Clone Sequence Records
BO17908.3prime Sequence
640 bp (546 high quality bases) assembled on 2006-10-13
> BO17908.3prime
ATGGTCTAGAAAGCTTGCGGCAAAGCACCCACTCCACAATGCAGCTATCC
GATTTTCCAACGATTTCACGAAACGCAAACCCACTGACAATGTTCTGCCC
TCTGAAAATTGAAGAGTCAACCGACTTGTGTATTTGGGTGAAGGTGGAAC
GGCAGCATATTGCACACTAACCGCCGAAGTGACCCAAACCCTGTCCTTGG
TTTTTCCCACGCTGGGTACATTTGGTTTCGTCATGTTATTCGCTTCGCCG
TCGACCTTGTCCTTAGCATCCTCGAACTCGTCCTGATCCAATGGCGGTGG
CTCCTCGTCAAAGTTCACGATGGGACCTAGGCTCTTGGCGCCCAAGCTGT
TGCCCAGGGTGTCAAAAGGCATAGCGGCTCCCTTGGATGAAGTGGGAAAC
GTTGCCTTGCAACTAGACACGCTACTGGGCAGCAGTGGGGTGTTTGAGTC
ACCATCGGAAATGGTACTAACACTACCCTCGCAAGACCGATTTAGACTGC
TGTTCCCATCATCGCTGCTGAGCTGAGCCGTCTCATCGTCATCGCAGATT
TGACCATTGTAAAAGAGCCTACAAAACCGCAAGTTCACGAAGTCGCGGCT
CTTCACCATGCCACCTCCTCCGCCCACGGATACCTGGATA
BO17908.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3522-PB | 1638 | Start1-RB | 1018..1635 | 636..19 | 3065 | 99.8 | Minus |
CG3522-PA | 1752 | Start1-RA | 1018..1529 | 636..125 | 2535 | 99.8 | Minus |
CG3522-PA | 1752 | Start1-RA | 1528..1612 | 103..19 | 425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Start1-RB | 2360 | CG3522-RB | 1391..2008 | 636..19 | 3075 | 99.8 | Minus |
Start1-RD | 1270 | CG3522-RD | 324..918 | 636..19 | 2720 | 96.1 | Minus |
Start1-RC | 2337 | CG3522-RC | 1391..1985 | 636..19 | 2720 | 96.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24576596..24577107 | 636..125 | 2545 | 99.8 | Minus |
2R | 25286936 | 2R | 24577151..24577258 | 126..19 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:50:36 has no hits.
BO17908.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:12 Download gff for
BO17908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3522-PB | 1016..1638 | 18..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:03:40 Download gff for
BO17908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 1389..2008 | 19..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:01:44 Download gff for
BO17908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 1389..2008 | 19..639 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:01:44 Download gff for
BO17908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24577153..24577258 | 19..124 | 100 | | Minus |
2R | 24576594..24577107 | 125..639 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:03:40 Download gff for
BO17908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20464117..20464630 | 125..639 | 99 | -> | Minus |
arm_2R | 20464676..20464781 | 19..124 | 100 | | Minus |
BO17908.5prime Sequence
738 bp (656 high quality bases) assembled on 2006-10-13
> BO17908.5prime
GAAGTTATCAGTCGACATGTCCAATATGGATCCAAGTGATGTCCGCAGTA
CCGCCCAGCTCATCCTGGCCAACGCTCGGCAGGGAAATAGCGCTTACAAC
ATGCAGTATGATATGTCACGGGCACATTCCATAAACCTGATTACGGAGGA
CTTCTTGGCCGGTTATATGCAGGATGGCAGGATGTCCGTGGTTCGAAGGT
TTTTCTGCCTCTTCGTCACATTCGACTTGGTCTTCGTTTCGCTGCTGTGG
CTCATTTGCATTGTGATCAATGGAGACAATATATTCACTGCCTTCCACAA
ACAAATCGTGGAGTACACCATCTACAAATCGCTCTTTGATGTTGTGGCAG
TCGCTATCTGCCGATTTTTGGTGCTCATATTTTTCTACGCCATATTGTAC
ATCAATCACTGGTCCATCATAGCGCTCTCTACAAGTGGGTCTTGCTTGTT
CCTCATCTCGAAGGTGTTTGTGTTCGATTGGCTGGATTCAAAGCAGCAGG
TATTTGAGGTAATCCTCATAATAACCTCGTTCATACTGGCTTGGGGAGAA
GCCTGGTTCCTGGACTGTAGGGTGATTCCTCAAGAGCGACATGCCCAACA
CTATTTCCGGACTATGACTTCAAATGATCGCACACCCATGGAACAGCCTG
CCATTTTGATTGAGCAAGAACGGCCTCCGCAAAGTGTAACCGATTTTTAT
TCACTCATGGACACGGCTCGTCATTCCGACGAGGAGGA
BO17908.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3522-PB | 1638 | Start1-RB | 1..722 | 17..738 | 3610 | 100 | Plus |
CG3522-PA | 1752 | Start1-RA | 1..722 | 17..738 | 3610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Start1-RC | 2337 | CG3522-RC | 369..1095 | 12..738 | 3620 | 99.9 | Plus |
Start1-RA | 2170 | CG3522-RA | 202..928 | 12..738 | 3620 | 99.9 | Plus |
Start1-RB | 2360 | CG3522-RB | 369..1095 | 12..738 | 3620 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24575361..24575520 | 265..424 | 800 | 100 | Plus |
2R | 25286936 | 2R | 24575151..24575299 | 117..265 | 745 | 100 | Plus |
2R | 25286936 | 2R | 24575691..24575823 | 479..611 | 665 | 100 | Plus |
2R | 25286936 | 2R | 24575877..24576003 | 612..738 | 635 | 100 | Plus |
2R | 25286936 | 2R | 24574985..24575089 | 12..116 | 510 | 99 | Plus |
2R | 25286936 | 2R | 24575575..24575629 | 424..478 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:04:43 has no hits.
BO17908.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:14 Download gff for
BO17908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3522-PA | 1..721 | 17..737 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:47:25 Download gff for
BO17908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 362..1094 | 6..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:35 Download gff for
BO17908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 362..1094 | 6..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:35 Download gff for
BO17908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24574978..24575089 | 6..116 | 96 | -> | Plus |
2R | 24575151..24575299 | 117..265 | 100 | -> | Plus |
2R | 24575362..24575520 | 266..424 | 100 | -> | Plus |
2R | 24575576..24575629 | 425..478 | 100 | -> | Plus |
2R | 24575691..24575823 | 479..611 | 100 | -> | Plus |
2R | 24575877..24576002 | 612..737 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:47:25 Download gff for
BO17908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20462501..20462612 | 6..116 | 96 | -> | Plus |
arm_2R | 20462674..20462822 | 117..265 | 100 | -> | Plus |
arm_2R | 20462885..20463043 | 266..424 | 100 | -> | Plus |
arm_2R | 20463099..20463152 | 425..478 | 100 | -> | Plus |
arm_2R | 20463214..20463346 | 479..611 | 100 | -> | Plus |
arm_2R | 20463400..20463525 | 612..737 | 100 | | Plus |
BO17908.complete Sequence
1669 bp assembled on 2006-12-18
GenBank Submission: FJ634252
> BO17908.complete
GAAGTTATCAGTCGACATGTCCAATATGGATCCAAGTGATGTCCGCAGTA
CCGCCCAGCTCATCCTGGCCAACGCTCGGCAGGGAAATAGCGCTTACAAC
ATGCAGTATGATATGTCACGGGCACATTCCATAAACCTGATTACGGAGGA
CTTCTTGGCCGGTTATATGCAGGATGGCAGGATGTCCGTGGTTCGAAGGT
TTTTCTGCCTCTTCGTCACATTCGACTTGGTCTTCGTTTCGCTGCTGTGG
CTCATTTGCATTGTGATCAATGGAGACAATATATTCACTGCCTTCCACAA
ACAAATCGTGGAGTACACCATCTACAAATCGCTCTTTGATGTTGTGGCAG
TCGCTATCTGCCGATTTTTGGTGCTCATATTTTTCTACGCCATATTGTAC
ATCAATCACTGGTCCATCATAGCGCTCTCTACAAGTGGGTCTTGCTTGTT
CCTCATCTCGAAGGTGTTTGTGTTCGATTGGCTGGATTCAAAGCAGCAGG
TATTTGAGGTAATCCTCATAATAACCTCGTTCATACTGGCTTGGGGAGAA
GCCTGGTTCCTGGACTGTAGGGTGATTCCTCAAGAGCGACATGCCCAACA
CTATTTCCGGACTATGACTTCAAATGATCGCACACCCATGGAACAGCCTG
CCATTTTGATTGAGCAAGAACGGCCTCCGCAAAGTGTAACCGATTTTTAT
TCACTCATGGACACGGCTCGTCATTCCGACGAGGAGGATGAGTTGGATGA
TGAGTACACACAAATGGGATTGGATTGCCTTCGAAAGGCCTACGAGATCA
TCGAGTCAAGTGACTGGAAGGTGGAAAAAGTTAACCAGAAAGGCGACACC
ATACACAGCACTCAGCGCGACAAGATTGGAAAGATCTACAAGTTGACGGC
CCGCATCAAGTATCCTGCAAAGGCTCTGATGGAAGATCTGTTCTATCGCA
TTGAAGACTGTCCCAAGTGGAATCCTGCTCTTTTGGAGTCCAAGATAGTA
CGCAAAATCAACTCCTACACCGATATTACCTATCAGGTATCCGTGGGCGG
AGGAGGTGGCATGGTGAAGAGCCGCGACTTCGTGAACTTGCGGTCTTGTA
GGCTCTTTTACAATGGTCAAATCTGCGATGACGATGAGACGGCTCAGCTC
AGCAGCGATGATGGGAACAGCAGTCTAAATCGGTCTTGCGAGGGTAGTGT
TAGTACCATTTCCGATGGTGACTCAAACACCCCACTGCTGCCCAGTAGCG
TGTCTAGTTGCAAGGCAACGTTTCCCACTTCATCCAAGGGAGCCGCTATG
CCTTTTGACACCCTGGGCAACAGCTTGGGCGCCAAGAGCCTAGGTCCCAT
CGTGAACTTTGACGAGGAGCCACCGCCATTGGATCAGGACGAGTTCGAGG
ATGCTAAGGACAAGGTCGACGGCGAAGCGAATAACATGACGAAACCAAAT
GTACCCAGCGTGGGAAAAACCAAGGACAGGGTTTGGGTCACTTCGGCGGT
TAGTGTGCAATATGCTGCCGTTCCACCTTCACCCAAATACACAAGTCGGT
TGACTCTTCAATTTTCAGAGGGCAGAACATTGTCAGTGGGTTTGCGTTTC
GTGAAATCGTTGGAAAATCGGATAGCTGCATTGTGGAGTGGGTGCTTTGC
CGCAAGCTTTCTAGACCAT
BO17908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Start1-RB | 1638 | CG3522-PB | 1..1635 | 17..1651 | 8175 | 100 | Plus |
Start1-RC | 1752 | CG3522-PC | 1..1529 | 17..1545 | 7645 | 100 | Plus |
Start1-RA | 1752 | CG3522-PA | 1..1529 | 17..1545 | 7645 | 100 | Plus |
Start1-RC | 1752 | CG3522-PC | 1528..1612 | 1567..1651 | 425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Start1-RB | 2360 | CG3522-RB | 369..2008 | 12..1651 | 8185 | 99.9 | Plus |
Start1-RC | 2337 | CG3522-RC | 369..1902 | 12..1545 | 7655 | 99.9 | Plus |
Start1-RA | 2170 | CG3522-RA | 202..1735 | 12..1545 | 7655 | 99.9 | Plus |
Start1-RC | 2337 | CG3522-RC | 1901..1985 | 1567..1651 | 425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24576566..24577107 | 1004..1545 | 2710 | 100 | Plus |
2R | 25286936 | 2R | 24575361..24575520 | 265..424 | 800 | 100 | Plus |
2R | 25286936 | 2R | 24576193..24576347 | 745..899 | 775 | 100 | Plus |
2R | 25286936 | 2R | 24575151..24575299 | 117..265 | 745 | 100 | Plus |
2R | 25286936 | 2R | 24575877..24576011 | 612..746 | 675 | 100 | Plus |
2R | 25286936 | 2R | 24575691..24575823 | 479..611 | 665 | 100 | Plus |
2R | 25286936 | 2R | 24577151..24577258 | 1544..1651 | 540 | 100 | Plus |
2R | 25286936 | 2R | 24576400..24576505 | 898..1003 | 530 | 100 | Plus |
2R | 25286936 | 2R | 24574985..24575089 | 12..116 | 510 | 99 | Plus |
2R | 25286936 | 2R | 24575575..24575629 | 424..478 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:22:38 has no hits.
BO17908.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:00 Download gff for
BO17908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 1..1638 | 17..1652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:34 Download gff for
BO17908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 344..1990 | 6..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:19 Download gff for
BO17908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 374..2008 | 17..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:00 Download gff for
BO17908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 344..1990 | 6..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:35 Download gff for
BO17908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Start1-RB | 374..2008 | 17..1653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:35 Download gff for
BO17908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24575362..24575520 | 266..424 | 100 | -> | Plus |
2R | 24575576..24575629 | 425..478 | 100 | -> | Plus |
2R | 24575691..24575823 | 479..611 | 100 | -> | Plus |
2R | 24575877..24576010 | 612..745 | 100 | -> | Plus |
2R | 24576194..24576346 | 746..898 | 100 | -> | Plus |
2R | 24576401..24576505 | 899..1003 | 100 | -> | Plus |
2R | 24574990..24575089 | 17..116 | 100 | -> | Plus |
2R | 24575151..24575299 | 117..265 | 100 | -> | Plus |
2R | 24576566..24577107 | 1004..1545 | 100 | -> | Plus |
2R | 24577153..24577258 | 1546..1653 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:19 Download gff for
BO17908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20463717..20463869 | 746..898 | 100 | -> | Plus |
arm_2R | 20463924..20464028 | 899..1003 | 100 | -> | Plus |
arm_2R | 20462513..20462612 | 17..116 | 100 | -> | Plus |
arm_2R | 20462674..20462822 | 117..265 | 100 | -> | Plus |
arm_2R | 20462885..20463043 | 266..424 | 100 | -> | Plus |
arm_2R | 20463099..20463152 | 425..478 | 100 | -> | Plus |
arm_2R | 20463214..20463346 | 479..611 | 100 | -> | Plus |
arm_2R | 20463400..20463533 | 612..745 | 100 | -> | Plus |
arm_2R | 20464089..20464630 | 1004..1545 | 100 | -> | Plus |
arm_2R | 20464676..20464781 | 1546..1653 | 98 | | Plus |
BO17908.pep Sequence
Translation from 16 to 1669
> BO17908.pep
MSNMDPSDVRSTAQLILANARQGNSAYNMQYDMSRAHSINLITEDFLAGY
MQDGRMSVVRRFFCLFVTFDLVFVSLLWLICIVINGDNIFTAFHKQIVEY
TIYKSLFDVVAVAICRFLVLIFFYAILYINHWSIIALSTSGSCLFLISKV
FVFDWLDSKQQVFEVILIITSFILAWGEAWFLDCRVIPQERHAQHYFRTM
TSNDRTPMEQPAILIEQERPPQSVTDFYSLMDTARHSDEEDELDDEYTQM
GLDCLRKAYEIIESSDWKVEKVNQKGDTIHSTQRDKIGKIYKLTARIKYP
AKALMEDLFYRIEDCPKWNPALLESKIVRKINSYTDITYQVSVGGGGGMV
KSRDFVNLRSCRLFYNGQICDDDETAQLSSDDGNSSLNRSCEGSVSTISD
GDSNTPLLPSSVSSCKATFPTSSKGAAMPFDTLGNSLGAKSLGPIVNFDE
EPPPLDQDEFEDAKDKVDGEANNMTKPNVPSVGKTKDRVWVTSAVSVQYA
AVPPSPKYTSRLTLQFSEGRTLSVGLRFVKSLENRIAALWSGCFAASFLD
H
BO17908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Start1-PB | 545 | CG3522-PB | 1..545 | 1..545 | 2842 | 100 | Plus |
Start1-PC | 583 | CG3522-PC | 1..509 | 1..509 | 2662 | 100 | Plus |
Start1-PA | 583 | CG3522-PA | 1..509 | 1..509 | 2662 | 100 | Plus |
Start1-PD | 343 | CG3522-PD | 4..269 | 244..509 | 1398 | 100 | Plus |