Clone BO17918 Report

Search the DGRC for BO17918

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG3662-RA
Protein status:BO17918.pep: validated full length
Sequenced Size:991

Clone Sequence Records

BO17918.3prime Sequence

747 bp (600 high quality bases) assembled on 2006-10-13

> BO17918.3prime
ATGGTCTAGAAAGCTTGCGGCCTGTTGCCTAGCCTCGTTGGCCTCGTAGG
CCTCCACCTCGGCGATGTTGGCCAGGTCGTACTCGATGACGCCCTTGCCC
ATGAACTCGGCGTACTTGGCTGACTCCGGCAGCGGATCAGCCGATCTCTT
CGAGACGCCTGAGACGAACTTCTCCATCATGTAGACCTTCATATCGAAGC
ACTCGTTGGCAATCCGCTCCGAGATGAGCGAGACATCGGTGATGCGGGGC
ATGACCACACGCATCTGGCGCCGCACGCGCTCCGTATCTATGTTGTAGTA
GCCAGTGCTCATCTTCTTTATGAGATCCACAAAGCTGGTCGGGGGCAGGG
TCGTGTCCCGATCCAAGGGCATGATGAAGCACCGTCCGGTGGTAGTGTCG
ATAATGGCCGACTGGTTCTCCTTGAAGTCGTGCATGAAGCGACCACGACG
TCCATCCTTGAAGTCGGGCACGTCCACGCGTGCGTAGCCCTCGTCATCGC
TGTCACCGTCCAGTTCGATGTCCTCGCGGAAGTGGCTCTCGTCCAGCGAT
CCACTGTTGGGCATCGGTTGCGCGAGCTCGGGTAGCAAGGAGCGCCAGTT
CAGGGCGAACGGTTCCACGGTGCGCGGATATACCCGCGCCATCTCCATCG
AGTCCTCCGGATAGGGGATCTCGCACAGGGCGTGTTAGCGCATGCTGCTA
TGCGACGGAACGTACACTCGGTACAGGGTCCATCCGCCCCGGACCCC

BO17918.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-PA 960 CG3662-RA 237..957 739..19 3555 99.7 Minus
CG3662-PB 810 CG3662-RB 87..807 739..19 3555 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-RD 1731 CG3662-RD 495..1220 744..19 3585 99.6 Minus
CG3662-RC 1570 CG3662-RC 362..1087 744..19 3585 99.6 Minus
CG3662-RB 2849 CG3662-RB 1560..2285 744..19 3585 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 822981..823569 744..156 2900 99.5 Minus
2L 23513712 2L 823636..823773 156..19 690 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:12:00 has no hits.

BO17918.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:22 Download gff for BO17918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-PB 78..810 16..747 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:02 Download gff for BO17918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-RB 1556..2297 6..747 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:28 Download gff for BO17918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-RB 1556..2297 6..747 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:28 Download gff for BO17918.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 822977..823569 156..747 99 -> Minus
2L 823637..823785 6..155 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:02 Download gff for BO17918.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 823637..823785 6..155 96   Minus
arm_2L 822977..823569 156..747 99 -> Minus

BO17918.5prime Sequence

676 bp (654 high quality bases) assembled on 2006-10-13

> BO17918.5prime
GAAGTTATCAGTCGACATGACAATTCTGGGAAAACTGCGGGGACAGCCCA
CGGACCAGGAGAAGGTGCCCCTGCCCATGAACCTCAACGACGAGGCGCTC
ATGCACCATGGCTCCCTAATCGCACCCAAGGTTGCTTACAGCGATAATGA
AGCCGACGCGGAATCCATGGTCTTCAACCGGCCGCAGCACCATTGCATCA
AATCCTTTCTGCTGTTCCTGATCGCCGTAGTCGTGATGCTCCTGGGTGTC
CTGGGCGGATGGACCCTGTACCGAGTGTACGCTCCGTCGCATAGCAGCAT
GCGCTACCACGCCCTGTGCGAGATCCCCTATCCGGAGGACTCGATGGAGA
TGGCGCGGGTATATCCGCGCACCGTGGAACCGTTCGCCCTGAACTGGCGC
TCCTTGCTACCCGAGCTCGCGCAACCGATGCCCAACAGTGGATCGCTGGA
CGAGAGCCACTTCCGCGAGGACATCGAACTGGACGGTGACAGCGATGACG
AGGGCTACGCACGCGTGGACGTGCCCGACTTCAAGGATGGACGTCGTGGT
CGCTTCATGCACGACTTCAAGGAGAACCAGTCGGCCATTATCGACACTAC
CACCGGACGGTGCTTCATCATGCCCTTGGATCGGGACACGACCCTGCCCC
CGACCAGCTTTGTGGATCTCATAAAG

BO17918.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-PA 960 CG3662-RA 1..660 17..676 3300 100 Plus
CG3662-PB 810 CG3662-RB 1..510 167..676 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-RD 1731 CG3662-RD 263..923 16..676 3305 100 Plus
CG3662-RC 1570 CG3662-RC 130..790 16..676 3305 100 Plus
CG3662-RA 1651 CG3662-RA 130..790 16..676 3305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 822858..823409 125..676 2760 100 Plus
2L 23513712 2L 821551..821659 16..124 545 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:22:38 has no hits.

BO17918.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:23 Download gff for BO17918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-PA 1..660 17..676 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 03:55:31 Download gff for BO17918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 126..790 9..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:02 Download gff for BO17918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 126..790 9..676 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:02 Download gff for BO17918.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 821547..821659 9..124 97 -> Plus
2L 822858..823409 125..676 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 03:55:31 Download gff for BO17918.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 821547..821659 9..124 97 -> Plus
arm_2L 822858..823409 125..676 100   Plus

BO17918.complete Sequence

991 bp assembled on 2006-10-11

GenBank Submission: FJ634255

> BO17918.complete
GAAGTTATCAGTCGACATGACAATTCTGGGAAAACTGCGGGGACAGCCCA
CGGACCAGGAGAAGGTGCCCCTGCCCATGAACCTCAACGACGAGGCGCTC
ATGCACCATGGCTCCCTAATCGCACCCAAGGTTGCTTACAGCGATAATGA
AGCCGACGCGGAATCCATGGTCTTCAACCGGCCGCAGCACCATTGCATCA
AATCCTTTCTGCTGTTCCTGATCGCCGTAGTCGTGATGCTCCTGGGTGTC
CTGGGCGGATGGACCCTGTACCGAGTGTACGCTCCGTCGCATAGCAGCAT
GCGCTACCACGCCCTGTGCGAGATCCCCTATCCGGAGGACTCGATGGAGA
TGGCGCGGGTATATCCGCGCACCGTGGAACCGTTCGCCCTGAACTGGCGC
TCCTTGCTACCCGAGCTCGCGCAACCGATGCCCAACAGTGGATCGCTGGA
CGAGAGCCACTTCCGCGAGGACATCGAACTGGACGGTGACAGCGATGACG
AGGGCTACGCACGCGTGGACGTGCCCGACTTCAAGGATGGACGTCGTGGT
CGCTTCATGCACGACTTCAAGGAGAACCAGTCGGCCATTATCGACACTAC
CACCGGACGGTGCTTCATCATGCCCTTGGATCGGGACACGACCCTGCCCC
CGACCAGCTTTGTGGATCTCATAAAGAAGATGAGCACTGGCTACTACAAC
ATAGATACGGAGCGCGTGCGGCGCCAGATGCGTGTGGTCATGCCCCGCAT
CACCGATGTCTCGCTCATCTCGGAGCGGATTGCCAACGAGTGCTTCGATA
TGAAGGTCTACATGATGGAGAAGTTCGTCTCAGGCGTCTCGAAGAGATCG
GCTGATCCGCTGCCGGAGTCAGCCAAGTACGCCGAGTTCATGGGCAAGGG
CGTCATCGAGTACGACCTGGCCAACATCGCCGAGGTGGAGGCCTACGAGG
CCAACGAGGCTAGGCAACAGGCCGCAAGCTTTCTAGACCAT

BO17918.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-RD 960 CG3662-PD 1..957 17..973 4785 100 Plus
CG3662-RC 960 CG3662-PC 1..957 17..973 4785 100 Plus
CG3662-RA 960 CG3662-PA 1..957 17..973 4785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-RD 1731 CG3662-RD 263..1220 16..973 4790 100 Plus
CG3662-RC 1570 CG3662-RC 130..1087 16..973 4790 100 Plus
CG3662-RA 1651 CG3662-RA 130..1087 16..973 4790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 822858..823569 125..836 3560 100 Plus
2L 23513712 2L 823636..823773 836..973 690 100 Plus
2L 23513712 2L 821551..821659 16..124 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:58:52 has no hits.

BO17918.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:18 Download gff for BO17918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 1..960 17..976 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:46 Download gff for BO17918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 130..1103 9..986 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:55:16 Download gff for BO17918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 131..1087 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:18 Download gff for BO17918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 130..1103 9..986 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:46 Download gff for BO17918.complete
Subject Subject Range Query Range Percent Splice Strand
CG3662-RA 131..1087 17..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:46 Download gff for BO17918.complete
Subject Subject Range Query Range Percent Splice Strand
2L 821552..821659 17..124 100 -> Plus
2L 822858..823569 125..836 100 -> Plus
2L 823637..823773 837..975 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:55:16 Download gff for BO17918.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 821552..821659 17..124 100 -> Plus
arm_2L 822858..823569 125..836 100 -> Plus
arm_2L 823637..823773 837..975 98   Plus

BO17918.pep Sequence

Translation from 16 to 991

> BO17918.pep
MTILGKLRGQPTDQEKVPLPMNLNDEALMHHGSLIAPKVAYSDNEADAES
MVFNRPQHHCIKSFLLFLIAVVVMLLGVLGGWTLYRVYAPSHSSMRYHAL
CEIPYPEDSMEMARVYPRTVEPFALNWRSLLPELAQPMPNSGSLDESHFR
EDIELDGDSDDEGYARVDVPDFKDGRRGRFMHDFKENQSAIIDTTTGRCF
IMPLDRDTTLPPTSFVDLIKKMSTGYYNIDTERVRRQMRVVMPRITDVSL
ISERIANECFDMKVYMMEKFVSGVSKRSADPLPESAKYAEFMGKGVIEYD
LANIAEVEAYEANEARQQAASFLDH

BO17918.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3662-PD 319 CG3662-PD 1..319 1..319 1668 100 Plus
CG3662-PC 319 CG3662-PC 1..319 1..319 1668 100 Plus
CG3662-PA 319 CG3662-PA 1..319 1..319 1668 100 Plus
CG3662-PB 269 CG3662-PB 1..269 51..319 1410 100 Plus