Clone Sequence Records
BO17918.3prime Sequence
747 bp (600 high quality bases) assembled on 2006-10-13
> BO17918.3prime
ATGGTCTAGAAAGCTTGCGGCCTGTTGCCTAGCCTCGTTGGCCTCGTAGG
CCTCCACCTCGGCGATGTTGGCCAGGTCGTACTCGATGACGCCCTTGCCC
ATGAACTCGGCGTACTTGGCTGACTCCGGCAGCGGATCAGCCGATCTCTT
CGAGACGCCTGAGACGAACTTCTCCATCATGTAGACCTTCATATCGAAGC
ACTCGTTGGCAATCCGCTCCGAGATGAGCGAGACATCGGTGATGCGGGGC
ATGACCACACGCATCTGGCGCCGCACGCGCTCCGTATCTATGTTGTAGTA
GCCAGTGCTCATCTTCTTTATGAGATCCACAAAGCTGGTCGGGGGCAGGG
TCGTGTCCCGATCCAAGGGCATGATGAAGCACCGTCCGGTGGTAGTGTCG
ATAATGGCCGACTGGTTCTCCTTGAAGTCGTGCATGAAGCGACCACGACG
TCCATCCTTGAAGTCGGGCACGTCCACGCGTGCGTAGCCCTCGTCATCGC
TGTCACCGTCCAGTTCGATGTCCTCGCGGAAGTGGCTCTCGTCCAGCGAT
CCACTGTTGGGCATCGGTTGCGCGAGCTCGGGTAGCAAGGAGCGCCAGTT
CAGGGCGAACGGTTCCACGGTGCGCGGATATACCCGCGCCATCTCCATCG
AGTCCTCCGGATAGGGGATCTCGCACAGGGCGTGTTAGCGCATGCTGCTA
TGCGACGGAACGTACACTCGGTACAGGGTCCATCCGCCCCGGACCCC
BO17918.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-PA | 960 | CG3662-RA | 237..957 | 739..19 | 3555 | 99.7 | Minus |
CG3662-PB | 810 | CG3662-RB | 87..807 | 739..19 | 3555 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-RD | 1731 | CG3662-RD | 495..1220 | 744..19 | 3585 | 99.6 | Minus |
CG3662-RC | 1570 | CG3662-RC | 362..1087 | 744..19 | 3585 | 99.6 | Minus |
CG3662-RB | 2849 | CG3662-RB | 1560..2285 | 744..19 | 3585 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 822981..823569 | 744..156 | 2900 | 99.5 | Minus |
2L | 23513712 | 2L | 823636..823773 | 156..19 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:12:00 has no hits.
BO17918.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:22 Download gff for
BO17918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-PB | 78..810 | 16..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:02 Download gff for
BO17918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RB | 1556..2297 | 6..747 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:28 Download gff for
BO17918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RB | 1556..2297 | 6..747 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:28 Download gff for
BO17918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 822977..823569 | 156..747 | 99 | -> | Minus |
2L | 823637..823785 | 6..155 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:02 Download gff for
BO17918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 823637..823785 | 6..155 | 96 | | Minus |
arm_2L | 822977..823569 | 156..747 | 99 | -> | Minus |
BO17918.5prime Sequence
676 bp (654 high quality bases) assembled on 2006-10-13
> BO17918.5prime
GAAGTTATCAGTCGACATGACAATTCTGGGAAAACTGCGGGGACAGCCCA
CGGACCAGGAGAAGGTGCCCCTGCCCATGAACCTCAACGACGAGGCGCTC
ATGCACCATGGCTCCCTAATCGCACCCAAGGTTGCTTACAGCGATAATGA
AGCCGACGCGGAATCCATGGTCTTCAACCGGCCGCAGCACCATTGCATCA
AATCCTTTCTGCTGTTCCTGATCGCCGTAGTCGTGATGCTCCTGGGTGTC
CTGGGCGGATGGACCCTGTACCGAGTGTACGCTCCGTCGCATAGCAGCAT
GCGCTACCACGCCCTGTGCGAGATCCCCTATCCGGAGGACTCGATGGAGA
TGGCGCGGGTATATCCGCGCACCGTGGAACCGTTCGCCCTGAACTGGCGC
TCCTTGCTACCCGAGCTCGCGCAACCGATGCCCAACAGTGGATCGCTGGA
CGAGAGCCACTTCCGCGAGGACATCGAACTGGACGGTGACAGCGATGACG
AGGGCTACGCACGCGTGGACGTGCCCGACTTCAAGGATGGACGTCGTGGT
CGCTTCATGCACGACTTCAAGGAGAACCAGTCGGCCATTATCGACACTAC
CACCGGACGGTGCTTCATCATGCCCTTGGATCGGGACACGACCCTGCCCC
CGACCAGCTTTGTGGATCTCATAAAG
BO17918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-PA | 960 | CG3662-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
CG3662-PB | 810 | CG3662-RB | 1..510 | 167..676 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-RD | 1731 | CG3662-RD | 263..923 | 16..676 | 3305 | 100 | Plus |
CG3662-RC | 1570 | CG3662-RC | 130..790 | 16..676 | 3305 | 100 | Plus |
CG3662-RA | 1651 | CG3662-RA | 130..790 | 16..676 | 3305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 822858..823409 | 125..676 | 2760 | 100 | Plus |
2L | 23513712 | 2L | 821551..821659 | 16..124 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:22:38 has no hits.
BO17918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:23 Download gff for
BO17918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-PA | 1..660 | 17..676 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:55:31 Download gff for
BO17918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 126..790 | 9..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:02 Download gff for
BO17918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 126..790 | 9..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:02 Download gff for
BO17918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 821547..821659 | 9..124 | 97 | -> | Plus |
2L | 822858..823409 | 125..676 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:55:31 Download gff for
BO17918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 821547..821659 | 9..124 | 97 | -> | Plus |
arm_2L | 822858..823409 | 125..676 | 100 | | Plus |
BO17918.complete Sequence
991 bp assembled on 2006-10-11
GenBank Submission: FJ634255
> BO17918.complete
GAAGTTATCAGTCGACATGACAATTCTGGGAAAACTGCGGGGACAGCCCA
CGGACCAGGAGAAGGTGCCCCTGCCCATGAACCTCAACGACGAGGCGCTC
ATGCACCATGGCTCCCTAATCGCACCCAAGGTTGCTTACAGCGATAATGA
AGCCGACGCGGAATCCATGGTCTTCAACCGGCCGCAGCACCATTGCATCA
AATCCTTTCTGCTGTTCCTGATCGCCGTAGTCGTGATGCTCCTGGGTGTC
CTGGGCGGATGGACCCTGTACCGAGTGTACGCTCCGTCGCATAGCAGCAT
GCGCTACCACGCCCTGTGCGAGATCCCCTATCCGGAGGACTCGATGGAGA
TGGCGCGGGTATATCCGCGCACCGTGGAACCGTTCGCCCTGAACTGGCGC
TCCTTGCTACCCGAGCTCGCGCAACCGATGCCCAACAGTGGATCGCTGGA
CGAGAGCCACTTCCGCGAGGACATCGAACTGGACGGTGACAGCGATGACG
AGGGCTACGCACGCGTGGACGTGCCCGACTTCAAGGATGGACGTCGTGGT
CGCTTCATGCACGACTTCAAGGAGAACCAGTCGGCCATTATCGACACTAC
CACCGGACGGTGCTTCATCATGCCCTTGGATCGGGACACGACCCTGCCCC
CGACCAGCTTTGTGGATCTCATAAAGAAGATGAGCACTGGCTACTACAAC
ATAGATACGGAGCGCGTGCGGCGCCAGATGCGTGTGGTCATGCCCCGCAT
CACCGATGTCTCGCTCATCTCGGAGCGGATTGCCAACGAGTGCTTCGATA
TGAAGGTCTACATGATGGAGAAGTTCGTCTCAGGCGTCTCGAAGAGATCG
GCTGATCCGCTGCCGGAGTCAGCCAAGTACGCCGAGTTCATGGGCAAGGG
CGTCATCGAGTACGACCTGGCCAACATCGCCGAGGTGGAGGCCTACGAGG
CCAACGAGGCTAGGCAACAGGCCGCAAGCTTTCTAGACCAT
BO17918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-RD | 960 | CG3662-PD | 1..957 | 17..973 | 4785 | 100 | Plus |
CG3662-RC | 960 | CG3662-PC | 1..957 | 17..973 | 4785 | 100 | Plus |
CG3662-RA | 960 | CG3662-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-RD | 1731 | CG3662-RD | 263..1220 | 16..973 | 4790 | 100 | Plus |
CG3662-RC | 1570 | CG3662-RC | 130..1087 | 16..973 | 4790 | 100 | Plus |
CG3662-RA | 1651 | CG3662-RA | 130..1087 | 16..973 | 4790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 822858..823569 | 125..836 | 3560 | 100 | Plus |
2L | 23513712 | 2L | 823636..823773 | 836..973 | 690 | 100 | Plus |
2L | 23513712 | 2L | 821551..821659 | 16..124 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:58:52 has no hits.
BO17918.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:18 Download gff for
BO17918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 1..960 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:46 Download gff for
BO17918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 130..1103 | 9..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:55:16 Download gff for
BO17918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 131..1087 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:18 Download gff for
BO17918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 130..1103 | 9..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:46 Download gff for
BO17918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3662-RA | 131..1087 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:46 Download gff for
BO17918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 821552..821659 | 17..124 | 100 | -> | Plus |
2L | 822858..823569 | 125..836 | 100 | -> | Plus |
2L | 823637..823773 | 837..975 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:55:16 Download gff for
BO17918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 821552..821659 | 17..124 | 100 | -> | Plus |
arm_2L | 822858..823569 | 125..836 | 100 | -> | Plus |
arm_2L | 823637..823773 | 837..975 | 98 | | Plus |
BO17918.pep Sequence
Translation from 16 to 991
> BO17918.pep
MTILGKLRGQPTDQEKVPLPMNLNDEALMHHGSLIAPKVAYSDNEADAES
MVFNRPQHHCIKSFLLFLIAVVVMLLGVLGGWTLYRVYAPSHSSMRYHAL
CEIPYPEDSMEMARVYPRTVEPFALNWRSLLPELAQPMPNSGSLDESHFR
EDIELDGDSDDEGYARVDVPDFKDGRRGRFMHDFKENQSAIIDTTTGRCF
IMPLDRDTTLPPTSFVDLIKKMSTGYYNIDTERVRRQMRVVMPRITDVSL
ISERIANECFDMKVYMMEKFVSGVSKRSADPLPESAKYAEFMGKGVIEYD
LANIAEVEAYEANEARQQAASFLDH
BO17918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3662-PD | 319 | CG3662-PD | 1..319 | 1..319 | 1668 | 100 | Plus |
CG3662-PC | 319 | CG3662-PC | 1..319 | 1..319 | 1668 | 100 | Plus |
CG3662-PA | 319 | CG3662-PA | 1..319 | 1..319 | 1668 | 100 | Plus |
CG3662-PB | 269 | CG3662-PB | 1..269 | 51..319 | 1410 | 100 | Plus |