Clone Sequence Records
BO17931.3prime Sequence
658 bp (638 high quality bases) assembled on 2006-10-13
> BO17931.3prime
ATGGTCTAGAAAGCTTGCTATGGAACTAATATAGTAGGCGCCTTTGCAAA
CGTTGCATTTGTACTTGCGGCAGTTTTGTTCGCCAACTGGCTCCAGTGAT
CGAAAGTACTTGGATACCACCATCAAAATATCCTCACGTTGTCTCTGAAG
GAAATCTTCGCCGAAGTCATCAAAGGTTTTAACGCAATGCATTAGAATGC
GATAGAGGACCGCTTCAGTTGATACGAACGTATTCAGCGAGCGATCAATG
TAATCCACGTTCTCCTCTACGAATGTGCGGGTCATCTGCATTAGAAGCTG
TACAGCCTGATCGCTGAAGTATCTGGCCATGGCCTCCAAAACGTCCGTAA
AGCTAGCCAGATTGCCGATATGCTCAACGAATTTTCCGCCGAACTTCTGT
GCGAGCATGTCCATATTGATCACCATCTGCCCGCCAATGCCGTAACTCAG
TATTTGGGGCAATAAAGTGGTGGCCACTGTAAGTCCCTGACTTAGGTGTG
AGTTCATATTGTGAAGACTGAGGAGTACCTCCTTAAAAGGGATTTCGTTG
AGGGTTCTCACAATATCAAATTGACCAGATTCTTTGTGCAGCTTAACTGT
TTCCTGGGAAATTCGATCAAAGATTTTTCTGGATTGATTTCGAAGTGCTC
GCCTCAAG
BO17931.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7730-PC | 1746 | CG7730-RC | 1104..1743 | 658..19 | 3150 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7730-RC | 2123 | CG7730-RC | 1258..1897 | 658..19 | 3170 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17028976..17029588 | 631..19 | 3035 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-05 00:37:46 has no hits.
BO17931.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:36 Download gff for
BO17931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7730-PC | 1104..1746 | 15..658 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:56:31 Download gff for
BO17931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7730-RC | 1258..1903 | 12..658 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:52:38 Download gff for
BO17931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7730-RC | 1258..1903 | 12..658 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:52:38 Download gff for
BO17931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17028888..17028917 | 629..658 | 100 | -> | Minus |
3L | 17028979..17029594 | 12..628 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:56:31 Download gff for
BO17931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17021988..17022017 | 629..658 | 100 | -> | Minus |
arm_3L | 17022079..17022694 | 12..628 | 99 | | Minus |
BO17931.5prime Sequence
695 bp (661 high quality bases) assembled on 2006-10-13
> BO17931.5prime
GAAGTTATCAGTCGACATGGAGAAAACGGAAAATACTAAAAATTCTCGCA
CCACCTACGAAGTGCAAAGGGATTTTGGCTTCAGCAGTGGGCTGCGTTCG
GAAATTATTTGGGATTCACTAGCCCCGGATCAGGGTGATGTTCTAAAGCA
AAAGATAGAGAACCTCATTCGCGATGATGACGCCCGCAATGGCAAGGCGA
TTCAACGAAAGCGGGAGCAGCTTTTCCGGAATATTTGGCAGCAGCGCTGT
TACACCAACGGCACATTGCTCTCCGCCATAATTTACGTGCTAGTCACGCC
GGATACAGACCCGGAATCGGCGCTGCAGTCTACCAACTACTCCTGTCACC
CGGTTTTTCGCACACGGCGCTGTTTGAAGGGCGAGAACAGCGCCGCTTGT
TGCATGATTTTTGTGGACGAAAATGCACGGGTCTACGCCAATTGGGAGCA
GTTCGTCTTCCGGAACACCTTGCCCAAGGGCTTGATGATCGCCCCTAGCC
AAGGAATTTACACATTCACCGGCGACGAGGAGCCGGGCGTCCAGTTGATG
GTCCATCCAACGCCAGCAGCACGTGCCAGGTATAAAATTCTGAATGCTGG
CGATAAAGTCGCCACTGTTGGTAGCTTGGTGGCCAGTGTTCCGGCGGCTG
CAGCTTTGGCTGTGCCTCGGGGCGCTCCGCTCGCGATTGCCGCCA
BO17931.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7730-PC | 1746 | CG7730-RC | 1..679 | 17..695 | 3370 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7730-RC | 2123 | CG7730-RC | 155..833 | 17..695 | 3380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17027828..17028405 | 118..695 | 2875 | 99.8 | Plus |
3L | 28110227 | 3L | 17027669..17027769 | 17..117 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:31:05 has no hits.
BO17931.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:37 Download gff for
BO17931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7730-PC | 1..678 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:29:00 Download gff for
BO17931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7730-RC | 143..832 | 3..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:05 Download gff for
BO17931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7730-RC | 143..832 | 3..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:05 Download gff for
BO17931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17027657..17027769 | 3..117 | 95 | -> | Plus |
3L | 17027828..17028404 | 118..694 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:29:00 Download gff for
BO17931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17020757..17020869 | 3..117 | 95 | -> | Plus |
arm_3L | 17020928..17021504 | 118..694 | 99 | | Plus |
BO17931.complete Sequence
1777 bp assembled on 2006-12-18
GenBank Submission: FJ638759
> BO17931.complete
GAAGTTATCAGTCGACATGGAGAAAACGGAAAATACTAAAAATTCTCGCA
CCACCTACGAAGTGCAAAGGGATTTTGGCTTCAGCAGTGGGCTGCGTTCG
GAAATTATTTGGGATTCACTAGCCCCGGATCAGGGTGATGTTCTAAAGCA
AAAGATAGAGAACCTCATTCGCGATGATGACGCCCGCAATGGCAAGGCGA
TTCAACGAAAGCGGGAGCAGCTTTTCCGGAATATTTGGCAGCAGCGCTGT
TACACCAACGGCACATTGCTCTCCGCCATAATTTACGTGCTAGTCACGCC
GGATACAGACCCGGAATCGGCGCTGCAGTCTACCAACTACTCCTGTCACC
CGGTTTTTCGCACACGGCGCTGTTTGAAGGGCGAGAACAGCGCCGCTTGT
TGCATGATTTTTGTGGACGAAAATGCACGGGTCTACGCCAATTGGGAGCA
GTTCGTCTTCCGGAACACCTTGCCCAAGGGCTTGATGATCGCCCCTAGCC
AAGGAATTTACACATTCACCGGCGACGAGGAGCCGGGCGTCCAGTTGATG
GTCCATCCAACGCCAGCAGCACGTGCCAGGTATAAAATTCTGAATGCTGG
CGATAAAGTCGCCACTGTTGGTAGCTTGGTGGCCAGTGTTCCGGCGGCTG
CAGCTTTGGCTGTGCCTCTGGGCGCTCCGCTCGCGATTGCCGCCACCGCT
GTGGGCGTGGCCACCGGAGTCTACAGCACCCTGCGCTCTGCCTCCCATCT
TATCGATCGTCGACGGCACGGACAGTCCACCTGCATCACGGATACCGAGG
CACGCAGCTCTTGGTTGGGCGTAGCAGGTGGCGTTGTGGGTCTAGGAGCC
AGTGGGGCCACAAAAGCTCTGTCCACCGCTGCAGGAGCTGGCTACAAAGT
TAATCCCGCTGCGCAGTTAGCCGTTAGGGGGATAAATGGTGCCTCAATGG
TCATCGCCGGAACGGGTGTAGCGAATGGTGTTTACGATTTATATTCGAAA
CATGGAGATGACCAAGCCATAAACAGCTTGGACATGCTGAAGATGGCCTC
GCACCTTGTGATATTCACTCATTCCATCAACAATATGCGCATCGCTTCCA
AGGCTACCAACGGGTCTTCCTTGAGGCGAGCACTTCGAAATCAATCCAGA
AAAATCTTTGATCGAATCTCCCAGGAAACAGTTAAGCTGCACAATGAATC
TGGTCAATTTGATATTGTGAGAACCCTCAACGAAATCCCTTTTAAGGAGG
TACTCCTCAGTCTTCACAATATGAACTCACACCTAAGTCAGGGACTTACA
GTGGCCACCACTTTATTGCCCCAAATACTGAGTTACGGCATTGGCGGGCA
GATGGTGATCAATATGGACATGCTCGCACAGAAGTTCGGCGGAAAATTCG
TTGAGCATATCGGCAATCTGGCTAGCTTTACGGACGTTTTGGAGGCCATG
GCCAGATACTTCAGCGATCAGGCTGTACAGCTTCTAATGCAGATGACCCG
CACATTCGTAGAGGAGAACGTGGATTACATTGATCGCTCGCTGAATACGT
TCGTATCAACTGAAGCGGTCCTCTATCGCATTCTAATGCATTGCGTTAAA
ACCTTTGATGACTTCGGCGAAGATTTCCTTCAGAGACAACGTGAGGATAT
TTTGATGGTGGTATCCAAGTACTTTCGATCACTGGAGCCAGTTGGCGAAC
AAAACTGCCGCAAGTACAAATGCAACGTTTGCAAAGGCGCCTACTATATT
AGTTCCATAGCAAGCTTTCTAGACCAT
BO17931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7730-RC | 1746 | CG7730-PC | 1..1743 | 17..1759 | 8715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7730-RC | 2123 | CG7730-RC | 155..1897 | 17..1759 | 8715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17027828..17028707 | 118..997 | 4400 | 100 | Plus |
3L | 28110227 | 3L | 17028976..17029588 | 1147..1759 | 3065 | 100 | Plus |
3L | 28110227 | 3L | 17028765..17028917 | 997..1149 | 765 | 100 | Plus |
3L | 28110227 | 3L | 17027669..17027769 | 17..117 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:35:06 has no hits.
BO17931.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:01 Download gff for
BO17931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7730-RC | 1..1746 | 17..1763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:36 Download gff for
BO17931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7730-RC | 137..1897 | 3..1766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:27 Download gff for
BO17931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7730-RC | 155..1897 | 17..1761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:02 Download gff for
BO17931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7730-RC | 137..1897 | 3..1766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:42 Download gff for
BO17931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7730-RC | 155..1897 | 17..1761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:42 Download gff for
BO17931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17028766..17028917 | 998..1149 | 100 | -> | Plus |
3L | 17027669..17027769 | 17..117 | 100 | -> | Plus |
3L | 17027828..17028707 | 118..997 | 100 | -> | Plus |
3L | 17028979..17029588 | 1150..1761 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:27 Download gff for
BO17931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17020769..17020869 | 17..117 | 100 | -> | Plus |
arm_3L | 17020928..17021807 | 118..997 | 100 | -> | Plus |
arm_3L | 17021866..17022017 | 998..1149 | 100 | -> | Plus |
arm_3L | 17022079..17022688 | 1150..1761 | 99 | | Plus |
BO17931.pep Sequence
Translation from 16 to 1777
> BO17931.pep
MEKTENTKNSRTTYEVQRDFGFSSGLRSEIIWDSLAPDQGDVLKQKIENL
IRDDDARNGKAIQRKREQLFRNIWQQRCYTNGTLLSAIIYVLVTPDTDPE
SALQSTNYSCHPVFRTRRCLKGENSAACCMIFVDENARVYANWEQFVFRN
TLPKGLMIAPSQGIYTFTGDEEPGVQLMVHPTPAARARYKILNAGDKVAT
VGSLVASVPAAAALAVPLGAPLAIAATAVGVATGVYSTLRSASHLIDRRR
HGQSTCITDTEARSSWLGVAGGVVGLGASGATKALSTAAGAGYKVNPAAQ
LAVRGINGASMVIAGTGVANGVYDLYSKHGDDQAINSLDMLKMASHLVIF
THSINNMRIASKATNGSSLRRALRNQSRKIFDRISQETVKLHNESGQFDI
VRTLNEIPFKEVLLSLHNMNSHLSQGLTVATTLLPQILSYGIGGQMVINM
DMLAQKFGGKFVEHIGNLASFTDVLEAMARYFSDQAVQLLMQMTRTFVEE
NVDYIDRSLNTFVSTEAVLYRILMHCVKTFDDFGEDFLQRQREDILMVVS
KYFRSLEPVGEQNCRKYKCNVCKGAYYISSIASFLDH
BO17931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7730-PC | 581 | CG7730-PC | 1..581 | 1..581 | 2970 | 100 | Plus |
pst-PG | 682 | CG8588-PG | 7..451 | 6..425 | 827 | 43 | Plus |
pst-PE | 682 | CG8588-PE | 7..451 | 6..425 | 827 | 43 | Plus |
pst-PF | 707 | CG8588-PF | 7..476 | 6..425 | 792 | 40.9 | Plus |
CG32243-PA | 485 | CG32243-PA | 239..481 | 339..578 | 199 | 26.6 | Plus |
pst-PG | 682 | CG8588-PG | 473..679 | 364..578 | 177 | 25 | Plus |
pst-PE | 682 | CG8588-PE | 473..679 | 364..578 | 177 | 25 | Plus |
pst-PF | 707 | CG8588-PF | 498..704 | 364..578 | 177 | 25 | Plus |