESSDWKVEKVNQKGDTIHSTQRDKIGKIYKLTARIKYP
AKALMEDLFYRIEDCPKWNPALLESKIVRKINSYTDITYQVSVGGGGGMV
KSRDFVNLRSCRLFYNGQICDDDETAQLSSDDGNSSLNRSCEGSVSTISD
GDSNTPLLPSSVSSCKATFPTSSKGAAMPFDTLGNSLGAKSLGPIVNFDE
EPPPLDQDEFEDAKDKVDGEANNMTKPNVPSVGKTKDRVWVTSAVSVQYA
AVPPSPKYTSRLTLQFSEGRTLSVGLRFVKSLENRIAALWSGCFAASFLD
H

BO17908.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
Start1-PB 545 CG3522-PB 1..545 1..545 2842 100 Plus
Start1-PC 583 CG3522-PC 1..509 1..509 2662 100 Plus
Start1-PA 583 CG3522-PA 1..509 1..509 2662 100 Plus
Start1-PD 343 CG3522-PD 4..269 244..509 1398 100 Plus