Clone BO17931 Report

Search the DGRC for BO17931

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG7730-RC
Protein status:BO17931.pep: validated full length
Sequenced Size:1777

Clone Sequence Records

BO17931.3prime Sequence

658 bp (638 high quality bases) assembled on 2006-10-13

> BO17931.3prime
ATGGTCTAGAAAGCTTGCTATGGAACTAATATAGTAGGCGCCTTTGCAAA
CGTTGCATTTGTACTTGCGGCAGTTTTGTTCGCCAACTGGCTCCAGTGAT
CGAAAGTACTTGGATACCACCATCAAAATATCCTCACGTTGTCTCTGAAG
GAAATCTTCGCCGAAGTCATCAAAGGTTTTAACGCAATGCATTAGAATGC
GATAGAGGACCGCTTCAGTTGATACGAACGTATTCAGCGAGCGATCAATG
TAATCCACGTTCTCCTCTACGAATGTGCGGGTCATCTGCATTAGAAGCTG
TACAGCCTGATCGCTGAAGTATCTGGCCATGGCCTCCAAAACGTCCGTAA
AGCTAGCCAGATTGCCGATATGCTCAACGAATTTTCCGCCGAACTTCTGT
GCGAGCATGTCCATATTGATCACCATCTGCCCGCCAATGCCGTAACTCAG
TATTTGGGGCAATAAAGTGGTGGCCACTGTAAGTCCCTGACTTAGGTGTG
AGTTCATATTGTGAAGACTGAGGAGTACCTCCTTAAAAGGGATTTCGTTG
AGGGTTCTCACAATATCAAATTGACCAGATTCTTTGTGCAGCTTAACTGT
TTCCTGGGAAATTCGATCAAAGATTTTTCTGGATTGATTTCGAAGTGCTC
GCCTCAAG

BO17931.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7730-PC 1746 CG7730-RC 1104..1743 658..19 3150 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7730-RC 2123 CG7730-RC 1258..1897 658..19 3170 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17028976..17029588 631..19 3035 99.7 Minus
Blast to na_te.dros performed on 2015-02-05 00:37:46 has no hits.

BO17931.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:36 Download gff for BO17931.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7730-PC 1104..1746 15..658 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:56:31 Download gff for BO17931.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 1258..1903 12..658 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:52:38 Download gff for BO17931.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 1258..1903 12..658 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:52:38 Download gff for BO17931.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17028888..17028917 629..658 100 -> Minus
3L 17028979..17029594 12..628 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:56:31 Download gff for BO17931.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17021988..17022017 629..658 100 -> Minus
arm_3L 17022079..17022694 12..628 99   Minus

BO17931.5prime Sequence

695 bp (661 high quality bases) assembled on 2006-10-13

> BO17931.5prime
GAAGTTATCAGTCGACATGGAGAAAACGGAAAATACTAAAAATTCTCGCA
CCACCTACGAAGTGCAAAGGGATTTTGGCTTCAGCAGTGGGCTGCGTTCG
GAAATTATTTGGGATTCACTAGCCCCGGATCAGGGTGATGTTCTAAAGCA
AAAGATAGAGAACCTCATTCGCGATGATGACGCCCGCAATGGCAAGGCGA
TTCAACGAAAGCGGGAGCAGCTTTTCCGGAATATTTGGCAGCAGCGCTGT
TACACCAACGGCACATTGCTCTCCGCCATAATTTACGTGCTAGTCACGCC
GGATACAGACCCGGAATCGGCGCTGCAGTCTACCAACTACTCCTGTCACC
CGGTTTTTCGCACACGGCGCTGTTTGAAGGGCGAGAACAGCGCCGCTTGT
TGCATGATTTTTGTGGACGAAAATGCACGGGTCTACGCCAATTGGGAGCA
GTTCGTCTTCCGGAACACCTTGCCCAAGGGCTTGATGATCGCCCCTAGCC
AAGGAATTTACACATTCACCGGCGACGAGGAGCCGGGCGTCCAGTTGATG
GTCCATCCAACGCCAGCAGCACGTGCCAGGTATAAAATTCTGAATGCTGG
CGATAAAGTCGCCACTGTTGGTAGCTTGGTGGCCAGTGTTCCGGCGGCTG
CAGCTTTGGCTGTGCCTCGGGGCGCTCCGCTCGCGATTGCCGCCA

BO17931.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7730-PC 1746 CG7730-RC 1..679 17..695 3370 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7730-RC 2123 CG7730-RC 155..833 17..695 3380 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17027828..17028405 118..695 2875 99.8 Plus
3L 28110227 3L 17027669..17027769 17..117 505 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:31:05 has no hits.

BO17931.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:37 Download gff for BO17931.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7730-PC 1..678 17..694 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:29:00 Download gff for BO17931.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 143..832 3..694 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:05 Download gff for BO17931.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 143..832 3..694 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:05 Download gff for BO17931.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17027657..17027769 3..117 95 -> Plus
3L 17027828..17028404 118..694 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:29:00 Download gff for BO17931.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17020757..17020869 3..117 95 -> Plus
arm_3L 17020928..17021504 118..694 99   Plus

BO17931.complete Sequence

1777 bp assembled on 2006-12-18

GenBank Submission: FJ638759

> BO17931.complete
GAAGTTATCAGTCGACATGGAGAAAACGGAAAATACTAAAAATTCTCGCA
CCACCTACGAAGTGCAAAGGGATTTTGGCTTCAGCAGTGGGCTGCGTTCG
GAAATTATTTGGGATTCACTAGCCCCGGATCAGGGTGATGTTCTAAAGCA
AAAGATAGAGAACCTCATTCGCGATGATGACGCCCGCAATGGCAAGGCGA
TTCAACGAAAGCGGGAGCAGCTTTTCCGGAATATTTGGCAGCAGCGCTGT
TACACCAACGGCACATTGCTCTCCGCCATAATTTACGTGCTAGTCACGCC
GGATACAGACCCGGAATCGGCGCTGCAGTCTACCAACTACTCCTGTCACC
CGGTTTTTCGCACACGGCGCTGTTTGAAGGGCGAGAACAGCGCCGCTTGT
TGCATGATTTTTGTGGACGAAAATGCACGGGTCTACGCCAATTGGGAGCA
GTTCGTCTTCCGGAACACCTTGCCCAAGGGCTTGATGATCGCCCCTAGCC
AAGGAATTTACACATTCACCGGCGACGAGGAGCCGGGCGTCCAGTTGATG
GTCCATCCAACGCCAGCAGCACGTGCCAGGTATAAAATTCTGAATGCTGG
CGATAAAGTCGCCACTGTTGGTAGCTTGGTGGCCAGTGTTCCGGCGGCTG
CAGCTTTGGCTGTGCCTCTGGGCGCTCCGCTCGCGATTGCCGCCACCGCT
GTGGGCGTGGCCACCGGAGTCTACAGCACCCTGCGCTCTGCCTCCCATCT
TATCGATCGTCGACGGCACGGACAGTCCACCTGCATCACGGATACCGAGG
CACGCAGCTCTTGGTTGGGCGTAGCAGGTGGCGTTGTGGGTCTAGGAGCC
AGTGGGGCCACAAAAGCTCTGTCCACCGCTGCAGGAGCTGGCTACAAAGT
TAATCCCGCTGCGCAGTTAGCCGTTAGGGGGATAAATGGTGCCTCAATGG
TCATCGCCGGAACGGGTGTAGCGAATGGTGTTTACGATTTATATTCGAAA
CATGGAGATGACCAAGCCATAAACAGCTTGGACATGCTGAAGATGGCCTC
GCACCTTGTGATATTCACTCATTCCATCAACAATATGCGCATCGCTTCCA
AGGCTACCAACGGGTCTTCCTTGAGGCGAGCACTTCGAAATCAATCCAGA
AAAATCTTTGATCGAATCTCCCAGGAAACAGTTAAGCTGCACAATGAATC
TGGTCAATTTGATATTGTGAGAACCCTCAACGAAATCCCTTTTAAGGAGG
TACTCCTCAGTCTTCACAATATGAACTCACACCTAAGTCAGGGACTTACA
GTGGCCACCACTTTATTGCCCCAAATACTGAGTTACGGCATTGGCGGGCA
GATGGTGATCAATATGGACATGCTCGCACAGAAGTTCGGCGGAAAATTCG
TTGAGCATATCGGCAATCTGGCTAGCTTTACGGACGTTTTGGAGGCCATG
GCCAGATACTTCAGCGATCAGGCTGTACAGCTTCTAATGCAGATGACCCG
CACATTCGTAGAGGAGAACGTGGATTACATTGATCGCTCGCTGAATACGT
TCGTATCAACTGAAGCGGTCCTCTATCGCATTCTAATGCATTGCGTTAAA
ACCTTTGATGACTTCGGCGAAGATTTCCTTCAGAGACAACGTGAGGATAT
TTTGATGGTGGTATCCAAGTACTTTCGATCACTGGAGCCAGTTGGCGAAC
AAAACTGCCGCAAGTACAAATGCAACGTTTGCAAAGGCGCCTACTATATT
AGTTCCATAGCAAGCTTTCTAGACCAT

BO17931.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7730-RC 1746 CG7730-PC 1..1743 17..1759 8715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7730-RC 2123 CG7730-RC 155..1897 17..1759 8715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17027828..17028707 118..997 4400 100 Plus
3L 28110227 3L 17028976..17029588 1147..1759 3065 100 Plus
3L 28110227 3L 17028765..17028917 997..1149 765 100 Plus
3L 28110227 3L 17027669..17027769 17..117 505 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:35:06 has no hits.

BO17931.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:01 Download gff for BO17931.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 1..1746 17..1763 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:36 Download gff for BO17931.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 137..1897 3..1766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:27 Download gff for BO17931.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 155..1897 17..1761 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:02 Download gff for BO17931.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 137..1897 3..1766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:42 Download gff for BO17931.complete
Subject Subject Range Query Range Percent Splice Strand
CG7730-RC 155..1897 17..1761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:42 Download gff for BO17931.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17028766..17028917 998..1149 100 -> Plus
3L 17027669..17027769 17..117 100 -> Plus
3L 17027828..17028707 118..997 100 -> Plus
3L 17028979..17029588 1150..1761 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:27 Download gff for BO17931.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17020769..17020869 17..117 100 -> Plus
arm_3L 17020928..17021807 118..997 100 -> Plus
arm_3L 17021866..17022017 998..1149 100 -> Plus
arm_3L 17022079..17022688 1150..1761 99   Plus

BO17931.pep Sequence

Translation from 16 to 1777

> BO17931.pep
MEKTENTKNSRTTYEVQRDFGFSSGLRSEIIWDSLAPDQGDVLKQKIENL
IRDDDARNGKAIQRKREQLFRNIWQQRCYTNGTLLSAIIYVLVTPDTDPE
SALQSTNYSCHPVFRTRRCLKGENSAACCMIFVDENARVYANWEQFVFRN
TLPKGLMIAPSQGIYTFTGDEEPGVQLMVHPTPAARARYKILNAGDKVAT
VGSLVASVPAAAALAVPLGAPLAIAATAVGVATGVYSTLRSASHLIDRRR
HGQSTCITDTEARSSWLGVAGGVVGLGASGATKALSTAAGAGYKVNPAAQ
LAVRGINGASMVIAGTGVANGVYDLYSKHGDDQAINSLDMLKMASHLVIF
THSINNMRIASKATNGSSLRRALRNQSRKIFDRISQETVKLHNESGQFDI
VRTLNEIPFKEVLLSLHNMNSHLSQGLTVATTLLPQILSYGIGGQMVINM
DMLAQKFGGKFVEHIGNLASFTDVLEAMARYFSDQAVQLLMQMTRTFVEE
NVDYIDRSLNTFVSTEAVLYRILMHCVKTFDDFGEDFLQRQREDILMVVS
KYFRSLEPVGEQNCRKYKCNVCKGAYYISSIASFLDH

BO17931.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7730-PC 581 CG7730-PC 1..581 1..581 2970 100 Plus
pst-PG 682 CG8588-PG 7..451 6..425 827 43 Plus
pst-PE 682 CG8588-PE 7..451 6..425 827 43 Plus
pst-PF 707 CG8588-PF 7..476 6..425 792 40.9 Plus
CG32243-PA 485 CG32243-PA 239..481 339..578 199 26.6 Plus
pst-PG 682 CG8588-PG 473..679 364..578 177 25 Plus
pst-PE 682 CG8588-PE 473..679 364..578 177 25 Plus
pst-PF 707 CG8588-PF 498..704 364..578 177 25 Plus