Clone Sequence Records
BO17936.5prime Sequence
652 bp (649 high quality bases) assembled on 2006-10-13
> BO17936.5prime
GAAGTTATCAGTCGACATGGAAGACAATAACACGAGCAGCAGTGCGGGCG
GTGCGTCCATCAAACACGAGGATCCATCGGTGACACTCACAATAAGGCTG
ATTATGCAAGGAAAGGAGGTTGGTAGTATTATTGGTAAAAAGGGTGAAAT
TGTCAACAGATTTCGTGAAGAGTCTGGTGCCAAAATCAACATTTCGGATG
GCTCATGCCCGGAACGTATTGTGACTGTGTCTGGTACAACTAATGCAATC
TTTTCGGCATTCACGCTCATTACAAAGAAGTTCGAAGAGTGGTGCTCGCA
GTTCAATGATGTAGGCAAAGTTGGTAAAACTCAAATACCCATTCGATTGA
TTGTGCCCGCCAGTCAATGTGGATCGTTAATTGGCAAGAGTGGTTCAAAG
ATCAAGGAAATTCGTCAGACCACGGGCTGCTCCATCCAAGTGGCCAGTGA
AATGCTACCCAATTCCACAGAGCGGGCGGTTACCTTGAGCGGCAGCGCCG
AGCAGATCACCCAGTGCATCTATCAGATATGTCTTGTCATGTTGGAGTCC
CCGCCACGCGGTGCCACCATCCCGTACCGACCAAAACCACAGGTTACTGG
CCCCGTCATCCTGGCCAATGGACAGGCTTTCACCATCCAAGGAAACTACG
CG
BO17936.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7437-PD | 1620 | mub-RD | 1..636 | 17..652 | 3180 | 100 | Plus |
CG7437-PA | 1161 | mub-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
CG7437-PB | 1161 | mub-RB | 1..636 | 17..652 | 3180 | 100 | Plus |
CG7437-PC | 1095 | mub-RC | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mub-RN | 9527 | CG7437-RN | 841..1477 | 16..652 | 3185 | 100 | Plus |
mub-RL | 2968 | CG7437-RL | 900..1536 | 16..652 | 3185 | 100 | Plus |
mub-RH | 3690 | CG7437-RH | 953..1589 | 16..652 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21915260..21915424 | 383..547 | 825 | 100 | Plus |
3L | 28110227 | 3L | 21914891..21915009 | 171..289 | 595 | 100 | Plus |
3L | 28110227 | 3L | 21915534..21915640 | 546..652 | 535 | 100 | Plus |
3L | 28110227 | 3L | 21907821..21907921 | 16..116 | 505 | 100 | Plus |
3L | 28110227 | 3L | 21915100..21915200 | 288..388 | 490 | 99 | Plus |
3L | 28110227 | 3L | 21914774..21914832 | 114..172 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:37:44 has no hits.
BO17936.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:41 Download gff for
BO17936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7437-PC | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:10 Download gff for
BO17936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mub-RA | 841..1477 | 16..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:57 Download gff for
BO17936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mub-RH | 953..1589 | 16..652 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:57 Download gff for
BO17936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21907821..21907920 | 16..115 | 100 | -> | Plus |
3L | 21914776..21914832 | 116..172 | 100 | -> | Plus |
3L | 21914893..21915009 | 173..289 | 100 | -> | Plus |
3L | 21915102..21915195 | 290..383 | 100 | -> | Plus |
3L | 21915261..21915424 | 384..547 | 100 | -> | Plus |
3L | 21915536..21915640 | 548..652 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:10 Download gff for
BO17936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21908361..21908524 | 384..547 | 100 | -> | Plus |
arm_3L | 21900921..21901020 | 16..115 | 100 | -> | Plus |
arm_3L | 21907876..21907932 | 116..172 | 100 | -> | Plus |
arm_3L | 21907993..21908109 | 173..289 | 100 | -> | Plus |
arm_3L | 21908202..21908295 | 290..383 | 100 | -> | Plus |
arm_3L | 21908636..21908740 | 548..652 | 100 | | Plus |
BO17936.3prime Sequence
723 bp (592 high quality bases) assembled on 2006-10-13
> BO17936.3prime
ATGGTCTAGAAAGCTTGCGTGAATGGGTGTTTTAACAATTGCACTGGGCG
CAATGTAGTGATAACCAGGTATGGGCAGACCAGCAGTCTCCATTGATATT
CTCATATTAATTAAGTATTGGGCCAGGGCCACCGAGTCCGGATTGCCGCT
GATGGTGATGGTGCGGTCGGTATTGCCGCCCTCGCGCTCCTCGCAGTTGG
AGATCCGGATCATGGCGCCGGATATTTGGCGAATCTCGGCGATCTTGGTG
CCACCCTTGCCGATGATGCAGCCAATCAGGTCGTTTGAGACGGTCATCTC
GTGCTGCTGCTGCTGGGCTCGGTTCGCGGGATTCGCTGTACGCAGTTGCG
ACCCGGCCAGTGCAGCCAAGGCTGCTGTGTGGTTGATGCCCCCAGTGCTG
GCCGGATTCATCCCAGCCAGGCCCAAGGCGGCCAGACTGGCCAGCGGGTT
CTTGGCCACCTCTTGTGTGGGCACCGCGTAGTTTCCTTGGATGGTGAAAG
CCTGTCCATTGGCCAGGATGACGGGGCCAGTAACCTGTGGTTTTGGTCGG
TACGGGATGGTGGCACCGCGTGGCGGGGACTCCAACATGACAAGACATAT
CTGATAGATGCACTGGGTGATCTGCTCGGCGCTGCCGCTCAAGGTAACCG
CCCGCTCTGTGGAATTGGGTAGCATTTCACTGGCCACTTGGATGGAGCAG
CCCGTGGTCTGACGAATTTCCTT
BO17936.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7437-PC | 1095 | mub-RC | 388..1092 | 723..19 | 3525 | 100 | Minus |
CG7437-PD | 1620 | mub-RD | 388..1010 | 723..101 | 3115 | 100 | Minus |
CG7437-PA | 1161 | mub-RA | 800..1158 | 377..19 | 1795 | 100 | Minus |
CG7437-PB | 1161 | mub-RB | 800..1158 | 377..19 | 1795 | 100 | Minus |
CG7437-PA | 1161 | mub-RA | 388..736 | 723..375 | 1745 | 100 | Minus |
CG7437-PB | 1161 | mub-RB | 388..736 | 723..375 | 1745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mub-RC | 9374 | CG7437-RC | 1229..1933 | 723..19 | 3525 | 100 | Minus |
mub-RG | 3468 | CG7437-RG | 1329..2030 | 723..19 | 3470 | 99.6 | Minus |
mub-RM | 9471 | CG7437-RM | 1329..2030 | 723..19 | 3470 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21921051..21921327 | 377..101 | 1385 | 100 | Minus |
3L | 28110227 | 3L | 21915281..21915424 | 723..580 | 720 | 100 | Minus |
3L | 28110227 | 3L | 21915534..21915657 | 581..458 | 620 | 100 | Minus |
3L | 28110227 | 3L | 21920901..21920987 | 461..375 | 435 | 100 | Minus |
3L | 28110227 | 3L | 21925178..21925261 | 102..19 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:26:42 has no hits.
BO17936.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:40 Download gff for
BO17936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7437-PC | 388..1095 | 15..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:31 Download gff for
BO17936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mub-RC | 1229..1939 | 11..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:56 Download gff for
BO17936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mub-RC | 1229..1939 | 11..723 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:56 Download gff for
BO17936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21915281..21915424 | 580..723 | 100 | -> | Minus |
3L | 21915536..21915655 | 460..579 | 100 | -> | Minus |
3L | 21920903..21920987 | 375..459 | 100 | -> | Minus |
3L | 21921054..21921327 | 101..374 | 100 | -> | Minus |
3L | 21925180..21925267 | 11..100 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:31 Download gff for
BO17936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21908381..21908524 | 580..723 | 100 | -> | Minus |
arm_3L | 21908636..21908755 | 460..579 | 100 | -> | Minus |
arm_3L | 21914003..21914087 | 375..459 | 100 | -> | Minus |
arm_3L | 21914154..21914427 | 101..374 | 100 | -> | Minus |
arm_3L | 21918280..21918367 | 11..100 | 95 | | Minus |
BO17936.complete Sequence
1126 bp assembled on 2006-10-11
GenBank Submission: FJ634259
> BO17936.complete
GAAGTTATCAGTCGACATGGAAGACAATAACACGAGCAGCAGTGCGGGCG
GTGCGTCCATCAAACACGAGGATCCATCGGTGACACTCACAATAAGGCTG
ATTATGCAAGGAAAGGAGGTTGGTAGTATTATTGGTAAAAAGGGTGAAAT
TGTCAACAGATTTCGTGAAGAGTCTGGTGCCAAAATCAACATTTCGGATG
GCTCATGCCCGGAACGTATTGTGACTGTGTCTGGTACAACTAATGCAATC
TTTTCGGCATTCACGCTCATTACAAAGAAGTTCGAAGAGTGGTGCTCGCA
GTTCAATGATGTAGGCAAAGTTGGTAAAACTCAAATACCCATTCGATTGA
TTGTGCCCGCCAGTCAATGTGGATCGTTAATTGGCAAGAGTGGTTCAAAG
ATCAAGGAAATTCGTCAGACCACGGGCTGCTCCATCCAAGTGGCCAGTGA
AATGCTACCCAATTCCACAGAGCGGGCGGTTACCTTGAGCGGCAGCGCCG
AGCAGATCACCCAGTGCATCTATCAGATATGTCTTGTCATGTTGGAGTCC
CCGCCACGCGGTGCCACCATCCCGTACCGACCAAAACCACAGGTTACTGG
CCCCGTCATCCTGGCCAATGGACAGGCTTTCACCATCCAAGGAAACTACG
CGGTGCCCACACAAGAGGTGGCCAAGAACCCGCTGGCCAGTCTGGCCGCC
TTGGGCCTGGCTGGGATGAATCCGGCCAGCACTGGGGGCATCAACCACAC
AGCAGCCTTGGCTGCACTGGCCGGGTCGCAACTGCGTACAGCGAATCCCG
CGAACCGAGCCCAGCAGCAGCAGCACGAGATGACCGTCTCAAACGACCTG
ATTGGCTGCATCATCGGCAAGGGTGGCACCAAGATCGCCGAGATTCGCCA
AATATCCGGCGCCATGATCCGGATCTCCAACTGCGAGGAGCGCGAGGGCG
GCAATACCGACCGCACCATCACCATCAGCGGCAATCCGGACTCGGTGGCC
CTGGCCCAATACTTAATTAATATGAGAATATCAATGGAGACTGCTGGTCT
GCCCATACCTGGTTATCACTACATTGCGCCCAGTGCAATTGTTAAAACAC
CCATTCACGCAAGCTTTCTAGACCAT
BO17936.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mub-RC | 1095 | CG7437-PC | 1..1092 | 17..1108 | 5460 | 100 | Plus |
mub-RL | 1107 | CG7437-PL | 1..1104 | 17..1108 | 5305 | 98.9 | Plus |
mub-RG | 1080 | CG7437-PG | 1..1077 | 17..1108 | 5165 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mub-RC | 9374 | CG7437-RC | 841..1933 | 16..1108 | 5465 | 100 | Plus |
mub-RL | 2968 | CG7437-RL | 900..2004 | 16..1108 | 5310 | 98.9 | Plus |
mub-RG | 3468 | CG7437-RG | 953..2030 | 16..1108 | 5170 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21921051..21921327 | 750..1026 | 1385 | 100 | Plus |
3L | 28110227 | 3L | 21915260..21915424 | 383..547 | 825 | 100 | Plus |
3L | 28110227 | 3L | 21915534..21915657 | 546..669 | 620 | 100 | Plus |
3L | 28110227 | 3L | 21914891..21915009 | 171..289 | 595 | 100 | Plus |
3L | 28110227 | 3L | 21907821..21907921 | 16..116 | 505 | 100 | Plus |
3L | 28110227 | 3L | 21915100..21915200 | 288..388 | 490 | 99 | Plus |
3L | 28110227 | 3L | 21920901..21920987 | 666..752 | 435 | 100 | Plus |
3L | 28110227 | 3L | 21925178..21925261 | 1025..1108 | 420 | 100 | Plus |
3L | 28110227 | 3L | 21914774..21914832 | 114..172 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:19:36 has no hits.
BO17936.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:23 Download gff for
BO17936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mub-RC | 1..1095 | 17..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:33 Download gff for
BO17936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mub-RC | 809..1900 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:00 Download gff for
BO17936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mub-RC | 842..1933 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:24 Download gff for
BO17936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mub-RC | 808..1906 | 16..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:29 Download gff for
BO17936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mub-RC | 842..1933 | 17..1110 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:29 Download gff for
BO17936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21915536..21915655 | 548..667 | 100 | -> | Plus |
3L | 21920903..21920987 | 668..752 | 100 | -> | Plus |
3L | 21921054..21921327 | 753..1026 | 100 | -> | Plus |
3L | 21925180..21925261 | 1027..1110 | 97 | | Plus |
3L | 21907822..21907920 | 17..115 | 100 | -> | Plus |
3L | 21914776..21914832 | 116..172 | 100 | -> | Plus |
3L | 21914893..21915009 | 173..289 | 100 | -> | Plus |
3L | 21915102..21915195 | 290..383 | 100 | -> | Plus |
3L | 21915261..21915424 | 384..547 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:00 Download gff for
BO17936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21900922..21901020 | 17..115 | 100 | -> | Plus |
arm_3L | 21907876..21907932 | 116..172 | 100 | -> | Plus |
arm_3L | 21907993..21908109 | 173..289 | 100 | -> | Plus |
arm_3L | 21908202..21908295 | 290..383 | 100 | -> | Plus |
arm_3L | 21908361..21908524 | 384..547 | 100 | -> | Plus |
arm_3L | 21908636..21908755 | 548..667 | 100 | -> | Plus |
arm_3L | 21914003..21914087 | 668..752 | 100 | -> | Plus |
arm_3L | 21914154..21914427 | 753..1026 | 100 | -> | Plus |
arm_3L | 21918280..21918361 | 1027..1110 | 97 | | Plus |
BO17936.pep Sequence
Translation from 16 to 1126
> BO17936.pep
MEDNNTSSSAGGASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFR
EESGAKINISDGSCPERIVTVSGTTNAIFSAFTLITKKFEEWCSQFNDVG
KVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNS
TERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKPQVTGPVILA
NGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGGINHTAALAA
LAGSQLRTANPANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAM
IRISNCEEREGGNTDRTITISGNPDSVALAQYLINMRISMETAGLPIPGY
HYIAPSAIVKTPIHASFLDH
BO17936.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mub-PC | 364 | CG7437-PC | 1..364 | 1..364 | 1846 | 100 | Plus |
mub-PL | 368 | CG7437-PL | 1..368 | 1..364 | 1831 | 98.9 | Plus |
mub-PA | 386 | CG7437-PA | 1..386 | 1..364 | 1813 | 94.3 | Plus |
mub-PG | 359 | CG7437-PG | 1..359 | 1..364 | 1786 | 98.6 | Plus |
mub-PM | 359 | CG7437-PM | 1..359 | 1..364 | 1786 | 98.6 | Plus |