Clone Sequence Records
BO17924.3prime Sequence
773 bp (767 high quality bases) assembled on 2006-10-13
> BO17924.3prime
ATGGTCTAGAAAGCTTGCCGAGATGATGTTCTGGTAGAACTGCGGCTTCT
TCTGGTGCTCCTTGATGACATAGAATCCCTTGGGCTTGCCATTGCCCGCG
AAGTACTTGTGGAAGCTCTGCTTGCTGACCGCCTGGGCGGGTGCATAATA
TGTGGGTGACTTGGGCTTCAGGGATTTGCGATACTTGGCCTTCCCGCCGC
CGGCACTGAAGCCCTTCTCGGCGGTCTCGTTCTCCCAGGGCTGGCGCCAC
GTGGGCACACCCTGGATGTCCAGCAGTCTATTGCGATCCGCCGCCGAGAC
GTGGGCGAAGTGGGGCTTCTTGGCCAGCGCCTCCTTCAGGACGGGCAGGT
TCCAGTGGTAGATGCGGCCCGGCCGGCCATTCGAGCTGAAGGGAAACGAG
ACCTTTTTCCCGTTAGCTTTCAACGCCGACGCTTCGGCAACTGGTGATGT
TGCAACTGCTGCTGATGCGGCTGCTGCGACTGGTGTGCTGGATGCCATCG
TGCTGGGTGCGTTACCTTTGTGGCCAGACTTGTCCTGCTGCTCTGCGATG
GAATTCTTCGCACCGGGTCCAGCATAGTAGTGCATATTTGGCGGCAATTT
GATGATGAACATGTGTGAATCATCGCGCGAGGAGTGGCGTCGTGACTCAA
CCGCCAGTCGCTTCCTGTTGTGGCTGTTGGGCGCCTTCACCTTCATGAAG
CCCATCTGGCTGAGCAGCTTCTTGTTGAGTCCATGGGCGCTTCTGGCCAG
TTGCTTGGGCTGCTTGATAGCCG
BO17924.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-PA | 993 | CG12880-RA | 236..990 | 773..19 | 3775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-RA | 1894 | CG12880-RA | 460..1214 | 773..19 | 3775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27691725..27692110 | 404..19 | 1930 | 100 | Minus |
3R | 32079331 | 3R | 27690550..27690861 | 712..401 | 1560 | 100 | Minus |
3R | 32079331 | 3R | 27689941..27690004 | 773..710 | 320 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 10:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 483..425 | 124 | 67.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2476 | 546..442 | 117 | 60.2 | Minus |
BO17924.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:27 Download gff for
BO17924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-PA | 236..993 | 15..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:51 Download gff for
BO17924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 460..1217 | 15..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:38 Download gff for
BO17924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 460..1217 | 15..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:38 Download gff for
BO17924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27689941..27690004 | 710..773 | 100 | -> | Minus |
3R | 27690553..27690859 | 403..709 | 100 | -> | Minus |
3R | 27691727..27692113 | 15..402 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:51 Download gff for
BO17924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23517449..23517835 | 15..402 | 99 | | Minus |
arm_3R | 23515663..23515726 | 710..773 | 100 | -> | Minus |
arm_3R | 23516275..23516581 | 403..709 | 100 | -> | Minus |
BO17924.5prime Sequence
791 bp (688 high quality bases) assembled on 2006-10-13
> BO17924.5prime
GAAGTTATCAGTCGACATGCTAAAAGTGTCAGTCGGCAAGCACAAGTTCA
TCAACATGCGTCCAAGCTGGATGGGAACGGCGGCCTGGCTGCTGGGGCTC
TACTGCCTCCTGTGCATCGCCGCGATGGTCGAAGGTGCCAGCAATTCGGT
AGCTCTGGCTGCGCCCACTGCATCCGCTGCCAAGGATGTCGCCCATATGC
ACAGGTCGAAGAGGCTGGACAGGCGATCAGGAGCGGGATCGAGTCCTCTG
ACGGCTATCAAGCAGCCCAAGCAACTGGCCAGAAGCGCCCATGGACTCAA
CAAGAAGCTGCTCAGCCAGATGGGCTTCATGAAGGTGAAGGCGCCCAACA
GCCACAACAGGAAGCGACTGGCGGTTGAGTCACGACGCCACTCCTCGCGC
GATGATTCACACATGTTCATCATCAAATTGCCGCCAAATATGCACTACTA
TGCTGGACCCGGTGCGAAGAATTCCATCGCAGAGCAGCAGGACAAGTCTG
GCCACAAAGGTAACGCACCCAGCACGATGGCATCCAGCACACCAGTCGCA
GCAGCCGCATCAGCAGCAGTTGCAACATCACCAGTTGCCGAAGCGTCGGC
GTTGAAAGCTAACGGGAAAAAGGTCTCGTTTCCCTTCAGCTCGAATGGCC
GGCCGGGCCGCATCTACCACTGGAACCTGCCCGTCCTGAAGGAGGCGCTG
GCCAAGAAGCCCCACTTCGCCCACGTCTCGGCGGCGGATCGCAATAGACT
GCTGGACATCCAGGGTGTGCCCACGTGGCGCCAGCCCTGGG
BO17924.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-PA | 993 | CG12880-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-RA | 1894 | CG12880-RA | 223..999 | 15..791 | 3885 | 100 | Plus |
CG31055-RB | 2018 | CG31055-RB | 1384..1466 | 97..15 | 415 | 100 | Minus |
CG31055-RC | 2073 | CG31055-RC | 1439..1521 | 97..15 | 415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27690550..27690861 | 313..624 | 1560 | 100 | Plus |
3R | 32079331 | 3R | 27689785..27690004 | 96..315 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 27691725..27691895 | 621..791 | 855 | 100 | Plus |
3R | 32079331 | 3R | 27686184..27686266 | 15..97 | 415 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 542..600 | 124 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2476 | 479..583 | 117 | 60.2 | Plus |
BO17924.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:29 Download gff for
BO17924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:25 Download gff for
BO17924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 223..999 | 15..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:30 Download gff for
BO17924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 223..999 | 15..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:30 Download gff for
BO17924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27686184..27686265 | 15..96 | 100 | -> | Plus |
3R | 27689786..27690004 | 97..315 | 100 | -> | Plus |
3R | 27690553..27690859 | 316..622 | 100 | -> | Plus |
3R | 27691727..27691895 | 623..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:25 Download gff for
BO17924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23511906..23511987 | 15..96 | 100 | -> | Plus |
arm_3R | 23515508..23515726 | 97..315 | 100 | -> | Plus |
arm_3R | 23516275..23516581 | 316..622 | 100 | -> | Plus |
arm_3R | 23517449..23517617 | 623..791 | 100 | | Plus |
BO17924.complete Sequence
1024 bp assembled on 2006-10-11
GenBank Submission: FJ634256
> BO17924.complete
GAAGTTATCAGTCGACATGCTAAAAGTGTCAGTCGGCAAGCACAAGTTCA
TCAACATGCGTCCAAGCTGGATGGGAACGGCGGCCTGGCTGCTGGGGCTC
TACTGCCTCCTGTGCATCGCCGCGATGGTCGAAGGTGCCAGCAATTCGGT
AGCTCTGGCTGCGCCCACTGCATCCGCTGCCAAGGATGTCGCCCATATGC
ACAGGTCGAAGAGGCTGGACAGGCGATCAGGAGCGGGATCGAGTCCTCTG
ACGGCTATCAAGCAGCCCAAGCAACTGGCCAGAAGCGCCCATGGACTCAA
CAAGAAGCTGCTCAGCCAGATGGGCTTCATGAAGGTGAAGGCGCCCAACA
GCCACAACAGGAAGCGACTGGCGGTTGAGTCACGACGCCACTCCTCGCGC
GATGATTCACACATGTTCATCATCAAATTGCCGCCAAATATGCACTACTA
TGCTGGACCCGGTGCGAAGAATTCCATCGCAGAGCAGCAGGACAAGTCTG
GCCACAAAGGTAACGCACCCAGCACGATGGCATCCAGCACACCAGTCGCA
GCAGCCGCATCAGCAGCAGTTGCAACATCACCAGTTGCCGAAGCGTCGGC
GTTGAAAGCTAACGGGAAAAAGGTCTCGTTTCCCTTCAGCTCGAATGGCC
GGCCGGGCCGCATCTACCACTGGAACCTGCCCGTCCTGAAGGAGGCGCTG
GCCAAGAAGCCCCACTTCGCCCACGTCTCGGCGGCGGATCGCAATAGACT
GCTGGACATCCAGGGTGTGCCCACGTGGCGCCAGCCCTGGGAGAACGAGA
CCGCCGAGAAGGGCTTCAGTGCCGGCGGCGGGAAGGCCAAGTATCGCAAA
TCCCTGAAGCCCAAGTCACCCACATATTATGCACCCGCCCAGGCGGTCAG
CAAGCAGAGCTTCCACAAGTACTTCGCGGGCAATGGCAAGCCCAAGGGAT
TCTATGTCATCAAGGAGCACCAGAAGAAGCCGCAGTTCTACCAGAACATC
ATCTCGGCAAGCTTTCTAGACCAT
BO17924.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-RA | 993 | CG12880-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-RA | 1894 | CG12880-RA | 223..1214 | 15..1006 | 4960 | 100 | Plus |
CG31055-RB | 2018 | CG31055-RB | 1384..1466 | 97..15 | 415 | 100 | Minus |
CG31055-RC | 2073 | CG31055-RC | 1439..1521 | 97..15 | 415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27691725..27692110 | 621..1006 | 1930 | 100 | Plus |
3R | 32079331 | 3R | 27690550..27690861 | 313..624 | 1560 | 100 | Plus |
3R | 32079331 | 3R | 27689785..27690004 | 96..315 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 27686184..27686266 | 15..97 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 542..600 | 124 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2476 | 479..583 | 117 | 60.2 | Plus |
BO17924.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:21 Download gff for
BO17924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 1..993 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:51 Download gff for
BO17924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 223..1217 | 15..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:09 Download gff for
BO17924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 225..1214 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:21 Download gff for
BO17924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 223..1217 | 15..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:01 Download gff for
BO17924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12880-RA | 225..1214 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:01 Download gff for
BO17924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27690553..27690859 | 316..622 | 100 | -> | Plus |
3R | 27691727..27692110 | 623..1008 | 99 | | Plus |
3R | 27686186..27686265 | 17..96 | 100 | -> | Plus |
3R | 27689786..27690004 | 97..315 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:09 Download gff for
BO17924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23511908..23511987 | 17..96 | 100 | -> | Plus |
arm_3R | 23515508..23515726 | 97..315 | 100 | -> | Plus |
arm_3R | 23516275..23516581 | 316..622 | 100 | -> | Plus |
arm_3R | 23517449..23517832 | 623..1008 | 99 | | Plus |
BO17924.pep Sequence
Translation from 16 to 1024
> BO17924.pep
MLKVSVGKHKFINMRPSWMGTAAWLLGLYCLLCIAAMVEGASNSVALAAP
TASAAKDVAHMHRSKRLDRRSGAGSSPLTAIKQPKQLARSAHGLNKKLLS
QMGFMKVKAPNSHNRKRLAVESRRHSSRDDSHMFIIKLPPNMHYYAGPGA
KNSIAEQQDKSGHKGNAPSTMASSTPVAAAASAAVATSPVAEASALKANG
KKVSFPFSSNGRPGRIYHWNLPVLKEALAKKPHFAHVSAADRNRLLDIQG
VPTWRQPWENETAEKGFSAGGGKAKYRKSLKPKSPTYYAPAQAVSKQSFH
KYFAGNGKPKGFYVIKEHQKKPQFYQNIISASFLDH
BO17924.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12880-PA | 330 | CG12880-PA | 1..330 | 1..330 | 1721 | 100 | Plus |