Clone BO17924 Report

Search the DGRC for BO17924

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG12880-RA
Protein status:BO17924.pep: validated full length
Sequenced Size:1024

Clone Sequence Records

BO17924.3prime Sequence

773 bp (767 high quality bases) assembled on 2006-10-13

> BO17924.3prime
ATGGTCTAGAAAGCTTGCCGAGATGATGTTCTGGTAGAACTGCGGCTTCT
TCTGGTGCTCCTTGATGACATAGAATCCCTTGGGCTTGCCATTGCCCGCG
AAGTACTTGTGGAAGCTCTGCTTGCTGACCGCCTGGGCGGGTGCATAATA
TGTGGGTGACTTGGGCTTCAGGGATTTGCGATACTTGGCCTTCCCGCCGC
CGGCACTGAAGCCCTTCTCGGCGGTCTCGTTCTCCCAGGGCTGGCGCCAC
GTGGGCACACCCTGGATGTCCAGCAGTCTATTGCGATCCGCCGCCGAGAC
GTGGGCGAAGTGGGGCTTCTTGGCCAGCGCCTCCTTCAGGACGGGCAGGT
TCCAGTGGTAGATGCGGCCCGGCCGGCCATTCGAGCTGAAGGGAAACGAG
ACCTTTTTCCCGTTAGCTTTCAACGCCGACGCTTCGGCAACTGGTGATGT
TGCAACTGCTGCTGATGCGGCTGCTGCGACTGGTGTGCTGGATGCCATCG
TGCTGGGTGCGTTACCTTTGTGGCCAGACTTGTCCTGCTGCTCTGCGATG
GAATTCTTCGCACCGGGTCCAGCATAGTAGTGCATATTTGGCGGCAATTT
GATGATGAACATGTGTGAATCATCGCGCGAGGAGTGGCGTCGTGACTCAA
CCGCCAGTCGCTTCCTGTTGTGGCTGTTGGGCGCCTTCACCTTCATGAAG
CCCATCTGGCTGAGCAGCTTCTTGTTGAGTCCATGGGCGCTTCTGGCCAG
TTGCTTGGGCTGCTTGATAGCCG

BO17924.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-PA 993 CG12880-RA 236..990 773..19 3775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-RA 1894 CG12880-RA 460..1214 773..19 3775 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27691725..27692110 404..19 1930 100 Minus
3R 32079331 3R 27690550..27690861 712..401 1560 100 Minus
3R 32079331 3R 27689941..27690004 773..710 320 100 Minus
Blast to na_te.dros performed 2015-01-31 10:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1575 483..425 124 67.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2476 546..442 117 60.2 Minus

BO17924.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:27 Download gff for BO17924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-PA 236..993 15..773 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:51 Download gff for BO17924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 460..1217 15..773 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:38 Download gff for BO17924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 460..1217 15..773 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:38 Download gff for BO17924.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27689941..27690004 710..773 100 -> Minus
3R 27690553..27690859 403..709 100 -> Minus
3R 27691727..27692113 15..402 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:51 Download gff for BO17924.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23517449..23517835 15..402 99   Minus
arm_3R 23515663..23515726 710..773 100 -> Minus
arm_3R 23516275..23516581 403..709 100 -> Minus

BO17924.5prime Sequence

791 bp (688 high quality bases) assembled on 2006-10-13

> BO17924.5prime
GAAGTTATCAGTCGACATGCTAAAAGTGTCAGTCGGCAAGCACAAGTTCA
TCAACATGCGTCCAAGCTGGATGGGAACGGCGGCCTGGCTGCTGGGGCTC
TACTGCCTCCTGTGCATCGCCGCGATGGTCGAAGGTGCCAGCAATTCGGT
AGCTCTGGCTGCGCCCACTGCATCCGCTGCCAAGGATGTCGCCCATATGC
ACAGGTCGAAGAGGCTGGACAGGCGATCAGGAGCGGGATCGAGTCCTCTG
ACGGCTATCAAGCAGCCCAAGCAACTGGCCAGAAGCGCCCATGGACTCAA
CAAGAAGCTGCTCAGCCAGATGGGCTTCATGAAGGTGAAGGCGCCCAACA
GCCACAACAGGAAGCGACTGGCGGTTGAGTCACGACGCCACTCCTCGCGC
GATGATTCACACATGTTCATCATCAAATTGCCGCCAAATATGCACTACTA
TGCTGGACCCGGTGCGAAGAATTCCATCGCAGAGCAGCAGGACAAGTCTG
GCCACAAAGGTAACGCACCCAGCACGATGGCATCCAGCACACCAGTCGCA
GCAGCCGCATCAGCAGCAGTTGCAACATCACCAGTTGCCGAAGCGTCGGC
GTTGAAAGCTAACGGGAAAAAGGTCTCGTTTCCCTTCAGCTCGAATGGCC
GGCCGGGCCGCATCTACCACTGGAACCTGCCCGTCCTGAAGGAGGCGCTG
GCCAAGAAGCCCCACTTCGCCCACGTCTCGGCGGCGGATCGCAATAGACT
GCTGGACATCCAGGGTGTGCCCACGTGGCGCCAGCCCTGGG

BO17924.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-PA 993 CG12880-RA 1..775 17..791 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-RA 1894 CG12880-RA 223..999 15..791 3885 100 Plus
CG31055-RB 2018 CG31055-RB 1384..1466 97..15 415 100 Minus
CG31055-RC 2073 CG31055-RC 1439..1521 97..15 415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27690550..27690861 313..624 1560 100 Plus
3R 32079331 3R 27689785..27690004 96..315 1100 100 Plus
3R 32079331 3R 27691725..27691895 621..791 855 100 Plus
3R 32079331 3R 27686184..27686266 15..97 415 100 Plus
Blast to na_te.dros performed 2015-02-11 09:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1575 542..600 124 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2476 479..583 117 60.2 Plus

BO17924.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:29 Download gff for BO17924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-PA 1..775 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:25 Download gff for BO17924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 223..999 15..791 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:30 Download gff for BO17924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 223..999 15..791 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:30 Download gff for BO17924.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27686184..27686265 15..96 100 -> Plus
3R 27689786..27690004 97..315 100 -> Plus
3R 27690553..27690859 316..622 100 -> Plus
3R 27691727..27691895 623..791 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:25 Download gff for BO17924.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23511906..23511987 15..96 100 -> Plus
arm_3R 23515508..23515726 97..315 100 -> Plus
arm_3R 23516275..23516581 316..622 100 -> Plus
arm_3R 23517449..23517617 623..791 100   Plus

BO17924.complete Sequence

1024 bp assembled on 2006-10-11

GenBank Submission: FJ634256

> BO17924.complete
GAAGTTATCAGTCGACATGCTAAAAGTGTCAGTCGGCAAGCACAAGTTCA
TCAACATGCGTCCAAGCTGGATGGGAACGGCGGCCTGGCTGCTGGGGCTC
TACTGCCTCCTGTGCATCGCCGCGATGGTCGAAGGTGCCAGCAATTCGGT
AGCTCTGGCTGCGCCCACTGCATCCGCTGCCAAGGATGTCGCCCATATGC
ACAGGTCGAAGAGGCTGGACAGGCGATCAGGAGCGGGATCGAGTCCTCTG
ACGGCTATCAAGCAGCCCAAGCAACTGGCCAGAAGCGCCCATGGACTCAA
CAAGAAGCTGCTCAGCCAGATGGGCTTCATGAAGGTGAAGGCGCCCAACA
GCCACAACAGGAAGCGACTGGCGGTTGAGTCACGACGCCACTCCTCGCGC
GATGATTCACACATGTTCATCATCAAATTGCCGCCAAATATGCACTACTA
TGCTGGACCCGGTGCGAAGAATTCCATCGCAGAGCAGCAGGACAAGTCTG
GCCACAAAGGTAACGCACCCAGCACGATGGCATCCAGCACACCAGTCGCA
GCAGCCGCATCAGCAGCAGTTGCAACATCACCAGTTGCCGAAGCGTCGGC
GTTGAAAGCTAACGGGAAAAAGGTCTCGTTTCCCTTCAGCTCGAATGGCC
GGCCGGGCCGCATCTACCACTGGAACCTGCCCGTCCTGAAGGAGGCGCTG
GCCAAGAAGCCCCACTTCGCCCACGTCTCGGCGGCGGATCGCAATAGACT
GCTGGACATCCAGGGTGTGCCCACGTGGCGCCAGCCCTGGGAGAACGAGA
CCGCCGAGAAGGGCTTCAGTGCCGGCGGCGGGAAGGCCAAGTATCGCAAA
TCCCTGAAGCCCAAGTCACCCACATATTATGCACCCGCCCAGGCGGTCAG
CAAGCAGAGCTTCCACAAGTACTTCGCGGGCAATGGCAAGCCCAAGGGAT
TCTATGTCATCAAGGAGCACCAGAAGAAGCCGCAGTTCTACCAGAACATC
ATCTCGGCAAGCTTTCTAGACCAT

BO17924.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-RA 993 CG12880-PA 1..990 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-RA 1894 CG12880-RA 223..1214 15..1006 4960 100 Plus
CG31055-RB 2018 CG31055-RB 1384..1466 97..15 415 100 Minus
CG31055-RC 2073 CG31055-RC 1439..1521 97..15 415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27691725..27692110 621..1006 1930 100 Plus
3R 32079331 3R 27690550..27690861 313..624 1560 100 Plus
3R 32079331 3R 27689785..27690004 96..315 1100 100 Plus
3R 32079331 3R 27686184..27686266 15..97 415 100 Plus
Blast to na_te.dros performed 2014-11-27 15:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1575 542..600 124 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2476 479..583 117 60.2 Plus

BO17924.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:21 Download gff for BO17924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 1..993 17..1010 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:51 Download gff for BO17924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 223..1217 15..1010 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:09 Download gff for BO17924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 225..1214 17..1008 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:21 Download gff for BO17924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 223..1217 15..1010 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:01 Download gff for BO17924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12880-RA 225..1214 17..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:01 Download gff for BO17924.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27690553..27690859 316..622 100 -> Plus
3R 27691727..27692110 623..1008 99   Plus
3R 27686186..27686265 17..96 100 -> Plus
3R 27689786..27690004 97..315 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:09 Download gff for BO17924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23511908..23511987 17..96 100 -> Plus
arm_3R 23515508..23515726 97..315 100 -> Plus
arm_3R 23516275..23516581 316..622 100 -> Plus
arm_3R 23517449..23517832 623..1008 99   Plus

BO17924.pep Sequence

Translation from 16 to 1024

> BO17924.pep
MLKVSVGKHKFINMRPSWMGTAAWLLGLYCLLCIAAMVEGASNSVALAAP
TASAAKDVAHMHRSKRLDRRSGAGSSPLTAIKQPKQLARSAHGLNKKLLS
QMGFMKVKAPNSHNRKRLAVESRRHSSRDDSHMFIIKLPPNMHYYAGPGA
KNSIAEQQDKSGHKGNAPSTMASSTPVAAAASAAVATSPVAEASALKANG
KKVSFPFSSNGRPGRIYHWNLPVLKEALAKKPHFAHVSAADRNRLLDIQG
VPTWRQPWENETAEKGFSAGGGKAKYRKSLKPKSPTYYAPAQAVSKQSFH
KYFAGNGKPKGFYVIKEHQKKPQFYQNIISASFLDH

BO17924.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12880-PA 330 CG12880-PA 1..330 1..330 1721 100 Plus