Clone BO17917 Report

Search the DGRC for BO17917

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG8108-RA
Protein status:BO17917.pep: validated full length
Sequenced Size:2791

Clone Sequence Records

BO17917.3prime Sequence

711 bp (639 high quality bases) assembled on 2006-10-13

> BO17917.3prime
ATGGTCTAGAAAGCTTGCCTTGGAGTCGGCGGCTGCCGCATTGCTGGCGG
ACTTAGTGGCAGCTTTAATGGCGGCCGCCGAAGTGCGCTTCACGCTGACC
AAGACATTGCGCTTCGTGGAAGCCGGACCAGGTTTGGTTGCTTTTGCAGT
CGGTTTGGGCGTTGCCATCTTTGCCGGCTGGCTGGCAGCAGCGGTGGTCT
TGGCCGTTGGTGTGGTTGGAGCAGAGGCAGCATGCTTTTTCTCCGGCGAC
TTGGCCACCGGCGCGTTTTCTTTCGCAGCTCCCTCATCGGTATCGCCGTT
CGCTTCCTCTTTGCCGTCTTTCGCCTTGTTTTTCTCGCTTTCAATGTCAA
TGTTAAGCACAGACTCGTCCTCTTCATCCTCCTCATCTTCTTTATGACCT
CTTGTCTCTACTTCTGCCAGGAGGTCACCCAGATCCTTGTCCACCTCCTC
CCACATCTTTTTATCATTGGTCGCATCACCCTCTTCTACTTCTGCATCAC
CATCATCATCGTACTCGTCGTCATCCTCGTTTAACTTGCCATCGATGTCC
TCATCGCCATCGGCGTCATCATCACCGGCCTTTTTGTCATCATCGTGATC
GTCCTCATCGCCCTCCTCCGTCTTGTTCTTCTTCTCGGTCTCCTCCTTGT
TTCGCAAGAAAGCCTTCACATGGGAGTGCTGCATGCAATGCTTTTTGGTG
TAACCCTCTAA

BO17917.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8108-PB 2760 CG8108-RB 2074..2757 702..19 3395 99.8 Minus
CG8108-PA 2760 CG8108-RA 2074..2757 702..19 3395 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8108-RA 3160 CG8108-RA 2270..2962 711..19 3420 99.6 Minus
CG8108-RB 3138 CG8108-RB 2248..2940 711..19 3420 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9869725..9870098 711..338 1825 99.2 Minus
3L 28110227 3L 9870156..9870476 339..19 1605 100 Minus
Blast to na_te.dros performed on 2015-02-05 01:35:05 has no hits.

BO17917.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:21 Download gff for BO17917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8108-PA 2067..2760 16..709 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:03:57 Download gff for BO17917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8108-RB 2248..2945 13..711 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:59:05 Download gff for BO17917.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8108-RB 2248..2945 13..711 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:59:05 Download gff for BO17917.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9869725..9870098 338..711 99 -> Minus
3L 9870158..9870481 13..337 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:03:57 Download gff for BO17917.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9862825..9863198 338..711 99 -> Minus
arm_3L 9863258..9863581 13..337 99   Minus

BO17917.5prime Sequence

719 bp (620 high quality bases) assembled on 2006-10-13

> BO17917.5prime
GAAGTTATCAGTCGACATGCGTGGACGCGGCGGATTCATTCCACGTGGTG
GTGGCACCACTCGCGGTGGCTACTACAATAATCGCAATTCCAGCAACTAC
GTTAATACTCGCACCCAGGGCAATTACCGACCCAATAATGGCCGCTACGA
GAATAACTATCACAACAACAACAATCGCTACAACAACCACAACAACAGCG
GCGGAGGAGCAGGAGGCAACAGCCACTACGACAACAGGAGTCGGGACAAG
TTCACTCACCACAACTCGAGCAGCGGGCGCTACGAGTCCAGCTCCTCGAG
CCACAAGCGCAGCTATGACTCATCTCGCGACCGCAGCGATGATCGCAAAC
GCCCGCGTCAAGACGATTACCGTCGCACGTCCTCGTCGAATGATCGCAGC
GATCGACCCTCGTCCTCGTCGCAGAACATTGGCTCCTCGTCATCGAACTA
TCATCAGCGGAGCAGCACCGGCGGTGGTGGTAATAACGGCGGGAGCTCGA
GCTCCTACCGCCCACGCGATGATTCCACCAGCGGCAGCCGGCATCAGCGG
GACGGATCGATGGGTCCTCCGAAGCGGATGATGCGTAGCGTGGCCGGCAC
CAACTATATATCCCGACCCCGTGGCACAATGTCGATGAGGGGCGGCATGA
TGCGCACCGGGATGCGGGTGGGAGGAATGCGCGTTGTGCGCACCAGGGTC
AACGAGTCGAATGACCTGC

BO17917.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8108-PB 2760 CG8108-RB 1..703 17..719 3515 100 Plus
CG8108-PA 2760 CG8108-RA 1..703 17..719 3515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8108-RA 3160 CG8108-RA 206..908 17..719 3515 100 Plus
CG8108-RB 3138 CG8108-RB 184..886 17..719 3515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9867305..9867668 356..719 1790 99.5 Plus
3L 28110227 3L 9865099..9865399 17..317 1505 100 Plus
3L 28110227 3L 9866310..9866362 313..365 250 98.1 Plus
Blast to na_te.dros performed 2015-02-12 06:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2884 93..236 156 59.7 Plus

BO17917.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:21 Download gff for BO17917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8108-PA 1..703 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:11:52 Download gff for BO17917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8108-RB 184..886 17..719 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:36 Download gff for BO17917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8108-RB 184..886 17..719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:36 Download gff for BO17917.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9865099..9865398 17..316 100 -> Plus
3L 9866314..9866361 317..364 100 -> Plus
3L 9867314..9867668 365..719 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:11:52 Download gff for BO17917.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9858199..9858498 17..316 100 -> Plus
arm_3L 9859414..9859461 317..364 100 -> Plus
arm_3L 9860414..9860768 365..719 100   Plus

BO17917.complete Sequence

2791 bp assembled on 2007-03-23

GenBank Submission: FJ634254

> BO17917.complete
GAAGTTATCAGTCGACATGCGTGGACGCGGCGGATTCATTCCACGTGGTG
GTGGCACCACTCGCGGTGGCTACTACAATAATCGCAATTCCAGCAACTAC
GTTAATACTCGCACCCAGGGCAATTACCGACCCAATAATGGCCGCTACGA
GAATAACTATCACAACAACAACAATCGCTACAACAACCACAACAACAGCG
GCGGAGGAGCAGGAGGCAACAGCCACTACGACAACAGGAGTCGGGACAAG
TTCACTCACCACAACTCGAGCAGCGGGCGCTACGAGTCCAGCTCCTCGAG
CCACAAGCGCAGCTATGACTCATCTCGCGACCGCAGCGATGATCGCAAAC
GCCCGCGTCAAGACGATTACCGTCGCACGTCCTCGTCGAATGATCGCAGC
GATCGACCCTCGTCCTCGTCGCAGAACATTGGCTCCTCGTCATCGAACTA
TCATCAGCGGAGCAGCACCGGCGGTGGTGGTAATAACGGCGGGAGCTCGA
GCTCCTACCGCCCACGCGATGATTCCACCAGCGGCAGCCGGCATCAGCGG
GACGGATCGATGGGTCCTCCGAAGCGGATGATGCGTAGCGTGGCCGGCAC
CAACTATATATCCCGACCCCGTGGCACAATGTCGATGAGGGGCGGCATGA
TGCGCACCGGGATGCGGGTGGGAGGAATGCGCGTTGTGCGCACCAGGGTC
AACGAGTCGAATGACCTGCGCACCATGCGCCGCCAGCTGCTCTATGCACA
GCAGAAAGACCGGGCTCGCCTGCTCAAGATTCAGCAGCTGAAAAGCTCGT
TGCGACGACAACGCCAGGGCGGGAATTCCAGCGACGATTCCAGCGGCAAA
GAGGACAAGGACGGCGAAGATGCTGAGAAAAGCAAGAAGAAGAAAGGCAA
GGACAAGGACGCCGATGGAGGCGATGAATCCGACGACGACGATGACGATG
AAGAAGACGATGATGAGAAGGACGAGAAGAGCAAGAAGACTTCGCCTGGT
AAAAAACGCAACAAGTCGGCCAACAACGAGGACAAGAGTGAGGCCGAAGG
TAACGATGATGACGACGATGATGATGATGAGCACGGTGATGGCGATGACG
ATGATGACAAGGACCTAAATGAGTCCGATCCCAAGAGCGCCAAGGCCGAT
GACGCCTCCGATGACGAGGATGTCAAGGTGAAGGGCGACGGTGAGGACGG
CGATGGTGACAAATCGGACGAAAAGGCCAAGTCATCGGTCGAGAAGTCAG
GTAAGAAGAAGGACAAAGACGACGCGAAGGACTCCAAGTCCAAGAAGTCA
TCATCCACCAAGAAAGAGCGCACGTCTCGCAAGGACAAAGACAAGGAATC
ATCGGGCGATGATCGTAGCAAGGAGCGACGTAGCTCCCGTCATCGGGATG
AGGACCACAACAACCGCAAACGCAGCTTCATCAAACTCATTTGCGTCCAT
TGCCGCATCAAGTGTGTTACATTTAAGGAGTATAACTACCATCTGAACTC
GCGCTCCCACAAGAACTCCATGCGTCAGGTGGCCCTCAACCAGCGAGCTG
ACCTGCAGCGTATGCGTGCCCGCCAGCGCACCACACAGCGCGAGATCGAG
GAGAATAGCAAGGAGGAGCACGAGTCGCGCTACTGTCGTCTGTGCCGCTT
GGCCTACCGCCAGCCCAAGAATCTTCATCAGGCCTCCGAACACCACAAGA
CCATTAAGAAGTTCTTAATGCCCTATTGCGGCTCTTGCCATCTGGCCTTC
AAGAATGCCATGCTCTACGAGAACCACCGCTGCTCCCTGGATCACATTAG
GAACAAGGCCCGCAACGATGAATCCGGATCGGATGATAGCGTGGATGAGC
GCGAGATAGATTTGAATAAATTCCACACTGTAGACTCGGTGGGCGAGATC
GATGTGGACATGATCGACGCCGATGTAGATGCCATGGTCACCGAGGCGGA
GGCCGCTCTGAAAAGCGAGGATGAGGAGACTCGCAAACGCGCTCTGATTG
GACCGGACTATATAAAGGTCATAGAGGCATTCTACTGCGAGCTGTGCAAT
CACTATTCCGCCAAGGCTGATGATGTCTCGTTAGAGGACTACACCAAAAA
GCATTGCATGCAGCACTCCCATGTGAAGGCTTTCCTGCGAAACAAGGAGG
AGACCGAGAAGAAGAACAAGACGGAGGAGGGCGATGAGGACGATCACGAT
GATGACAAAAAGGCCGGTGATGATGACGCCGATGGCGATGAGGACATCGA
TGGCAAGTTAAACGAGGATGACGACGAGTACGATGATGATGGTGATGCAG
AAGTAGAAGAGGGTGATGCGACCAATGATAAAAAGATGTGGGAGGAGGTG
GACAAGGATCTGGGTGACCTCCTGGCAGAAGTAGAGACAAGAGGTCATAA
AGAAGATGAGGAGGATGAAGAGGACGAGTCTGTGCTTAACATTGACATTG
AAAGCGAGAAAAACAAGGCGAAAGACGGCAAAGAGGAAGCGAACGGCGAT
ACCGATGAGGGAGCTGCGAAAGAAAACGCGCCGGTGGCCAAGTCGCCGGA
GAAAAAGCATGCTGCCTCTGCTCCAACCACACCAACGGCCAAGACCACCG
CTGCTGCCAGCCAGCCGGCAAAGATGGCAACGCCCAAACCGACTGCAAAA
GCAACCAAACCTGGTCCGGCTTCCACGAAGCGCAATGTCTTGGTCAGCGT
GAAGCGCACTTCGGCGGCCGCCATTAAAGCTGCCACTAAGTCCGCCAGCA
ATGCGGCAGCCGCCGACTCCAAGGCAAGCTTTCTAGACCAT

BO17917.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8108-RA 2760 CG8108-PA 1..2757 17..2773 13785 100 Plus
CG8108-RB 2760 CG8108-PB 1..2757 17..2773 13785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8108-RA 3160 CG8108-RA 206..2962 17..2773 13785 100 Plus
CG8108-RB 3138 CG8108-RB 184..2940 17..2773 13785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9868252..9868936 794..1478 3425 100 Plus
3L 28110227 3L 9869445..9870098 1801..2454 3270 100 Plus
3L 28110227 3L 9867305..9867744 356..795 2170 99.5 Plus
3L 28110227 3L 9868997..9869322 1476..1801 1630 100 Plus
3L 28110227 3L 9870156..9870476 2453..2773 1605 100 Plus
3L 28110227 3L 9865099..9865399 17..317 1505 100 Plus
3L 28110227 3L 9866310..9866362 313..365 250 98.1 Plus
Blast to na_te.dros performed 2014-11-26 22:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2884 93..236 156 59.7 Plus
invader2 5124 invader2 INVADER2 5124bp 634..793 753..906 138 57.1 Plus

BO17917.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:55 Download gff for BO17917.complete
Subject Subject Range Query Range Percent Splice Strand
CG8108-RA 1..2760 17..2776 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:13 Download gff for BO17917.complete
Subject Subject Range Query Range Percent Splice Strand
CG8108-RA 239..3000 17..2779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:54 Download gff for BO17917.complete
Subject Subject Range Query Range Percent Splice Strand
CG8108-RB 184..2940 17..2775 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:55 Download gff for BO17917.complete
Subject Subject Range Query Range Percent Splice Strand
CG8108-RA 239..3000 17..2779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:37 Download gff for BO17917.complete
Subject Subject Range Query Range Percent Splice Strand
CG8108-RB 184..2940 17..2775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:37 Download gff for BO17917.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9868999..9869322 1478..1801 100 -> Plus
3L 9870158..9870476 2455..2775 99   Plus
3L 9865099..9865398 17..316 100 -> Plus
3L 9866314..9866361 317..364 100 -> Plus
3L 9867314..9867744 365..795 100 -> Plus
3L 9868254..9868935 796..1477 100 -> Plus
3L 9869446..9870098 1802..2454 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:54 Download gff for BO17917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9862099..9862422 1478..1801 100 -> Plus
arm_3L 9858199..9858498 17..316 100 -> Plus
arm_3L 9859414..9859461 317..364 100 -> Plus
arm_3L 9860414..9860844 365..795 100 -> Plus
arm_3L 9861354..9862035 796..1477 100 -> Plus
arm_3L 9862546..9863198 1802..2454 100 -> Plus
arm_3L 9863258..9863576 2455..2775 99   Plus

BO17917.pep Sequence

Translation from 16 to 2791

> BO17917.pep
MRGRGGFIPRGGGTTRGGYYNNRNSSNYVNTRTQGNYRPNNGRYENNYHN
NNNRYNNHNNSGGGAGGNSHYDNRSRDKFTHHNSSSGRYESSSSSHKRSY
DSSRDRSDDRKRPRQDDYRRTSSSNDRSDRPSSSSQNIGSSSSNYHQRSS
TGGGGNNGGSSSSYRPRDDSTSGSRHQRDGSMGPPKRMMRSVAGTNYISR
PRGTMSMRGGMMRTGMRVGGMRVVRTRVNESNDLRTMRRQLLYAQQKDRA
RLLKIQQLKSSLRRQRQGGNSSDDSSGKEDKDGEDAEKSKKKKGKDKDAD
GGDESDDDDDDEEDDDEKDEKSKKTSPGKKRNKSANNEDKSEAEGNDDDD
DDDDEHGDGDDDDDKDLNESDPKSAKADDASDDEDVKVKGDGEDGDGDKS
DEKAKSSVEKSGKKKDKDDAKDSKSKKSSSTKKERTSRKDKDKESSGDDR
SKERRSSRHRDEDHNNRKRSFIKLICVHCRIKCVTFKEYNYHLNSRSHKN
SMRQVALNQRADLQRMRARQRTTQREIEENSKEEHESRYCRLCRLAYRQP
KNLHQASEHHKTIKKFLMPYCGSCHLAFKNAMLYENHRCSLDHIRNKARN
DESGSDDSVDEREIDLNKFHTVDSVGEIDVDMIDADVDAMVTEAEAALKS
EDEETRKRALIGPDYIKVIEAFYCELCNHYSAKADDVSLEDYTKKHCMQH
SHVKAFLRNKEETEKKNKTEEGDEDDHDDDKKAGDDDADGDEDIDGKLNE
DDDEYDDDGDAEVEEGDATNDKKMWEEVDKDLGDLLAEVETRGHKEDEED
EEDESVLNIDIESEKNKAKDGKEEANGDTDEGAAKENAPVAKSPEKKHAA
SAPTTPTAKTTAAASQPAKMATPKPTAKATKPGPASTKRNVLVSVKRTSA
AAIKAATKSASNAAAADSKASFLDH

BO17917.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8108-PA 919 CG8108-PA 1..919 1..919 4839 100 Plus
CG8108-PB 919 CG8108-PB 1..919 1..919 4839 100 Plus
l(2)01289-PG 1191 CG9432-PG 680..948 223..466 315 29.7 Plus
l(2)01289-PM 1193 CG9432-PM 680..948 223..466 315 29.7 Plus
l(2)01289-PG 1191 CG9432-PG 804..989 270..460 259 31.3 Plus
l(2)01289-PM 1193 CG9432-PM 804..989 270..460 259 31.3 Plus
SRm160-PA 954 CG11274-PA 363..885 2..476 252 22.8 Plus
l(2)01289-PG 1191 CG9432-PG 828..996 270..442 245 31.4 Plus
l(2)01289-PM 1193 CG9432-PM 828..996 270..442 245 31.4 Plus
l(2)01289-PG 1191 CG9432-PG 890..1070 270..447 179 30.8 Plus
l(2)01289-PG 1191 CG9432-PG 739..856 709..831 177 32.5 Plus
l(2)01289-PG 1191 CG9432-PG 785..901 709..837 177 31 Plus
l(2)01289-PM 1193 CG9432-PM 739..856 709..831 177 32.5 Plus
l(2)01289-PM 1193 CG9432-PM 785..901 709..837 177 31 Plus
l(2)01289-PG 1191 CG9432-PG 817..933 711..832 168 35.5 Plus
l(2)01289-PG 1191 CG9432-PG 842..990 708..854 168 24.2 Plus
l(2)01289-PM 1193 CG9432-PM 817..933 711..832 168 35.5 Plus
l(2)01289-PM 1193 CG9432-PM 842..990 708..854 168 24.2 Plus
l(2)01289-PG 1191 CG9432-PG 719..840 707..837 161 29.9 Plus
l(2)01289-PM 1193 CG9432-PM 719..840 707..837 161 29.9 Plus