Clone BO17926 Report

Search the DGRC for BO17926

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG1965-RA
Protein status:BO17926.pep: validated full length
Sequenced Size:2749

Clone Sequence Records

BO17926.3prime Sequence

821 bp (741 high quality bases) assembled on 2006-10-13

> BO17926.3prime
ATGGTCTAGAAAGCTTGCTAAACTATGTAGTCTTTGAAGTATTTGCTTGG
CTTTATCGCTGGATTGCATAAAGATTGGATTGCTTGCATCACAGTTCTCT
AATGTTTGTTTAATATATCCTATAAAAAGTTCCATGTTCTTGAGGGTCTC
GCTGTTCGGTAACAACCAGACTGTAGGCAGGGTATTTACAATGATGTAAG
CTTTGTTTATGGCATCGTTTGGCGTGCAGACTCGCATAGCTAATAACAGG
TAACGATTCAGAAGGGCTCCAATCGCCAGCTCACGCAGTAGCTTATCAGC
CAGGATGCCCTGCCAGCTTAGGAAATTTCGAAACAGCTTTAGACCACTGC
AAAACTGCCTCTGAAAGAATGAGGTCTTCGCCTCTTGCACTTGCTTTGGA
AAAATGGGTATAAATACATCATTTTCTAGGGCTAACCGCATGCGTTCCAT
GATGGATTCAAACAGTTTGTTAAGCTGCTTATTTGTGCCGCTCAAGGGAA
ACTCGCGACCTAATCGATTGATGAACCCAACCAATCTCAGGGTCTGTGTG
GTAGATAATGGATCCCAGCATTCTGTGACCAGAGCAGTCACCTTGGGCAG
CACAATCTTTTCGATGAGCGCCGGCACCAGATTGATATCCGGATCGATTT
TCAGCTGCTCCACGGTTTCATCTGCCTGGGAGGCATAAAGCATGCAGGCC
TGATACCAACGCATATTTTCTATATCCGCATACACGTCCAGCAGTGGCGA
CCAAAGAACAAGTTCGTGTCGCACCAGCGGAGCCAAAACTTTTGGAAGGC
ACAGGCTAACAAATGCGTCCT

BO17926.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-PA 2718 CG1965-RA 1913..2715 821..19 3990 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-RC 3132 CG1965-RC 2027..2829 821..19 4000 99.9 Minus
CG1965-RB 3223 CG1965-RB 2118..2920 821..19 4000 99.9 Minus
CG1965-RA 3127 CG1965-RA 2022..2824 821..19 4000 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7070894..7071218 391..67 1625 100 Minus
3R 32079331 3R 7070337..7070573 821..585 1170 99.6 Minus
3R 32079331 3R 7070631..7070824 585..392 970 100 Minus
3R 32079331 3R 7071273..7071321 67..19 245 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:36:20 has no hits.

BO17926.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:31 Download gff for BO17926.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-PA 1913..2718 15..821 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:14:56 Download gff for BO17926.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 2022..2829 14..821 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:43 Download gff for BO17926.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 2022..2829 14..821 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:43 Download gff for BO17926.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7070337..7070573 585..821 99 -> Minus
3R 7070632..7070824 392..584 100 -> Minus
3R 7070894..7071217 68..391 100 -> Minus
3R 7071273..7071326 14..67 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:14:56 Download gff for BO17926.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2896059..2896295 585..821 99 -> Minus
arm_3R 2896354..2896546 392..584 100 -> Minus
arm_3R 2896616..2896939 68..391 100 -> Minus
arm_3R 2896995..2897048 14..67 96   Minus

BO17926.5prime Sequence

827 bp (692 high quality bases) assembled on 2006-10-13

> BO17926.5prime
GAAGTTATCAGTCGACATGTCGCTTTTTCGCAAACCGAAGAAAATTCAGC
GACGCGTGTTCTCCAGCAACGCTGACGAAGAGGAGGACGGCGCATCCTTG
GATCCGGACGCCGAAATGGAGGCGCCACCGCCTCCCATAATTTCGGGCAA
GAGGGAGAAAGAGAAGAGCCGGAAGGCCATAAAGCCGCAGGAGGACAACA
GCAAGCCAAAGGCGCTGCTCAGCTTCGCAGATGATGAGGATGACGGCGAG
GTGTTCCAGGTGCGAAAGTCGTCGCATAGCAAGAAAGTGATGCGCATGCT
GGACAAGGAACGCCGCAAGAAGAAGCGCGAGGAACGGGCGGAAAACAGCG
GACATCCCGGGGGCGAAAATGGTAGTACACAGCATTTAGAGTCGTCCGGT
GGCCCATCATCGGGTCCCCCGAATTCCAACTCGAATCCTGCCAATGCTGG
CAGATATAAAAGTGCCAGCGATCAGAGTAAAAGTAAAAAAAGTGATAATC
ATATGATCCAAACCGAAATACGCACAGACGACTTTGTGCTAGTGGTAAAG
AAATCTGAGACTCCCGAGGCAATTCTGAACGGTAGAGCTGCCCTTTGCGC
TGGACGGGAGGATATGAGCGATGAAGAAGACCAGCAATCCGAGGATGGTG
GCCATGACAAAACGCGTCACCGTTTCTCCAAGCCAGAACATTTGAAACAG
ATGCTCGAAAGTGGTTCCATTCCGGATGCAGCAATGATACACGCTGCCCG
AAAACGTCGGCAAAGGGCTAGAGAACAGGGTGCAGGCGACTATATACCTA
TTGAGGAGCCAAAGGAGCCGGCCAAGC

BO17926.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-PA 2718 CG1965-RA 1..811 17..827 4030 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-RB 3223 CG1965-RB 110..920 17..827 4040 99.9 Plus
CG1965-RA 3127 CG1965-RA 110..920 17..827 4040 99.9 Plus
CG1965-RC 3132 CG1965-RC 110..925 17..827 3980 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7067787..7068089 236..538 1515 100 Plus
3R 32079331 3R 7068707..7068950 538..781 1220 100 Plus
3R 32079331 3R 7067510..7067729 17..236 1100 100 Plus
3R 32079331 3R 7069005..7069053 779..827 230 98 Plus
Blast to na_te.dros performed on 2015-02-11 15:36:34 has no hits.

BO17926.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:32 Download gff for BO17926.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-PA 1..811 17..827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:14:58 Download gff for BO17926.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 100..920 7..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:47 Download gff for BO17926.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 100..920 7..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:47 Download gff for BO17926.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7069006..7069053 780..827 97   Plus
3R 7067788..7068089 237..538 100 -> Plus
3R 7068708..7068948 539..779 100 -> Plus
3R 7067500..7067729 7..236 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:14:58 Download gff for BO17926.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2893222..2893451 7..236 98 -> Plus
arm_3R 2893510..2893811 237..538 100 -> Plus
arm_3R 2894430..2894670 539..779 100 -> Plus
arm_3R 2894728..2894775 780..827 97   Plus

BO17926.complete Sequence

2749 bp assembled on 2007-03-23

GenBank Submission: FJ634258

> BO17926.complete
GAAGTTATCAGTCGACATGTCGCTTTTTCGCAAACCGAAGAAAATTCAGC
GACGCGTGTTCTCCAGCAACGCTGACGAAGAGGAGGACGGCGCATCCTTG
GATCCGGACGCCGAAATGGAGGCGCCACCGCCTCCCATAATTTCGGGCAA
GAGGGAGAAAGAGAAGAGCCGGAAGGCCATAAAGCCGCAGGAGGACAACA
GCAAGCCAAAGGCGCTGCTCAGCTTCGCAGATGATGAGGATGACGGCGAG
GTGTTCCAGGTGCGAAAGTCGTCGCATAGCAAGAAAGTGATGCGCATGCT
GGACAAGGAACGCCGCAAGAAGAAGCGCGAGGAACGGGCGGAAAACAGCG
GACATCCCGGGGGCGAAAATGGTAGTACACAGCATTTAGAGTCGTCCGGT
GGCCCATCATCGGGTCCCCCGAATTCCAACTCGAATCCTGCCAATGCTGG
CAGATATAAAAGTGCCAGCGATCAGAGTAAAAGTAAAAAAAGTGATAATC
ATATGATCCAAACCGAAATACGCACAGACGACTTTGTGCTAGTGGTAAAG
AAATCTGAGACTCCCGAGGCAATTCTGAACGGTAGAGCTGCCCTTTGCGC
TGGACGGGAGGATATGAGCGATGAAGAAGACCAGCAATCCGAGGATGGTG
GCCATGACAAAACGCGTCACCGTTTCTCCAAGCCAGAACATTTGAAACAG
ATGCTCGAAAGTGGTTCCATTCCGGATGCAGCAATGATACACGCTGCCCG
AAAACGTCGGCAAAGGGCTAGAGAACAGGGTGCAGGCGACTATATACCTA
TTGAGGAGCCCAAGGAGCCGGCCAAGCTAAGCAACCGTCTGCCCTGCGAA
GATGTTGAGGGTGATCAGTCGGATGATGAAGAACGCATGGACATGAACGA
TATTACGGGACGCAAAGAGCGTGAAGAGCGGCGCGAGCAATTTTATGCTG
TCGAAAATGATTCCACCGACGGAGATTCAGATCGCGAGATGAACGAGTGG
GAAAACCAGCAGATCCGCAAGGGTGTTACGGCAGCCCAGTTGGTCCATTC
TCAGCATGAAACAGTGCTCTCCCGTTTTATGATCAAGCCTGCCCCGTCGG
GCATCGGAACCGGCATGGACGACGGAGATTCAACAGCGGCACAGTCCACG
TCCACTCTGCTGGAGCAGGCCTATGCTAAAAATGCCCTTGAGCGCACCAA
CTTAGCCGCAGCAGTTCGATCATCCGTCAAAACCAAGAAGGAAAAGGCCA
AGGCTACAGCATTGCGAACTCCTCAGGAAATCCTAGCTGCCATTCAATCG
CGTCTTAGCGAGCTTAAAGAGCGGTCGGCTGATCACAGCGCTAGTATGGC
CAGGATTAGTACAGAACTAAAGGCATTAAAGCTCCAGCAGTTAGAGTGCC
AGCAGAATGCACCGACAGCGGCCGCAAAGTACAAGTTTTACCAAGAAATA
AAGTGCTATGTGAATGACCTTGTCGATTGCCTCTCGGAAAAAGCGCCAGT
AATATACGATCTTGAGAAGCGTGCACTGCAACAGTATGGCAAAAATCAAC
GTTATTTGGTAAACAGACGGAGGCAGGATGTACGTGATCAGGCCAAAGAA
ATCGCCGAATCAGCAAAACCTATAACAGCTGCCTCCCGCCGAACACCTGA
TTATGAAGAACAAGTTCGCCGCGCAGCGGAACGGGAGGGTCGGAGGACAC
GTCGCCGATGCGAGCGCGAGCGCAATGATCTGCTCTCGTCCCACCTGGAT
GGCATGTCAAGCGACGATGAAATTGCCGATCAACAGCAGGAACTGAGTGT
GACTACGATGGCGCAGATAGAATCACAGTCGGTGGACGCCCTTGAAGACG
TTACCGACGACTTTAGCAAGATCGAGCTAATACTAATGAAGTTTTTTGCC
TGGCGTAAAACTGACATGTCGTCATACCAGGACGCATTTGTTAGCCTGTG
CCTTCCAAAAGTCTTGGCTCCGCTGGTGCGACACGAACTTGTTCTTTGGT
CGCCACTGCTGGACGTGTATGCGGATATAGAAAATATGCGTTGGTATCAG
GCCTGCATGCTTTATGCCTCCCAGGCAGATGAAACCGTGGAGCAGCTGAA
AATCGATCCGGATATCAATCTGGTGCCGGCGCTCATCGAAAAGATTGTGC
TGCCCAAGGTGACTGCTCTGGTCACAGAATGCTGGGATCCATTATCTACC
ACACAGACCCTGAGATTGGTTGGGTTCATCAATCGATTAGGTCGCGAGTT
TCCCTTGAGCGGCACAAATAAGCAGCTTAACAAACTGTTTGAATCCATCA
TGGAACGCATGCGGTTAGCCCTAGAAAATGATGTATTTATACCCATTTTT
CCAAAGCAAGTGCAAGAGGCGAAGACCTCATTCTTTCAGAGGCAGTTTTG
CAGTGGTCTAAAGCTGTTTCGAAATTTCCTAAGCTGGCAGGGCATCCTGG
CTGATAAGCTACTGCGTGAGCTGGCGATTGGAGCCCTTCTGAATCGTTAC
CTGTTATTAGCTATGCGAGTCTGCACGCCAAACGATGCCATAAACAAAGC
TTACATCATTGTAAATACCCTGCCTACAGTCTGGTTGTTACCGAACAGCG
AGACCCTCAAGAACATGGAACTTTTTATAGGATATATTAAACAAACATTA
GAGAACTGTGATGCAAGCAATCCAATCTTTATGCAATCCAGCGATAAAGC
CAAGCAAATACTTCAAAGACTACATAGTTTAGCAAGCTTTCTAGACCAT

BO17926.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-RA 2718 CG1965-PA 1..2715 17..2731 13575 100 Plus
CG1965-RB 954 CG1965-PB 1..946 17..962 4730 100 Plus
CG1965-RC 531 CG1965-PC 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-RA 3127 CG1965-RA 110..2824 17..2731 13575 100 Plus
CG1965-RC 3132 CG1965-RC 110..2829 17..2731 13490 99.8 Plus
CG1965-RB 3223 CG1965-RB 1152..2920 963..2731 8845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7069285..7069938 963..1616 3270 100 Plus
3R 32079331 3R 7070025..7070573 1617..2165 2745 100 Plus
3R 32079331 3R 7070894..7071218 2359..2683 1625 100 Plus
3R 32079331 3R 7067787..7068089 236..538 1515 100 Plus
3R 32079331 3R 7068707..7068950 538..781 1220 100 Plus
3R 32079331 3R 7067510..7067729 17..236 1100 100 Plus
3R 32079331 3R 7070631..7070824 2165..2358 970 100 Plus
3R 32079331 3R 7069005..7069188 779..962 920 100 Plus
3R 32079331 3R 7071273..7071321 2683..2731 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:14:42 has no hits.

BO17926.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:56 Download gff for BO17926.complete
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 1..2718 17..2735 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:14 Download gff for BO17926.complete
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 89..2818 7..2736 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:10 Download gff for BO17926.complete
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 110..2824 17..2733 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:56 Download gff for BO17926.complete
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 77..2806 7..2736 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:46 Download gff for BO17926.complete
Subject Subject Range Query Range Percent Splice Strand
CG1965-RA 110..2824 17..2733 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:46 Download gff for BO17926.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7070632..7070824 2166..2358 100 -> Plus
3R 7070894..7071217 2359..2682 100 -> Plus
3R 7071273..7071321 2683..2733 96   Plus
3R 7067788..7068089 237..538 100 -> Plus
3R 7068708..7068948 539..779 100 -> Plus
3R 7069006..7069188 780..962 100 -> Plus
3R 7067510..7067729 17..236 100 -> Plus
3R 7069285..7069938 963..1616 100 -> Plus
3R 7070025..7070573 1617..2165 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:10 Download gff for BO17926.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2893232..2893451 17..236 100 -> Plus
arm_3R 2893510..2893811 237..538 100 -> Plus
arm_3R 2894430..2894670 539..779 100 -> Plus
arm_3R 2894728..2894910 780..962 100 -> Plus
arm_3R 2895007..2895660 963..1616 100 -> Plus
arm_3R 2895747..2896295 1617..2165 100 -> Plus
arm_3R 2896354..2896546 2166..2358 100 -> Plus
arm_3R 2896616..2896939 2359..2682 100 -> Plus
arm_3R 2896995..2897043 2683..2733 96   Plus

BO17926.pep Sequence

Translation from 16 to 2749

> BO17926.pep
MSLFRKPKKIQRRVFSSNADEEEDGASLDPDAEMEAPPPPIISGKREKEK
SRKAIKPQEDNSKPKALLSFADDEDDGEVFQVRKSSHSKKVMRMLDKERR
KKKREERAENSGHPGGENGSTQHLESSGGPSSGPPNSNSNPANAGRYKSA
SDQSKSKKSDNHMIQTEIRTDDFVLVVKKSETPEAILNGRAALCAGREDM
SDEEDQQSEDGGHDKTRHRFSKPEHLKQMLESGSIPDAAMIHAARKRRQR
AREQGAGDYIPIEEPKEPAKLSNRLPCEDVEGDQSDDEERMDMNDITGRK
EREERREQFYAVENDSTDGDSDREMNEWENQQIRKGVTAAQLVHSQHETV
LSRFMIKPAPSGIGTGMDDGDSTAAQSTSTLLEQAYAKNALERTNLAAAV
RSSVKTKKEKAKATALRTPQEILAAIQSRLSELKERSADHSASMARISTE
LKALKLQQLECQQNAPTAAAKYKFYQEIKCYVNDLVDCLSEKAPVIYDLE
KRALQQYGKNQRYLVNRRRQDVRDQAKEIAESAKPITAASRRTPDYEEQV
RRAAEREGRRTRRRCERERNDLLSSHLDGMSSDDEIADQQQELSVTTMAQ
IESQSVDALEDVTDDFSKIELILMKFFAWRKTDMSSYQDAFVSLCLPKVL
APLVRHELVLWSPLLDVYADIENMRWYQACMLYASQADETVEQLKIDPDI
NLVPALIEKIVLPKVTALVTECWDPLSTTQTLRLVGFINRLGREFPLSGT
NKQLNKLFESIMERMRLALENDVFIPIFPKQVQEAKTSFFQRQFCSGLKL
FRNFLSWQGILADKLLRELAIGALLNRYLLLAMRVCTPNDAINKAYIIVN
TLPTVWLLPNSETLKNMELFIGYIKQTLENCDASNPIFMQSSDKAKQILQ
RLHSLASFLDH

BO17926.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1965-PA 905 CG1965-PA 1..905 1..905 4617 100 Plus
CG1965-PB 317 CG1965-PB 1..315 1..315 1632 100 Plus
CG1965-PC 176 CG1965-PC 1..175 1..175 898 99.4 Plus
ncm-PA 1330 CG12750-PA 957..1287 16..334 181 24.3 Plus