Clone Sequence Records
BO17925.3prime Sequence
726 bp (638 high quality bases) assembled on 2006-10-13
> BO17925.3prime
ATGGTCTAGAAAGCTTGCGTAGGGCTGATGCCGCTGCTGGCGTCCACCGC
CTCCGCGCTGCTTGCCACCGTTAAAACCGCCACCGCCATAACCGTAGTCA
TATCCATTATAGTAGCCGCCGGCATAGTAGTCGCCATAACCACCGGCACC
ATATCCGCCGTAGCCGCCGCCATAGCCGCCGTATGATCCCTGTCCGTCCC
ACTGGTTGTTGTAGCCACCTCGTCCTCCGTAGCCACCGCGTCCGCCGCGC
ATACCACCGCGTGGTCCACCACGCATACCGCCCATCATCTGGTTCTCCGG
CTTGGGCGTCGCACGCTTAACATCGACCTCCTTGCCGGCGATCTTCTGCT
TGGGCGTCTTCAGCAAATCTGTCACCACCTGCTCCGAATCGAAGGTGATG
AAGCAGAATCCTTTGCGCTGCGACTTTTGCTTGTCGAATGGCATCTCCAC
CTCGACGATATTGCCGAACTGTCCAAAGTAGGTCTTAATCTCCTCATCGC
TGATCTCTGTGGTGAGGCCGCCGACAAAGATCTTGCCGTGCCTGGCCTTG
GCCTTCTTGGGATCGACCTTCTTGCTGTTGATTATGTGCTCATCCGCGGC
GCTGACTTTGTCAATGGCCTCGGTGTTTGTAAACACGATGAAGGCGAATC
CTCGGGACCGACCGGTCTGGGGATCTGTCTTGACATTGATGCTCTCGATC
TCGCCATATTTGCCGAAGTGATCGCG
BO17925.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16901-PC | 927 | sqd-RC | 217..924 | 726..19 | 3540 | 100 | Minus |
CG16901-PA | 966 | sqd-RA | 217..857 | 726..86 | 3205 | 100 | Minus |
CG16901-PB | 1035 | sqd-RB | 217..856 | 726..87 | 3200 | 100 | Minus |
CG16901-PD | 537 | sqd-RD | 1..358 | 444..87 | 1790 | 100 | Minus |
CG16901-PB | 1035 | sqd-RB | 964..1032 | 87..19 | 345 | 100 | Minus |
CG16901-PD | 537 | sqd-RD | 466..534 | 87..19 | 345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqd-RC | 2239 | CG16901-RC | 327..1034 | 726..19 | 3540 | 100 | Minus |
sqd-RE | 2844 | CG16901-RE | 602..1309 | 726..19 | 3540 | 100 | Minus |
sqd-RA | 5551 | CG16901-RA | 331..971 | 726..86 | 3205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13642829..13643095 | 460..726 | 1335 | 100 | Plus |
3R | 32079331 | 3R | 13642511..13642755 | 215..459 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 13642298..13642428 | 86..216 | 655 | 100 | Plus |
3R | 32079331 | 3R | 13636458..13636526 | 19..87 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:00:05 has no hits.
BO17925.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:29 Download gff for
BO17925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16901-PC | 217..927 | 15..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:43 Download gff for
BO17925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RE | 602..1312 | 15..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:46 Download gff for
BO17925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RE | 602..1312 | 15..726 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:46 Download gff for
BO17925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13636454..13636525 | 15..86 | 97 | <- | Plus |
3R | 13642299..13642427 | 87..215 | 100 | <- | Plus |
3R | 13642512..13642755 | 216..459 | 100 | <- | Plus |
3R | 13642829..13643095 | 460..726 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:43 Download gff for
BO17925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9462176..9462247 | 15..86 | 97 | <- | Plus |
arm_3R | 9468021..9468149 | 87..215 | 100 | <- | Plus |
arm_3R | 9468234..9468477 | 216..459 | 100 | <- | Plus |
arm_3R | 9468551..9468817 | 460..726 | 100 | | Plus |
BO17925.5prime Sequence
712 bp (627 high quality bases) assembled on 2006-10-13
> BO17925.5prime
GAAGTTATCAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAA
ACGGCGAGGATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAA
AATGGTGATGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCA
ATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTG
GTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAA
TATGGCGAGATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCG
GTCCCGAGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACA
AAGTCAGCGCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCC
AAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCAC
AGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATA
TCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGA
TTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAA
GACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGA
CGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGC
GGTGGTATGCGC
BO17925.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16901-PA | 966 | sqd-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
CG16901-PB | 1035 | sqd-RB | 1..696 | 17..712 | 3480 | 100 | Plus |
CG16901-PC | 927 | sqd-RC | 1..696 | 17..712 | 3480 | 100 | Plus |
CG16901-PD | 537 | sqd-RD | 1..198 | 515..712 | 990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqd-RC | 2239 | CG16901-RC | 111..806 | 17..712 | 3480 | 100 | Plus |
sqd-RE | 2844 | CG16901-RE | 386..1081 | 17..712 | 3480 | 100 | Plus |
sqd-RA | 5551 | CG16901-RA | 115..810 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13642829..13643103 | 499..225 | 1375 | 100 | Minus |
3R | 32079331 | 3R | 13642543..13642755 | 712..500 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 13645752..13645919 | 184..17 | 840 | 100 | Minus |
3R | 32079331 | 3R | 13643169..13643212 | 224..181 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:09:49 has no hits.
BO17925.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:30 Download gff for
BO17925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16901-PC | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:21 Download gff for
BO17925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RA | 107..810 | 9..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:56 Download gff for
BO17925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RA | 107..810 | 9..712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:56 Download gff for
BO17925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13642543..13642755 | 500..712 | 100 | <- | Minus |
3R | 13642829..13643103 | 225..499 | 100 | <- | Minus |
3R | 13643169..13643209 | 184..224 | 100 | <- | Minus |
3R | 13645753..13645925 | 9..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:21 Download gff for
BO17925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9468265..9468477 | 500..712 | 100 | <- | Minus |
arm_3R | 9471475..9471647 | 9..183 | 97 | | Minus |
arm_3R | 9468551..9468825 | 225..499 | 100 | <- | Minus |
arm_3R | 9468891..9468931 | 184..224 | 100 | <- | Minus |
BO17925.complete Sequence
958 bp assembled on 2006-10-11
GenBank Submission: FJ634257
> BO17925.complete
GAAGTTATCAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAA
ACGGCGAGGATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAA
AATGGTGATGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCA
ATCGGCCGCATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTG
GTCTGAGCTGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAA
TATGGCGAGATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCG
GTCCCGAGGATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACA
AAGTCAGCGCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCC
AAGAAGGCCAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCAC
AGAGATCAGCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATA
TCGTCGAGGTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGA
TTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAA
GACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGA
CGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGC
GGTGGTATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAA
CAACCAGTGGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTACG
GCGGATATGGTGCCGGTGGTTATGGCGACTACTATGCCGGCGGCTACTAT
AATGGATATGACTACGGTTATGGCGGTGGCGGTTTTAACGGTGGCAAGCA
GCGCGGAGGCGGTGGACGCCAGCAGCGGCATCAGCCCTACGCAAGCTTTC
TAGACCAT
BO17925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqd-RC | 927 | CG16901-PC | 1..924 | 17..940 | 4620 | 100 | Plus |
sqd-RE | 927 | CG16901-PE | 1..924 | 17..940 | 4620 | 100 | Plus |
sqd-RA | 966 | CG16901-PA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqd-RC | 2239 | CG16901-RC | 111..1034 | 17..940 | 4620 | 100 | Plus |
sqd-RE | 2844 | CG16901-RE | 386..1309 | 17..940 | 4620 | 100 | Plus |
sqd-RA | 5551 | CG16901-RA | 115..971 | 17..873 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13642829..13643103 | 499..225 | 1375 | 100 | Minus |
3R | 32079331 | 3R | 13642511..13642755 | 744..500 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 13645752..13645919 | 184..17 | 840 | 100 | Minus |
3R | 32079331 | 3R | 13642298..13642428 | 873..743 | 655 | 100 | Minus |
3R | 32079331 | 3R | 13636458..13636526 | 940..872 | 345 | 100 | Minus |
3R | 32079331 | 3R | 13643169..13643212 | 224..181 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:40:17 has no hits.
BO17925.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:22 Download gff for
BO17925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RC | 1..927 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:53 Download gff for
BO17925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RC | 378..1312 | 9..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:44 Download gff for
BO17925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RE | 386..1309 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:22 Download gff for
BO17925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RC | 378..1312 | 9..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:02 Download gff for
BO17925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqd-RE | 386..1309 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:02 Download gff for
BO17925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13642512..13642755 | 500..743 | 100 | <- | Minus |
3R | 13642829..13643103 | 225..499 | 100 | <- | Minus |
3R | 13643169..13643209 | 184..224 | 100 | <- | Minus |
3R | 13636456..13636525 | 873..942 | 97 | <- | Minus |
3R | 13642299..13642427 | 744..872 | 100 | <- | Minus |
3R | 13645753..13645919 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:44 Download gff for
BO17925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9462178..9462247 | 873..942 | 97 | <- | Minus |
arm_3R | 9468021..9468149 | 744..872 | 100 | <- | Minus |
arm_3R | 9468234..9468477 | 500..743 | 100 | <- | Minus |
arm_3R | 9468551..9468825 | 225..499 | 100 | <- | Minus |
arm_3R | 9468891..9468931 | 184..224 | 100 | <- | Minus |
arm_3R | 9471475..9471641 | 17..183 | 100 | | Minus |
BO17925.pep Sequence
Translation from 16 to 958
> BO17925.pep
MAENKQVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASG
QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFA
FIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGKIFVGGLTTEISDE
EIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQK
IAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDG
QGSYGGYGGGYGGYGAGGYGDYYAGGYYNGYDYGYGGGGFNGGKQRGGGG
RQQRHQPYASFLDH
BO17925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqd-PC | 308 | CG16901-PC | 1..308 | 1..308 | 1667 | 100 | Plus |
sqd-PE | 308 | CG16901-PE | 1..308 | 1..308 | 1667 | 100 | Plus |
sqd-PB | 344 | CG16901-PB | 1..344 | 1..308 | 1620 | 89.5 | Plus |
sqd-PA | 321 | CG16901-PA | 1..286 | 1..286 | 1539 | 100 | Plus |
sqd-PD | 178 | CG16901-PD | 1..178 | 167..308 | 763 | 79.8 | Plus |