Clone Sequence Records
BO17946.3prime Sequence
789 bp (722 high quality bases) assembled on 2006-10-13
> BO17946.3prime
ATGGTCTAGAAAGCTTGCTTTGCTATTGACTAAGTTCAGGAATTCCTCAC
GGGTCTTGGGATCGTCTCGGAACACGCCCAGCATAGTTGAGGTAACAGTT
TTGCTGTTGATCTTCTGCACGCCACGCATCACCATGCACATGTGGACTCC
CTCTACGACCACTGCTACTCCAGCGGGTTGCACGGCCTGAGTCACGGCCA
CTGCGATCTGCTTAGTTAAGCGCTCCTGGACTTGCAGGCGACGCGAAAAT
ATTTCGACAATGCGTGCCAATTTACTGAGTCCGAGAATCTTGTTGCACGG
CAAATAACCGATGGAAACTTTGCCGTAGAAGGGCACCAGATGATGCTCGC
ACATGGAGAACATTTCAATATCCTTGACCACCACCATTTCGTCATGATCC
TCGTCGAAAACGGCGCCATTGAGAACATCCTCGAGACTCTGGTCGTAGCC
CTTGGTGAAGTACAGCATGGCCTTGGCTGCCCGCTCCGGCGTCTTGATCA
GTCCCTGGCGATCGGGATTCTCGCCCAGGCCGCCCAAGAGTAGACGATAC
GAGCGTGCCATGTCCGGAAGGAGGGCCTCTCGCGTCGGCGGCTTGTGGTC
CAGCTCCAGGTCGTGGTGGAACGTGCACTTCTCGTGGCCTGGCGTTGTCG
ATGTACGCGGTGTCAGTGGTGTTTTCGGTTGTGTACCATCACTATCCGGA
CTGCTGCCGTTGGTCTTCAGGATGAAGCGGGGTCTCTGGTTGCCGGCCCA
CGGGACGAGAGCAGGAGCTGGCGCCACCTCCTCGACGGG
BO17946.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9441-PA | 975 | Pu-RA | 202..972 | 789..19 | 3805 | 99.7 | Minus |
CG9441-PC | 927 | Pu-RC | 304..924 | 639..19 | 3105 | 100 | Minus |
CG9441-PB | 822 | Pu-RB | 199..819 | 639..19 | 3105 | 100 | Minus |
CG9441-PC | 927 | Pu-RC | 202..305 | 789..686 | 470 | 98 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RA | 1793 | CG9441-RA | 377..1147 | 789..19 | 3825 | 99.7 | Minus |
Pu-RC | 1744 | CG9441-RC | 478..1098 | 639..19 | 3105 | 100 | Minus |
Pu-RB | 1625 | CG9441-RB | 359..979 | 639..19 | 3105 | 100 | Minus |
Pu-RC | 1744 | CG9441-RC | 376..479 | 789..686 | 490 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21179935..21180147 | 641..429 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 21181419..21181585 | 429..263 | 835 | 100 | Minus |
2R | 25286936 | 2R | 21179494..21179645 | 789..638 | 730 | 98.7 | Minus |
2R | 25286936 | 2R | 21181836..21181962 | 145..19 | 635 | 100 | Minus |
2R | 25286936 | 2R | 21181644..21181761 | 263..146 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:10:56 has no hits.
BO17946.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:48 Download gff for
BO17946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9441-PA | 202..975 | 18..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:29 Download gff for
BO17946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 377..1147 | 19..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:08 Download gff for
BO17946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 377..1147 | 19..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:08 Download gff for
BO17946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21181420..21181585 | 263..428 | 100 | -> | Minus |
2R | 21181645..21181761 | 146..262 | 100 | -> | Minus |
2R | 21181836..21181962 | 19..145 | 100 | | Minus |
2R | 21179938..21180147 | 429..638 | 100 | -> | Minus |
2R | 21179494..21179644 | 639..789 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:29 Download gff for
BO17946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17066999..17067149 | 639..789 | 98 | -> | Minus |
arm_2R | 17067443..17067652 | 429..638 | 100 | -> | Minus |
arm_2R | 17068925..17069090 | 263..428 | 100 | -> | Minus |
arm_2R | 17069150..17069266 | 146..262 | 100 | -> | Minus |
arm_2R | 17069341..17069467 | 19..145 | 100 | | Minus |
BO17946.5prime Sequence
683 bp (682 high quality bases) assembled on 2006-10-13
> BO17946.5prime
GAAGTTATCAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTG
CCAGCGAGCTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCAC
ATCCTTTCGCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTC
GGGCACCTCCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCA
CTGCCATTGCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTC
GTCCCGTTGGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGG
CAGCAGTCCGGATAGTGATGGTACACAACCGAAAACACCACTGACACCGC
GTACATCGACAACGCCAGGCCACGAGAAGTGCACGTTCCACCACGACCTG
GAGCTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGC
ACGCTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCC
AGGGACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTC
ACCAAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTT
CGACGAGGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCT
CCATGTGCGAGCATCATCTGGTGCCCTTCTACG
BO17946.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9441-PA | 975 | Pu-RA | 1..667 | 17..683 | 3335 | 100 | Plus |
CG9441-PC | 927 | Pu-RC | 304..619 | 368..683 | 1580 | 100 | Plus |
CG9441-PB | 822 | Pu-RB | 199..514 | 368..683 | 1580 | 100 | Plus |
CG9441-PC | 927 | Pu-RC | 1..305 | 17..321 | 1525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RA | 1793 | CG9441-RA | 175..842 | 16..683 | 3340 | 100 | Plus |
Pu-RC | 1744 | CG9441-RC | 478..793 | 368..683 | 1580 | 100 | Plus |
Pu-RB | 1625 | CG9441-RB | 359..674 | 368..683 | 1580 | 100 | Plus |
Pu-RC | 1744 | CG9441-RC | 174..479 | 16..321 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21179292..21179645 | 16..369 | 1770 | 100 | Plus |
2R | 25286936 | 2R | 21179935..21180147 | 366..578 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 21181419..21181524 | 578..683 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:11:53 has no hits.
BO17946.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:48 Download gff for
BO17946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9441-PA | 1..667 | 17..683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:34 Download gff for
BO17946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 169..842 | 9..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:18 Download gff for
BO17946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 169..842 | 9..683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:18 Download gff for
BO17946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21179286..21179644 | 9..368 | 99 | -> | Plus |
2R | 21179938..21180147 | 369..578 | 100 | -> | Plus |
2R | 21181420..21181524 | 579..683 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:34 Download gff for
BO17946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17066791..17067149 | 9..368 | 99 | -> | Plus |
arm_2R | 17067443..17067652 | 369..578 | 100 | -> | Plus |
arm_2R | 17068925..17069029 | 579..683 | 100 | | Plus |
BO17946.complete Sequence
1006 bp assembled on 2006-10-11
GenBank Submission: FJ634261
> BO17946.complete
GAAGTTATCAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTG
CCAGCGAGCTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCAC
ATCCTTTCGCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTC
GGGCACCTCCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCA
CTGCCATTGCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTC
GTCCCGTTGGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGG
CAGCAGTCCGGATAGTGATGGTACACAACCGAAAACACCACTGACACCGC
GTACATCGACAACGCCAGGCCACGAGAAGTGCACGTTCCACCACGACCTG
GAGCTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGC
ACGCTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCC
AGGGACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTC
ACCAAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTT
CGACGAGGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCT
CCATGTGCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGT
TATTTGCCGTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGT
CGAAATATTTTCGCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGA
TCGCAGTGGCCGTGACTCAGGCCGTGCAACCCGCTGGAGTAGCAGTGGTC
GTAGAGGGAGTCCACATGTGCATGGTGATGCGTGGCGTGCAGAAGATCAA
CAGCAAAACTGTTACCTCAACTATGCTGGGCGTGTTCCGAGACGATCCCA
AGACCCGTGAGGAATTCCTGAACTTAGTCAATAGCAAAGCAAGCTTTCTA
GACCAT
BO17946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RA | 975 | CG9441-PA | 1..972 | 17..988 | 4860 | 100 | Plus |
Pu-RC | 927 | CG9441-PC | 304..924 | 368..988 | 3105 | 100 | Plus |
Pu-RB | 822 | CG9441-PB | 199..819 | 368..988 | 3105 | 100 | Plus |
Pu-RC | 927 | CG9441-PC | 1..305 | 17..321 | 1525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RA | 1793 | CG9441-RA | 175..1147 | 16..988 | 4865 | 100 | Plus |
Pu-RC | 1744 | CG9441-RC | 478..1098 | 368..988 | 3105 | 100 | Plus |
Pu-RB | 1625 | CG9441-RB | 359..979 | 368..988 | 3105 | 100 | Plus |
Pu-RC | 1744 | CG9441-RC | 174..479 | 16..321 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21179292..21179645 | 16..369 | 1770 | 100 | Plus |
2R | 25286936 | 2R | 21179935..21180147 | 366..578 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 21181419..21181585 | 578..744 | 835 | 100 | Plus |
2R | 25286936 | 2R | 21181836..21181962 | 862..988 | 635 | 100 | Plus |
2R | 25286936 | 2R | 21181644..21181761 | 744..861 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:07:57 has no hits.
BO17946.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:24 Download gff for
BO17946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 1..975 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:57 Download gff for
BO17946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 168..1146 | 9..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:11 Download gff for
BO17946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 176..1147 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:25 Download gff for
BO17946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 168..1146 | 9..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:36 Download gff for
BO17946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RA | 176..1147 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:36 Download gff for
BO17946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21179293..21179644 | 17..368 | 100 | -> | Plus |
2R | 21179938..21180147 | 369..578 | 100 | -> | Plus |
2R | 21181420..21181585 | 579..744 | 100 | -> | Plus |
2R | 21181645..21181761 | 745..861 | 100 | -> | Plus |
2R | 21181836..21181962 | 862..990 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:11 Download gff for
BO17946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17069341..17069467 | 862..990 | 98 | | Plus |
arm_2R | 17066798..17067149 | 17..368 | 100 | -> | Plus |
arm_2R | 17067443..17067652 | 369..578 | 100 | -> | Plus |
arm_2R | 17068925..17069090 | 579..744 | 100 | -> | Plus |
arm_2R | 17069150..17069266 | 745..861 | 100 | -> | Plus |
BO17946.pep Sequence
Translation from 16 to 1006
> BO17946.pep
MSFTRQLSEMSASELNDAIDDTNFPQAHILSRGRNNSVCSTSSTSGTSSL
ADRQQNQAEEATAIAGTPVEEVAPAPALVPLAGNQRPRLILKTNGSSPDS
DGTQPKTPLTPRTSTTPGHEKCTFHHDLELDHKPPTREALLPDMARSYRL
LLGGLGENPDRQGLIKTPERAAKAMLYFTKGYDQSLEDVLNGAVFDEDHD
EMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCNKILGLSKLARIVEIFSR
RLQVQERLTKQIAVAVTQAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVT
STMLGVFRDDPKTREEFLNLVNSKASFLDH
BO17946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-PA | 324 | CG9441-PA | 1..324 | 1..324 | 1660 | 100 | Plus |
Pu-PC | 308 | CG9441-PC | 1..308 | 1..324 | 1546 | 95.1 | Plus |
Pu-PB | 273 | CG9441-PB | 63..273 | 114..324 | 1071 | 98.6 | Plus |