Clone BO17925 Report

Search the DGRC for BO17925

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:25
Vector:pDNR-Dual
Associated Gene/Transcriptsqd-RC
Protein status:BO17925.pep: validated full length
Sequenced Size:958

Clone Sequence Records

BO17925.3prime Sequence

726 bp (638 high quality bases) assembled on 2006-10-13

> BO17925.3prime
ATGGTCTAGAAAGCTTGCGTAGGGCTGATGCCGCTGCTGGCGTCCACCGC
CTCCGCGCTGCTTGCCACCGTTAAAACCGCCACCGCCATAACCGTAGTCA
TATCCATTATAGTAGCCGCCGGCATAGTAGTCGCCATAACCACCGGCACC
ATATCCGCCGTAGCCGCCGCCATAGCCGCCGTATGATCCCTGTCCGTCCC
ACTGGTTGTTGTAGCCACCTCGTCCTCCGTAGCCACCGCGTCCGCCGCGC
ATACCACCGCGTGGTCCACCACGCATACCGCCCATCATCTGGTTCTCCGG
CTTGGGCGTCGCACGCTTAACATCGACCTCCTTGCCGGCGATCTTCTGCT
TGGGCGTCTTCAGCAAATCTGTCACCACCTGCTCCGAATCGAAGGTGATG
AAGCAGAATCCTTTGCGCTGCGACTTTTGCTTGTCGAATGGCATCTCCAC
CTCGACGATATTGCCGAACTGTCCAAAGTAGGTCTTAATCTCCTCATCGC
TGATCTCTGTGGTGAGGCCGCCGACAAAGATCTTGCCGTGCCTGGCCTTG
GCCTTCTTGGGATCGACCTTCTTGCTGTTGATTATGTGCTCATCCGCGGC
GCTGACTTTGTCAATGGCCTCGGTGTTTGTAAACACGATGAAGGCGAATC
CTCGGGACCGACCGGTCTGGGGATCTGTCTTGACATTGATGCTCTCGATC
TCGCCATATTTGCCGAAGTGATCGCG

BO17925.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG16901-PC 927 sqd-RC 217..924 726..19 3540 100 Minus
CG16901-PA 966 sqd-RA 217..857 726..86 3205 100 Minus
CG16901-PB 1035 sqd-RB 217..856 726..87 3200 100 Minus
CG16901-PD 537 sqd-RD 1..358 444..87 1790 100 Minus
CG16901-PB 1035 sqd-RB 964..1032 87..19 345 100 Minus
CG16901-PD 537 sqd-RD 466..534 87..19 345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
sqd-RC 2239 CG16901-RC 327..1034 726..19 3540 100 Minus
sqd-RE 2844 CG16901-RE 602..1309 726..19 3540 100 Minus
sqd-RA 5551 CG16901-RA 331..971 726..86 3205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13642829..13643095 460..726 1335 100 Plus
3R 32079331 3R 13642511..13642755 215..459 1225 100 Plus
3R 32079331 3R 13642298..13642428 86..216 655 100 Plus
3R 32079331 3R 13636458..13636526 19..87 345 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:00:05 has no hits.

BO17925.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:29 Download gff for BO17925.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16901-PC 217..927 15..726 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:43 Download gff for BO17925.3prime
Subject Subject Range Query Range Percent Splice Strand
sqd-RE 602..1312 15..726 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:46 Download gff for BO17925.3prime
Subject Subject Range Query Range Percent Splice Strand
sqd-RE 602..1312 15..726 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:46 Download gff for BO17925.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13636454..13636525 15..86 97 <- Plus
3R 13642299..13642427 87..215 100 <- Plus
3R 13642512..13642755 216..459 100 <- Plus
3R 13642829..13643095 460..726 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:43 Download gff for BO17925.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9462176..9462247 15..86 97 <- Plus
arm_3R 9468021..9468149 87..215 100 <- Plus
arm_3R 9468234..9468477 216..459 100 <- Plus
arm_3R 9468551..9468817 460..726 100   Plus

BO17925.5prime Sequence

712 bp (627 high quality bases) assembled on 2006-10-13

> BO17925.5prime
GAAGTTATCAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAA
ACGGCGAGGATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAA
AATGGTGATGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCA
ATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTG
GTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAA
TATGGCGAGATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCG
GTCCCGAGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACA
AAGTCAGCGCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCC
AAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCAC
AGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATA
TCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGA
TTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAA
GACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGA
CGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGC
GGTGGTATGCGC

BO17925.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG16901-PA 966 sqd-RA 1..696 17..712 3480 100 Plus
CG16901-PB 1035 sqd-RB 1..696 17..712 3480 100 Plus
CG16901-PC 927 sqd-RC 1..696 17..712 3480 100 Plus
CG16901-PD 537 sqd-RD 1..198 515..712 990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
sqd-RC 2239 CG16901-RC 111..806 17..712 3480 100 Plus
sqd-RE 2844 CG16901-RE 386..1081 17..712 3480 100 Plus
sqd-RA 5551 CG16901-RA 115..810 17..712 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13642829..13643103 499..225 1375 100 Minus
3R 32079331 3R 13642543..13642755 712..500 1065 100 Minus
3R 32079331 3R 13645752..13645919 184..17 840 100 Minus
3R 32079331 3R 13643169..13643212 224..181 220 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:09:49 has no hits.

BO17925.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:30 Download gff for BO17925.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16901-PC 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:21 Download gff for BO17925.5prime
Subject Subject Range Query Range Percent Splice Strand
sqd-RA 107..810 9..712 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:56 Download gff for BO17925.5prime
Subject Subject Range Query Range Percent Splice Strand
sqd-RA 107..810 9..712 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:56 Download gff for BO17925.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13642543..13642755 500..712 100 <- Minus
3R 13642829..13643103 225..499 100 <- Minus
3R 13643169..13643209 184..224 100 <- Minus
3R 13645753..13645925 9..183 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:21 Download gff for BO17925.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9468265..9468477 500..712 100 <- Minus
arm_3R 9471475..9471647 9..183 97   Minus
arm_3R 9468551..9468825 225..499 100 <- Minus
arm_3R 9468891..9468931 184..224 100 <- Minus

BO17925.complete Sequence

958 bp assembled on 2006-10-11

GenBank Submission: FJ634257

> BO17925.complete
GAAGTTATCAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAA
ACGGCGAGGATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAA
AATGGTGATGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCA
ATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTG
GTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAA
TATGGCGAGATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCG
GTCCCGAGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACA
AAGTCAGCGCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCC
AAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCAC
AGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATA
TCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGA
TTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAA
GACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGA
CGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGC
GGTGGTATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAA
CAACCAGTGGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTACG
GCGGATATGGTGCCGGTGGTTATGGCGACTACTATGCCGGCGGCTACTAT
AATGGATATGACTACGGTTATGGCGGTGGCGGTTTTAACGGTGGCAAGCA
GCGCGGAGGCGGTGGACGCCAGCAGCGGCATCAGCCCTACGCAAGCTTTC
TAGACCAT

BO17925.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
sqd-RC 927 CG16901-PC 1..924 17..940 4620 100 Plus
sqd-RE 927 CG16901-PE 1..924 17..940 4620 100 Plus
sqd-RA 966 CG16901-PA 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
sqd-RC 2239 CG16901-RC 111..1034 17..940 4620 100 Plus
sqd-RE 2844 CG16901-RE 386..1309 17..940 4620 100 Plus
sqd-RA 5551 CG16901-RA 115..971 17..873 4285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13642829..13643103 499..225 1375 100 Minus
3R 32079331 3R 13642511..13642755 744..500 1225 100 Minus
3R 32079331 3R 13645752..13645919 184..17 840 100 Minus
3R 32079331 3R 13642298..13642428 873..743 655 100 Minus
3R 32079331 3R 13636458..13636526 940..872 345 100 Minus
3R 32079331 3R 13643169..13643212 224..181 220 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:40:17 has no hits.

BO17925.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:22 Download gff for BO17925.complete
Subject Subject Range Query Range Percent Splice Strand
sqd-RC 1..927 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:53 Download gff for BO17925.complete
Subject Subject Range Query Range Percent Splice Strand
sqd-RC 378..1312 9..944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:44 Download gff for BO17925.complete
Subject Subject Range Query Range Percent Splice Strand
sqd-RE 386..1309 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:22 Download gff for BO17925.complete
Subject Subject Range Query Range Percent Splice Strand
sqd-RC 378..1312 9..944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:02 Download gff for BO17925.complete
Subject Subject Range Query Range Percent Splice Strand
sqd-RE 386..1309 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:02 Download gff for BO17925.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13642512..13642755 500..743 100 <- Minus
3R 13642829..13643103 225..499 100 <- Minus
3R 13643169..13643209 184..224 100 <- Minus
3R 13636456..13636525 873..942 97 <- Minus
3R 13642299..13642427 744..872 100 <- Minus
3R 13645753..13645919 17..183 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:44 Download gff for BO17925.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9462178..9462247 873..942 97 <- Minus
arm_3R 9468021..9468149 744..872 100 <- Minus
arm_3R 9468234..9468477 500..743 100 <- Minus
arm_3R 9468551..9468825 225..499 100 <- Minus
arm_3R 9468891..9468931 184..224 100 <- Minus
arm_3R 9471475..9471641 17..183 100   Minus

BO17925.pep Sequence

Translation from 16 to 958

> BO17925.pep
MAENKQVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASG
QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFA
FIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDE
EIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQK
IAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDG
QGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYGGGGFNGGKQRGGGG
RQQRHQPYASFLDH

BO17925.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
sqd-PC 308 CG16901-PC 1..308 1..308 1667 100 Plus
sqd-PE 308 CG16901-PE 1..308 1..308 1667 100 Plus
sqd-PB 344 CG16901-PB 1..344 1..308 1620 89.5 Plus
sqd-PA 321 CG16901-PA 1..286 1..286 1539 100 Plus
sqd-PD 178 CG16901-PD 1..178 167..308 763 79.8 Plus