Clone BO17936 Report

Search the DGRC for BO17936

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:36
Vector:pDNR-Dual
Associated Gene/Transcriptmub-RC
Protein status:BO17936.pep: validated full length
Sequenced Size:1126

Clone Sequence Records

BO17936.5prime Sequence

652 bp (649 high quality bases) assembled on 2006-10-13

> BO17936.5prime
GAAGTTATCAGTCGACATGGAAGACAATAACACGAGCAGCAGTGCGGGCG
GTGCGTCCATCAAACACGAGGATCCATCGGTGACACTCACAATAAGGCTG
ATTATGCAAGGAAAGGAGGTTGGTAGTATTATTGGTAAAAAGGGTGAAAT
TGTCAACAGATTTCGTGAAGAGTCTGGTGCCAAAATCAACATTTCGGATG
GCTCATGCCCGGAACGTATTGTGACTGTGTCTGGTACAACTAATGCAATC
TTTTCGGCATTCACGCTCATTACAAAGAAGTTCGAAGAGTGGTGCTCGCA
GTTCAATGATGTAGGCAAAGTTGGTAAAACTCAAATACCCATTCGATTGA
TTGTGCCCGCCAGTCAATGTGGATCGTTAATTGGCAAGAGTGGTTCAAAG
ATCAAGGAAATTCGTCAGACCACGGGCTGCTCCATCCAAGTGGCCAGTGA
AATGCTACCCAATTCCACAGAGCGGGCGGTTACCTTGAGCGGCAGCGCCG
AGCAGATCACCCAGTGCATCTATCAGATATGTCTTGTCATGTTGGAGTCC
CCGCCACGCGGTGCCACCATCCCGTACCGACCAAAACCACAGGTTACTGG
CCCCGTCATCCTGGCCAATGGACAGGCTTTCACCATCCAAGGAAACTACG
CG

BO17936.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7437-PD 1620 mub-RD 1..636 17..652 3180 100 Plus
CG7437-PA 1161 mub-RA 1..636 17..652 3180 100 Plus
CG7437-PB 1161 mub-RB 1..636 17..652 3180 100 Plus
CG7437-PC 1095 mub-RC 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
mub-RN 9527 CG7437-RN 841..1477 16..652 3185 100 Plus
mub-RL 2968 CG7437-RL 900..1536 16..652 3185 100 Plus
mub-RH 3690 CG7437-RH 953..1589 16..652 3185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21915260..21915424 383..547 825 100 Plus
3L 28110227 3L 21914891..21915009 171..289 595 100 Plus
3L 28110227 3L 21915534..21915640 546..652 535 100 Plus
3L 28110227 3L 21907821..21907921 16..116 505 100 Plus
3L 28110227 3L 21915100..21915200 288..388 490 99 Plus
3L 28110227 3L 21914774..21914832 114..172 295 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:37:44 has no hits.

BO17936.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:41 Download gff for BO17936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7437-PC 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:10 Download gff for BO17936.5prime
Subject Subject Range Query Range Percent Splice Strand
mub-RA 841..1477 16..652 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:57 Download gff for BO17936.5prime
Subject Subject Range Query Range Percent Splice Strand
mub-RH 953..1589 16..652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:57 Download gff for BO17936.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21907821..21907920 16..115 100 -> Plus
3L 21914776..21914832 116..172 100 -> Plus
3L 21914893..21915009 173..289 100 -> Plus
3L 21915102..21915195 290..383 100 -> Plus
3L 21915261..21915424 384..547 100 -> Plus
3L 21915536..21915640 548..652 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:10 Download gff for BO17936.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21908361..21908524 384..547 100 -> Plus
arm_3L 21900921..21901020 16..115 100 -> Plus
arm_3L 21907876..21907932 116..172 100 -> Plus
arm_3L 21907993..21908109 173..289 100 -> Plus
arm_3L 21908202..21908295 290..383 100 -> Plus
arm_3L 21908636..21908740 548..652 100   Plus

BO17936.3prime Sequence

723 bp (592 high quality bases) assembled on 2006-10-13

> BO17936.3prime
ATGGTCTAGAAAGCTTGCGTGAATGGGTGTTTTAACAATTGCACTGGGCG
CAATGTAGTGATAACCAGGTATGGGCAGACCAGCAGTCTCCATTGATATT
CTCATATTAATTAAGTATTGGGCCAGGGCCACCGAGTCCGGATTGCCGCT
GATGGTGATGGTGCGGTCGGTATTGCCGCCCTCGCGCTCCTCGCAGTTGG
AGATCCGGATCATGGCGCCGGATATTTGGCGAATCTCGGCGATCTTGGTG
CCACCCTTGCCGATGATGCAGCCAATCAGGTCGTTTGAGACGGTCATCTC
GTGCTGCTGCTGCTGGGCTCGGTTCGCGGGATTCGCTGTACGCAGTTGCG
ACCCGGCCAGTGCAGCCAAGGCTGCTGTGTGGTTGATGCCCCCAGTGCTG
GCCGGATTCATCCCAGCCAGGCCCAAGGCGGCCAGACTGGCCAGCGGGTT
CTTGGCCACCTCTTGTGTGGGCACCGCGTAGTTTCCTTGGATGGTGAAAG
CCTGTCCATTGGCCAGGATGACGGGGCCAGTAACCTGTGGTTTTGGTCGG
TACGGGATGGTGGCACCGCGTGGCGGGGACTCCAACATGACAAGACATAT
CTGATAGATGCACTGGGTGATCTGCTCGGCGCTGCCGCTCAAGGTAACCG
CCCGCTCTGTGGAATTGGGTAGCATTTCACTGGCCACTTGGATGGAGCAG
CCCGTGGTCTGACGAATTTCCTT

BO17936.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7437-PC 1095 mub-RC 388..1092 723..19 3525 100 Minus
CG7437-PD 1620 mub-RD 388..1010 723..101 3115 100 Minus
CG7437-PA 1161 mub-RA 800..1158 377..19 1795 100 Minus
CG7437-PB 1161 mub-RB 800..1158 377..19 1795 100 Minus
CG7437-PA 1161 mub-RA 388..736 723..375 1745 100 Minus
CG7437-PB 1161 mub-RB 388..736 723..375 1745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
mub-RC 9374 CG7437-RC 1229..1933 723..19 3525 100 Minus
mub-RG 3468 CG7437-RG 1329..2030 723..19 3470 99.6 Minus
mub-RM 9471 CG7437-RM 1329..2030 723..19 3470 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21921051..21921327 377..101 1385 100 Minus
3L 28110227 3L 21915281..21915424 723..580 720 100 Minus
3L 28110227 3L 21915534..21915657 581..458 620 100 Minus
3L 28110227 3L 21920901..21920987 461..375 435 100 Minus
3L 28110227 3L 21925178..21925261 102..19 420 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:26:42 has no hits.

BO17936.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:40 Download gff for BO17936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7437-PC 388..1095 15..723 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:31 Download gff for BO17936.3prime
Subject Subject Range Query Range Percent Splice Strand
mub-RC 1229..1939 11..723 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:56 Download gff for BO17936.3prime
Subject Subject Range Query Range Percent Splice Strand
mub-RC 1229..1939 11..723 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:56 Download gff for BO17936.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21915281..21915424 580..723 100 -> Minus
3L 21915536..21915655 460..579 100 -> Minus
3L 21920903..21920987 375..459 100 -> Minus
3L 21921054..21921327 101..374 100 -> Minus
3L 21925180..21925267 11..100 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:31 Download gff for BO17936.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21908381..21908524 580..723 100 -> Minus
arm_3L 21908636..21908755 460..579 100 -> Minus
arm_3L 21914003..21914087 375..459 100 -> Minus
arm_3L 21914154..21914427 101..374 100 -> Minus
arm_3L 21918280..21918367 11..100 95   Minus

BO17936.complete Sequence

1126 bp assembled on 2006-10-11

GenBank Submission: FJ634259

> BO17936.complete
GAAGTTATCAGTCGACATGGAAGACAATAACACGAGCAGCAGTGCGGGCG
GTGCGTCCATCAAACACGAGGATCCATCGGTGACACTCACAATAAGGCTG
ATTATGCAAGGAAAGGAGGTTGGTAGTATTATTGGTAAAAAGGGTGAAAT
TGTCAACAGATTTCGTGAAGAGTCTGGTGCCAAAATCAACATTTCGGATG
GCTCATGCCCGGAACGTATTGTGACTGTGTCTGGTACAACTAATGCAATC
TTTTCGGCATTCACGCTCATTACAAAGAAGTTCGAAGAGTGGTGCTCGCA
GTTCAATGATGTAGGCAAAGTTGGTAAAACTCAAATACCCATTCGATTGA
TTGTGCCCGCCAGTCAATGTGGATCGTTAATTGGCAAGAGTGGTTCAAAG
ATCAAGGAAATTCGTCAGACCACGGGCTGCTCCATCCAAGTGGCCAGTGA
AATGCTACCCAATTCCACAGAGCGGGCGGTTACCTTGAGCGGCAGCGCCG
AGCAGATCACCCAGTGCATCTATCAGATATGTCTTGTCATGTTGGAGTCC
CCGCCACGCGGTGCCACCATCCCGTACCGACCAAAACCACAGGTTACTGG
CCCCGTCATCCTGGCCAATGGACAGGCTTTCACCATCCAAGGAAACTACG
CGGTGCCCACACAAGAGGTGGCCAAGAACCCGCTGGCCAGTCTGGCCGCC
TTGGGCCTGGCTGGGATGAATCCGGCCAGCACTGGGGGCATCAACCACAC
AGCAGCCTTGGCTGCACTGGCCGGGTCGCAACTGCGTACAGCGAATCCCG
CGAACCGAGCCCAGCAGCAGCAGCACGAGATGACCGTCTCAAACGACCTG
ATTGGCTGCATCATCGGCAAGGGTGGCACCAAGATCGCCGAGATTCGCCA
AATATCCGGCGCCATGATCCGGATCTCCAACTGCGAGGAGCGCGAGGGCG
GCAATACCGACCGCACCATCACCATCAGCGGCAATCCGGACTCGGTGGCC
CTGGCCCAATACTTAATTAATATGAGAATATCAATGGAGACTGCTGGTCT
GCCCATACCTGGTTATCACTACATTGCGCCCAGTGCAATTGTTAAAACAC
CCATTCACGCAAGCTTTCTAGACCAT

BO17936.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
mub-RC 1095 CG7437-PC 1..1092 17..1108 5460 100 Plus
mub-RL 1107 CG7437-PL 1..1104 17..1108 5305 98.9 Plus
mub-RG 1080 CG7437-PG 1..1077 17..1108 5165 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
mub-RC 9374 CG7437-RC 841..1933 16..1108 5465 100 Plus
mub-RL 2968 CG7437-RL 900..2004 16..1108 5310 98.9 Plus
mub-RG 3468 CG7437-RG 953..2030 16..1108 5170 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21921051..21921327 750..1026 1385 100 Plus
3L 28110227 3L 21915260..21915424 383..547 825 100 Plus
3L 28110227 3L 21915534..21915657 546..669 620 100 Plus
3L 28110227 3L 21914891..21915009 171..289 595 100 Plus
3L 28110227 3L 21907821..21907921 16..116 505 100 Plus
3L 28110227 3L 21915100..21915200 288..388 490 99 Plus
3L 28110227 3L 21920901..21920987 666..752 435 100 Plus
3L 28110227 3L 21925178..21925261 1025..1108 420 100 Plus
3L 28110227 3L 21914774..21914832 114..172 295 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:19:36 has no hits.

BO17936.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:23 Download gff for BO17936.complete
Subject Subject Range Query Range Percent Splice Strand
mub-RC 1..1095 17..1112 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:33 Download gff for BO17936.complete
Subject Subject Range Query Range Percent Splice Strand
mub-RC 809..1900 17..1110 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:00 Download gff for BO17936.complete
Subject Subject Range Query Range Percent Splice Strand
mub-RC 842..1933 17..1110 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:24 Download gff for BO17936.complete
Subject Subject Range Query Range Percent Splice Strand
mub-RC 808..1906 16..1116 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:29 Download gff for BO17936.complete
Subject Subject Range Query Range Percent Splice Strand
mub-RC 842..1933 17..1110 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:29 Download gff for BO17936.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21915536..21915655 548..667 100 -> Plus
3L 21920903..21920987 668..752 100 -> Plus
3L 21921054..21921327 753..1026 100 -> Plus
3L 21925180..21925261 1027..1110 97   Plus
3L 21907822..21907920 17..115 100 -> Plus
3L 21914776..21914832 116..172 100 -> Plus
3L 21914893..21915009 173..289 100 -> Plus
3L 21915102..21915195 290..383 100 -> Plus
3L 21915261..21915424 384..547 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:00 Download gff for BO17936.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21900922..21901020 17..115 100 -> Plus
arm_3L 21907876..21907932 116..172 100 -> Plus
arm_3L 21907993..21908109 173..289 100 -> Plus
arm_3L 21908202..21908295 290..383 100 -> Plus
arm_3L 21908361..21908524 384..547 100 -> Plus
arm_3L 21908636..21908755 548..667 100 -> Plus
arm_3L 21914003..21914087 668..752 100 -> Plus
arm_3L 21914154..21914427 753..1026 100 -> Plus
arm_3L 21918280..21918361 1027..1110 97   Plus

BO17936.pep Sequence

Translation from 16 to 1126

> BO17936.pep
MEDNNTSSSAGGASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFR
EESGAKINISDGSCPERIVTVSGTTNAIFSAFTLITKKFEEWCSQFNDVG
KVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNS
TERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKPQVTGPVILA
NGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGGINHTAALAA
LAGSQLRTANPANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAM
IRISNCEEREGGNTDRTITISGNPDSVALAQYLINMRISMETAGLPIPGY
HYIAPSAIVKTPIHASFLDH

BO17936.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
mub-PC 364 CG7437-PC 1..364 1..364 1846 100 Plus
mub-PL 368 CG7437-PL 1..368 1..364 1831 98.9 Plus
mub-PA 386 CG7437-PA 1..386 1..364 1813 94.3 Plus
mub-PG 359 CG7437-PG 1..359 1..364 1786 98.6 Plus
mub-PM 359 CG7437-PM 1..359 1..364 1786 98.6 Plus