Clone Sequence Records
BO17914.3prime Sequence
806 bp (692 high quality bases) assembled on 2006-10-13
> BO17914.3prime
ATGGTCTAGAAAGCTTGCTTTTTGCGCTAACTTATTGATATAGCTCTGGA
TCGCTTTTTCGATGCGTTCAGTTGAGTAAATCAGTACGGCTTTGATATCT
TCCAGCACAGTTCGAAGAATTAAATCCCAATTCTGATCGGACTTTCCGAC
TTTGGGTTCTTGGATGAGTTCCCTTGGGGCATCGTAAAACTCTTTTAAAG
ATTCAACCTTCTTTATGACGAAATTGAAAGCGTTCGATGCCTCCCTAGTG
ACCTCTTCATATTCAGAAGAAGCATCCTCATCTTTAGAAGAAGTATCCTC
ATCTTTAGACGGAGCATCCTCATCTTTAGAAGAAGTATTCTCATCTTTGG
AAGAAGCATCCTCATCTTTAGAAGAAGCATCCTCATATTTAGAAGAAGTA
TCCCCATTTTTAGAAGAAGCATCCTCATCTTCAGAAGAAGCATACTGTTC
CTGAGATGCAAGTTCATATACACCACTTCCGACGGTTGGATTAAATTTGG
TTAGTTTGGCCGACCATCCTTGGGAAAGCCCCGAAGATGTGGATGACTCT
TCGTCATCATCAGTGAGATCATTCTTGGTGTCCATTGGCGCTAGCTCTAC
TTTTAAGATTAAATTTACGTTTGTCTCTTGGGAACTCTGCGAGCTTTTGT
ACTCGACAAGCGGATTGGAGCGGCGCTGCATTACCTTGCGCTCCATATGA
TTGGTATTGAATTCAAGAGCCTTGCGCTTCCTAATGCGAGGAGCTTCTTT
TGGGCTTGATGCCTTCGAAGAAGCAAAGTAACCGTTTGACGAAGAAAAGG
GCGCGA
BO17914.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-PA | 1434 | CG12728-RA | 644..1431 | 806..19 | 3865 | 99.6 | Minus |
CG32756-PA | 1380 | CG32756-RA | 644..938 | 806..512 | 1375 | 98.6 | Minus |
CG32756-PA | 1380 | CG32756-RA | 947..1112 | 506..341 | 705 | 96.9 | Minus |
CG32756-PA | 1380 | CG32756-RA | 1010..1202 | 422..227 | 335 | 86.7 | Minus |
CG32756-PA | 1380 | CG32756-RA | 1031..1118 | 443..356 | 215 | 89.7 | Minus |
CG32756-PA | 1380 | CG32756-RA | 1302..1339 | 106..69 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-RB | 2374 | CG12728-RB | 721..1508 | 806..19 | 3895 | 99.6 | Minus |
CG12728-RA | 1746 | CG12728-RA | 721..1508 | 806..19 | 3895 | 99.6 | Minus |
CG32756-RB | 2397 | CG32756-RB | 723..1438 | 806..49 | 2240 | 87.3 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1087..1228 | 398..257 | 455 | 88 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1129..1270 | 440..299 | 455 | 88 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1087..1228 | 398..257 | 455 | 88 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1129..1270 | 440..299 | 455 | 88 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1084..1207 | 380..257 | 410 | 88.7 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1147..1270 | 443..320 | 410 | 88.7 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1084..1207 | 380..257 | 410 | 88.7 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1147..1270 | 443..320 | 410 | 88.7 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1084..1177 | 359..266 | 305 | 88.3 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1168..1261 | 443..350 | 305 | 88.3 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1084..1177 | 359..266 | 305 | 88.3 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1168..1261 | 443..350 | 305 | 88.3 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1087..1165 | 335..257 | 275 | 89.9 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1192..1270 | 440..362 | 275 | 89.9 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1087..1165 | 335..257 | 275 | 89.9 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1192..1270 | 440..362 | 275 | 89.9 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1084..1144 | 317..257 | 185 | 86.9 | Minus |
CG12728-RB | 2374 | CG12728-RB | 1210..1270 | 443..383 | 185 | 86.9 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1084..1144 | 317..257 | 185 | 86.9 | Minus |
CG12728-RA | 1746 | CG12728-RA | 1210..1270 | 443..383 | 185 | 86.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5943671..5944384 | 732..19 | 3555 | 99.9 | Minus |
X | 23542271 | X | 5946753..5947210 | 732..275 | 1800 | 93.7 | Minus |
X | 23542271 | X | 5943963..5944104 | 398..257 | 455 | 88 | Minus |
X | 23542271 | X | 5944005..5944146 | 440..299 | 455 | 88 | Minus |
X | 23542271 | X | 5947045..5947157 | 380..268 | 415 | 91.2 | Minus |
X | 23542271 | X | 5944023..5944146 | 443..320 | 410 | 88.7 | Minus |
X | 23542271 | X | 5943960..5944083 | 380..257 | 410 | 88.7 | Minus |
X | 23542271 | X | 5947048..5947394 | 398..49 | 390 | 75 | Minus |
X | 23542271 | X | 5943536..5943612 | 806..730 | 355 | 97.4 | Minus |
X | 23542271 | X | 5946618..5946694 | 806..730 | 355 | 97.4 | Minus |
X | 23542271 | X | 5947085..5947210 | 445..317 | 325 | 85.3 | Minus |
X | 23542271 | X | 5947045..5947147 | 359..257 | 320 | 87.4 | Minus |
X | 23542271 | X | 5943960..5944053 | 359..266 | 305 | 88.3 | Minus |
X | 23542271 | X | 5944044..5944137 | 443..350 | 305 | 88.3 | Minus |
X | 23542271 | X | 5943963..5944041 | 335..257 | 275 | 89.9 | Minus |
X | 23542271 | X | 5944068..5944146 | 440..362 | 275 | 89.9 | Minus |
X | 23542271 | X | 5947048..5947126 | 335..257 | 275 | 89.9 | Minus |
X | 23542271 | X | 5943960..5944020 | 317..257 | 185 | 86.9 | Minus |
X | 23542271 | X | 5944086..5944146 | 443..383 | 185 | 86.9 | Minus |
X | 23542271 | X | 5947045..5947105 | 317..257 | 185 | 86.9 | Minus |
Blast to na_te.dros performed 2015-02-13 16:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader1 | 4032 | invader1 INVADER 4032bp | 409..437 | 542..570 | 109 | 86.2 | Plus |
BO17914.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:19 Download gff for
BO17914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-PA | 645..1434 | 15..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:38:58 Download gff for
BO17914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 722..1514 | 10..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:41:14 Download gff for
BO17914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 722..1514 | 10..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:41:14 Download gff for
BO17914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5943537..5943611 | 731..805 | 97 | -> | Minus |
X | 5943673..5944390 | 10..730 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:38:58 Download gff for
BO17914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5837570..5837644 | 731..805 | 97 | -> | Minus |
arm_X | 5837706..5838423 | 10..730 | 99 | | Minus |
BO17914.5prime Sequence
813 bp (706 high quality bases) assembled on 2006-10-13
> BO17914.5prime
GAAGTTATCAGTCGACATGCTATTGAAAGTAGTGAATATAAATGGCTTGC
AGCACCTGTTCGCCTGCACTGAGGGGCAGCATGATGAAACCCTAACTATT
CACGTTTTCCGTCCTCGCGAGAAGTGGACTTACTCCGAGACTTTGATGAA
ACGCGATTACCAGCAGCGTTTGAAAACGCTCAACGCGCGTGTGAAGTTTC
CCGAGGAATTGGTGCGCCAGGTCCTGCTCAACAAGGATCCATTGCATGTC
GAACAGGATTACCAGCACCCATTGAACGTCCTGAAACTGAAGTATGCCAT
GGCGAATTTCAAAGTTTTCCTCAAGTGGGAATGGCACCTGAGACCCATGG
ATGCCGCACAGTTGTATAGCCAAATGTTCTTGAACACAATGTCCACGGCT
TTGGGACTACGGGTTCAGATACCCCTTCTGCTAGGGATTATCCATGCCAA
GGACAAGGAGCTGAACCAGTATCGCACCGAGGGATGCCAGCTGCGCAAAG
TGACTGTGGAAACCAAGCCCTTTGATCTCGAGGCTTTTATGAATAAGCAC
AAGCAATTGCTGGACTGTTCCGCTGCCTACCAGAAGGCGCAGAGTACTTT
TTTTGCTGATAAGCCATCGCCTAATTGGACATCGCTTTCTTCGCCATGGG
CACGGGATGTCGCGCCCTATTCTTCGTCAAACGGCTACTTTGCTTCTTCG
AAGGCATCAAGCCCAAAAGAAGCTCCTCGCATTANGAAGCGCAAGGCTCT
TGAAATCATACCAATCATATGGAGCGCAAGGTAATGCAGCGCCGCTCCCA
TCCGCTTGTCAAG
BO17914.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-PA | 1434 | CG12728-RA | 1..795 | 17..810 | 3891 | 99.6 | Plus |
CG32756-PA | 1380 | CG32756-RA | 1..795 | 17..810 | 3766 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-RB | 2374 | CG12728-RB | 78..872 | 17..810 | 3924 | 99.6 | Plus |
CG12728-RA | 1746 | CG12728-RA | 78..872 | 17..810 | 3924 | 99.6 | Plus |
CG32756-RB | 2397 | CG32756-RB | 80..874 | 17..810 | 3849 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5943375..5943610 | 499..734 | 1180 | 100 | Plus |
X | 23542271 | X | 5946457..5946692 | 499..734 | 1135 | 98.7 | Plus |
X | 23542271 | X | 5942903..5943088 | 176..361 | 930 | 100 | Plus |
X | 23542271 | X | 5945981..5946166 | 176..361 | 930 | 100 | Plus |
X | 23542271 | X | 5942683..5942841 | 17..175 | 795 | 100 | Plus |
X | 23542271 | X | 5945761..5945919 | 17..175 | 795 | 100 | Plus |
X | 23542271 | X | 5943153..5943293 | 360..500 | 705 | 100 | Plus |
X | 23542271 | X | 5946231..5946368 | 360..497 | 675 | 99.3 | Plus |
X | 23542271 | X | 5943673..5943748 | 736..810 | 315 | 97.4 | Plus |
X | 23542271 | X | 5946755..5946830 | 736..810 | 315 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:30:21 has no hits.
BO17914.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:20 Download gff for
BO17914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-PA | 1..798 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:21:55 Download gff for
BO17914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 73..875 | 12..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:42:16 Download gff for
BO17914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 73..875 | 12..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:42:16 Download gff for
BO17914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5942678..5942841 | 12..175 | 98 | -> | Plus |
X | 5942903..5943088 | 176..361 | 100 | -> | Plus |
X | 5943155..5943293 | 362..500 | 100 | -> | Plus |
X | 5943377..5943611 | 501..735 | 99 | -> | Plus |
X | 5943673..5943751 | 736..813 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:21:55 Download gff for
BO17914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5836711..5836874 | 12..175 | 98 | -> | Plus |
arm_X | 5836936..5837121 | 176..361 | 100 | -> | Plus |
arm_X | 5837188..5837326 | 362..500 | 100 | -> | Plus |
arm_X | 5837410..5837644 | 501..735 | 99 | -> | Plus |
arm_X | 5837706..5837784 | 736..813 | 96 | | Plus |
BO17914.complete Sequence
1465 bp assembled on 2007-03-23
GenBank Submission: FJ634253
> BO17914.complete
GAAGTTATCAGTCGACATGCTATTGAAAGTAGTGAATATAAATGGCTTGC
AGCACCTGTTCGCCTGCACTGAGGGGCAGCATGATGAAACCCTAACTATT
CACGTTTTCCGTCCTCGCGAGAAGTGGACTTACTCCGAGACTTTGATGAA
ACGCGATTACCAGCAGCGTTTGAAAACGCTCAACGCGCGTGTGAAGTTTC
CCGAGGAATTGGTGCGCCAGGTCCTGCTCAACAAGGATCCATTGCATGTC
GAACAGGATTACCAGCACCCATTGAACGTCCTGAAACTGAAGTATGCCAT
GGCGAATTTCAAAGTTTTCCTCAAGTGGGAATGGCACCTGAGACCCATGG
ATGCCGCACAGTTGTATAGCCAAATGTTCTTGAACACAATGTCCACGGCT
TTGGGACTACGGGTTCAGATACCCCTTCTGCTAGGGATTATCCATGCCAA
GGACAAGGAGCTGAACCAGTATCGCACCGAGGGATGCCAGCTGCGCAAAG
TGACTGTGGAAACCAAGCCCTTTGATCTCGAGGCTTTTATGAATAAGCAC
AAGCAATTGCTGGACTGTTCCGCTGCCTACCAGAAGGCGCAGAGTACTTT
TTTTGCTGATAAGCCATCGCCTAATTGGACATCGCTTTCTTCGCCATGGG
CACGGGATGTCGCGCCCTATTCTTCGTCAAACGGCTACTTTGCTTCTTCG
AAGGCATCAAGCCCAAAAGAAGCTCCTCGCATTAGGAAGCGCAAGGCTCT
TGAAATCAATACCAATCATATGGAGCGCAAGGTAATGCAGCGCCGCTCCA
ATCCGCTTGTCGAGTACAAAAGCTCGCAGAGTTCCCAAGAGACAAACGTA
AATTTAATCTTAAAAGTAGAGCTAGCGCCAATGGACACCAAGAATGATCT
CACTGATGATGACGAAGAGTCATCCACATCTTCGGGGCTTTCCCAAGGAT
GGTCGGCCAAACTAACCAAATTTAATCCAACCGTCGGAAGTGGTGTATAT
GAACTTGCATCTCAGGAACAGTATGCTTCTTCTGAAGATGAGGATGCTTC
TTCTAAAAATGGGGATACTTCTTCTAAATATGAGGATGCTTCTTCTAAAG
ATGAGGATGCTTCTTCCAAAGATGAGAATACTTCTTCTAAAGATGAGGAT
GCTCCGTCTAAAGATGAGGATACTTCTTCTAAAGATGAGGATGCTTCTTC
TGAATATGAAGAGGTCACTAGGGAGGCATCGAACGCTTTCAATTTCGTCA
TAAAGAAGGTTGAATCTTTAAAAGAGTTTTACGATGCCCCAAGGGAACTC
ATCCAAGAACCCAAAGTCGGAAAGTCCGATCAGAATTGGGATTTAATTCT
TCGAACTGTGCTGGAAGATATCAAAGCCGTACTGATTTACTCAACTGAAC
GCATCGAAAAAGCGATCCAGAGCTATATCAATAAGTTAGCGCAAAAAGCA
AGCTTTCTAGACCAT
BO17914.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-RB | 1434 | CG12728-PB | 1..1431 | 17..1447 | 7155 | 100 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
CG32756-RB | 1380 | CG32756-PB | 1..1175 | 17..1191 | 5325 | 97.2 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1010..1151 | 1068..1209 | 455 | 88 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1052..1193 | 1026..1167 | 455 | 88 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1010..1151 | 1068..1209 | 455 | 88 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1052..1193 | 1026..1167 | 455 | 88 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1007..1130 | 1086..1209 | 410 | 88.7 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1070..1193 | 1023..1146 | 410 | 88.7 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1007..1130 | 1086..1209 | 410 | 88.7 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1070..1193 | 1023..1146 | 410 | 88.7 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1007..1100 | 1107..1200 | 305 | 88.3 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1091..1184 | 1023..1116 | 305 | 88.3 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1007..1100 | 1107..1200 | 305 | 88.3 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1091..1184 | 1023..1116 | 305 | 88.3 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1010..1088 | 1131..1209 | 275 | 89.9 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1115..1193 | 1026..1104 | 275 | 89.9 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1010..1088 | 1131..1209 | 275 | 89.9 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1115..1193 | 1026..1104 | 275 | 89.9 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1007..1067 | 1149..1209 | 185 | 86.9 | Plus |
CG12728-RB | 1434 | CG12728-PB | 1133..1193 | 1023..1083 | 185 | 86.9 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1007..1067 | 1149..1209 | 185 | 86.9 | Plus |
CG12728-RA | 1434 | CG12728-PA | 1133..1193 | 1023..1083 | 185 | 86.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-RB | 2374 | CG12728-RB | 78..1508 | 17..1447 | 7155 | 100 | Plus |
CG12728-RA | 1746 | CG12728-RA | 78..1508 | 17..1447 | 7155 | 100 | Plus |
CG32756-RB | 2397 | CG32756-RB | 80..1254 | 17..1191 | 5325 | 97.2 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1087..1228 | 1068..1209 | 455 | 88 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1129..1270 | 1026..1167 | 455 | 88 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1087..1228 | 1068..1209 | 455 | 88 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1129..1270 | 1026..1167 | 455 | 88 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1084..1207 | 1086..1209 | 410 | 88.7 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1147..1270 | 1023..1146 | 410 | 88.7 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1084..1207 | 1086..1209 | 410 | 88.7 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1147..1270 | 1023..1146 | 410 | 88.7 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1084..1177 | 1107..1200 | 305 | 88.3 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1168..1261 | 1023..1116 | 305 | 88.3 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1084..1177 | 1107..1200 | 305 | 88.3 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1168..1261 | 1023..1116 | 305 | 88.3 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1087..1165 | 1131..1209 | 275 | 89.9 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1192..1270 | 1026..1104 | 275 | 89.9 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1087..1165 | 1131..1209 | 275 | 89.9 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1192..1270 | 1026..1104 | 275 | 89.9 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1084..1144 | 1149..1209 | 185 | 86.9 | Plus |
CG12728-RB | 2374 | CG12728-RB | 1210..1270 | 1023..1083 | 185 | 86.9 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1210..1270 | 1023..1083 | 185 | 86.9 | Plus |
CG12728-RA | 1746 | CG12728-RA | 1084..1144 | 1149..1209 | 185 | 86.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5943671..5944384 | 734..1447 | 3570 | 100 | Plus |
X | 23542271 | X | 5946753..5947210 | 734..1191 | 1815 | 93.9 | Plus |
X | 23542271 | X | 5943375..5943612 | 499..736 | 1190 | 100 | Plus |
X | 23542271 | X | 5946457..5946694 | 499..736 | 1145 | 98.7 | Plus |
X | 23542271 | X | 5942903..5943088 | 176..361 | 930 | 100 | Plus |
X | 23542271 | X | 5945981..5946166 | 176..361 | 930 | 100 | Plus |
X | 23542271 | X | 5942683..5942841 | 17..175 | 795 | 100 | Plus |
X | 23542271 | X | 5945761..5945919 | 17..175 | 795 | 100 | Plus |
X | 23542271 | X | 5943153..5943293 | 360..500 | 705 | 100 | Plus |
X | 23542271 | X | 5946231..5946368 | 360..497 | 675 | 99.3 | Plus |
X | 23542271 | X | 5943963..5944104 | 1068..1209 | 455 | 88 | Plus |
X | 23542271 | X | 5944005..5944146 | 1026..1167 | 455 | 88 | Plus |
X | 23542271 | X | 5947045..5947157 | 1086..1198 | 415 | 91.2 | Plus |
X | 23542271 | X | 5943960..5944083 | 1086..1209 | 410 | 88.7 | Plus |
X | 23542271 | X | 5944023..5944146 | 1023..1146 | 410 | 88.7 | Plus |
X | 23542271 | X | 5947048..5947394 | 1068..1417 | 390 | 75 | Plus |
X | 23542271 | X | 5947085..5947210 | 1021..1149 | 325 | 85.3 | Plus |
X | 23542271 | X | 5947045..5947147 | 1107..1209 | 320 | 87.4 | Plus |
X | 23542271 | X | 5943960..5944053 | 1107..1200 | 305 | 88.3 | Plus |
X | 23542271 | X | 5944044..5944137 | 1023..1116 | 305 | 88.3 | Plus |
X | 23542271 | X | 5943963..5944041 | 1131..1209 | 275 | 89.9 | Plus |
X | 23542271 | X | 5944068..5944146 | 1026..1104 | 275 | 89.9 | Plus |
X | 23542271 | X | 5947048..5947126 | 1131..1209 | 275 | 89.9 | Plus |
X | 23542271 | X | 5943960..5944020 | 1149..1209 | 185 | 86.9 | Plus |
X | 23542271 | X | 5944086..5944146 | 1023..1083 | 185 | 86.9 | Plus |
X | 23542271 | X | 5947045..5947105 | 1149..1209 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:20:16 has no hits.
BO17914.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:54 Download gff for
BO17914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 1..1434 | 17..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:11 Download gff for
BO17914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 71..1509 | 12..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:31:20 Download gff for
BO17914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 78..1503 | 17..1442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:54 Download gff for
BO17914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 71..1509 | 12..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:08 Download gff for
BO17914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12728-RA | 78..1503 | 17..1442 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:08 Download gff for
BO17914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5942683..5942841 | 17..175 | 100 | -> | Plus |
X | 5942903..5943088 | 176..361 | 100 | -> | Plus |
X | 5943155..5943293 | 362..500 | 100 | -> | Plus |
X | 5943377..5943611 | 501..735 | 100 | -> | Plus |
X | 5943673..5944379 | 736..1442 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:31:20 Download gff for
BO17914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5836716..5836874 | 17..175 | 100 | -> | Plus |
arm_X | 5836936..5837121 | 176..361 | 100 | -> | Plus |
arm_X | 5837188..5837326 | 362..500 | 100 | -> | Plus |
arm_X | 5837410..5837644 | 501..735 | 100 | -> | Plus |
arm_X | 5837706..5838412 | 736..1442 | 100 | | Plus |
BO17914.pep Sequence
Translation from 16 to 1465
> BO17914.pep
MLLKVVNINGLQHLFACTEGQHDETLTIHVFRPREKWTYSETLMKRDYQQ
RLKTLNARVKFPEELVRQVLLNKDPLHVEQDYQHPLNVLKLKYAMANFKV
FLKWEWHLRPMDAAQLYSQMFLNTMSTALGLRVQIPLLLGIIHAKDKELN
QYRTEGCQLRKVTVETKPFDLEAFMNKHKQLLDCSAAYQKAQSTFFADKP
SPNWTSLSSPWARDVAPYSSSNGYFASSKASSPKEAPRIRKRKALEINTN
HMERKVMQRRSNPLVEYKSSQSSQETNVNLILKVELAPMDTKNDLTDDDE
ESSTSSGLSQGWSAKLTKFNPTVGSGVYELASQEQYASSEDEDASSKNGD
TSSKYEDASSKDEDASSKDENTSSKDEDAPSKDEDTSSKDEDASSEYEEV
TREASNAFNFVIKKVESLKEFYDAPRELIQEPKVGKSDQNWDLILRTVLE
DIKAVLIYSTERIEKAIQSYINKLAQKASFLDH
BO17914.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12728-PB | 477 | CG12728-PB | 1..477 | 1..477 | 2449 | 100 | Plus |
CG12728-PA | 477 | CG12728-PA | 1..477 | 1..477 | 2449 | 100 | Plus |
CG32756-PB | 459 | CG32756-PB | 1..459 | 1..473 | 2037 | 85.7 | Plus |
CG32756-PA | 459 | CG32756-PA | 1..459 | 1..473 | 2037 | 85.7 | Plus |
CG14692-PE | 2851 | CG14692-PE | 1136..1386 | 182..442 | 164 | 26.3 | Plus |