Clone BO17946 Report

Search the DGRC for BO17946

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptPu-RA
Protein status:BO17946.pep: validated full length
Sequenced Size:1006

Clone Sequence Records

BO17946.3prime Sequence

789 bp (722 high quality bases) assembled on 2006-10-13

> BO17946.3prime
ATGGTCTAGAAAGCTTGCTTTGCTATTGACTAAGTTCAGGAATTCCTCAC
GGGTCTTGGGATCGTCTCGGAACACGCCCAGCATAGTTGAGGTAACAGTT
TTGCTGTTGATCTTCTGCACGCCACGCATCACCATGCACATGTGGACTCC
CTCTACGACCACTGCTACTCCAGCGGGTTGCACGGCCTGAGTCACGGCCA
CTGCGATCTGCTTAGTTAAGCGCTCCTGGACTTGCAGGCGACGCGAAAAT
ATTTCGACAATGCGTGCCAATTTACTGAGTCCGAGAATCTTGTTGCACGG
CAAATAACCGATGGAAACTTTGCCGTAGAAGGGCACCAGATGATGCTCGC
ACATGGAGAACATTTCAATATCCTTGACCACCACCATTTCGTCATGATCC
TCGTCGAAAACGGCGCCATTGAGAACATCCTCGAGACTCTGGTCGTAGCC
CTTGGTGAAGTACAGCATGGCCTTGGCTGCCCGCTCCGGCGTCTTGATCA
GTCCCTGGCGATCGGGATTCTCGCCCAGGCCGCCCAAGAGTAGACGATAC
GAGCGTGCCATGTCCGGAAGGAGGGCCTCTCGCGTCGGCGGCTTGTGGTC
CAGCTCCAGGTCGTGGTGGAACGTGCACTTCTCGTGGCCTGGCGTTGTCG
ATGTACGCGGTGTCAGTGGTGTTTTCGGTTGTGTACCATCACTATCCGGA
CTGCTGCCGTTGGTCTTCAGGATGAAGCGGGGTCTCTGGTTGCCGGCCCA
CGGGACGAGAGCAGGAGCTGGCGCCACCTCCTCGACGGG

BO17946.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9441-PA 975 Pu-RA 202..972 789..19 3805 99.7 Minus
CG9441-PC 927 Pu-RC 304..924 639..19 3105 100 Minus
CG9441-PB 822 Pu-RB 199..819 639..19 3105 100 Minus
CG9441-PC 927 Pu-RC 202..305 789..686 470 98 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-RA 1793 CG9441-RA 377..1147 789..19 3825 99.7 Minus
Pu-RC 1744 CG9441-RC 478..1098 639..19 3105 100 Minus
Pu-RB 1625 CG9441-RB 359..979 639..19 3105 100 Minus
Pu-RC 1744 CG9441-RC 376..479 789..686 490 98.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21179935..21180147 641..429 1065 100 Minus
2R 25286936 2R 21181419..21181585 429..263 835 100 Minus
2R 25286936 2R 21179494..21179645 789..638 730 98.7 Minus
2R 25286936 2R 21181836..21181962 145..19 635 100 Minus
2R 25286936 2R 21181644..21181761 263..146 590 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:10:56 has no hits.

BO17946.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:48 Download gff for BO17946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9441-PA 202..975 18..789 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:29 Download gff for BO17946.3prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 377..1147 19..789 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:08 Download gff for BO17946.3prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 377..1147 19..789 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:08 Download gff for BO17946.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21181420..21181585 263..428 100 -> Minus
2R 21181645..21181761 146..262 100 -> Minus
2R 21181836..21181962 19..145 100   Minus
2R 21179938..21180147 429..638 100 -> Minus
2R 21179494..21179644 639..789 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:29 Download gff for BO17946.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17066999..17067149 639..789 98 -> Minus
arm_2R 17067443..17067652 429..638 100 -> Minus
arm_2R 17068925..17069090 263..428 100 -> Minus
arm_2R 17069150..17069266 146..262 100 -> Minus
arm_2R 17069341..17069467 19..145 100   Minus

BO17946.5prime Sequence

683 bp (682 high quality bases) assembled on 2006-10-13

> BO17946.5prime
GAAGTTATCAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTG
CCAGCGAGCTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCAC
ATCCTTTCGCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTC
GGGCACCTCCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCA
CTGCCATTGCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTC
GTCCCGTTGGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGG
CAGCAGTCCGGATAGTGATGGTACACAACCGAAAACACCACTGACACCGC
GTACATCGACAACGCCAGGCCACGAGAAGTGCACGTTCCACCACGACCTG
GAGCTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGC
ACGCTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCC
AGGGACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTC
ACCAAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTT
CGACGAGGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCT
CCATGTGCGAGCATCATCTGGTGCCCTTCTACG

BO17946.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9441-PA 975 Pu-RA 1..667 17..683 3335 100 Plus
CG9441-PC 927 Pu-RC 304..619 368..683 1580 100 Plus
CG9441-PB 822 Pu-RB 199..514 368..683 1580 100 Plus
CG9441-PC 927 Pu-RC 1..305 17..321 1525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-RA 1793 CG9441-RA 175..842 16..683 3340 100 Plus
Pu-RC 1744 CG9441-RC 478..793 368..683 1580 100 Plus
Pu-RB 1625 CG9441-RB 359..674 368..683 1580 100 Plus
Pu-RC 1744 CG9441-RC 174..479 16..321 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21179292..21179645 16..369 1770 100 Plus
2R 25286936 2R 21179935..21180147 366..578 1065 100 Plus
2R 25286936 2R 21181419..21181524 578..683 530 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:11:53 has no hits.

BO17946.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:48 Download gff for BO17946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9441-PA 1..667 17..683 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:34 Download gff for BO17946.5prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 169..842 9..683 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:18 Download gff for BO17946.5prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 169..842 9..683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:18 Download gff for BO17946.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21179286..21179644 9..368 99 -> Plus
2R 21179938..21180147 369..578 100 -> Plus
2R 21181420..21181524 579..683 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:34 Download gff for BO17946.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17066791..17067149 9..368 99 -> Plus
arm_2R 17067443..17067652 369..578 100 -> Plus
arm_2R 17068925..17069029 579..683 100   Plus

BO17946.complete Sequence

1006 bp assembled on 2006-10-11

GenBank Submission: FJ634261

> BO17946.complete
GAAGTTATCAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTG
CCAGCGAGCTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCAC
ATCCTTTCGCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTC
GGGCACCTCCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCA
CTGCCATTGCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTC
GTCCCGTTGGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGG
CAGCAGTCCGGATAGTGATGGTACACAACCGAAAACACCACTGACACCGC
GTACATCGACAACGCCAGGCCACGAGAAGTGCACGTTCCACCACGACCTG
GAGCTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGC
ACGCTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCC
AGGGACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTC
ACCAAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTT
CGACGAGGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCT
CCATGTGCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGT
TATTTGCCGTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGT
CGAAATATTTTCGCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGA
TCGCAGTGGCCGTGACTCAGGCCGTGCAACCCGCTGGAGTAGCAGTGGTC
GTAGAGGGAGTCCACATGTGCATGGTGATGCGTGGCGTGCAGAAGATCAA
CAGCAAAACTGTTACCTCAACTATGCTGGGCGTGTTCCGAGACGATCCCA
AGACCCGTGAGGAATTCCTGAACTTAGTCAATAGCAAAGCAAGCTTTCTA
GACCAT

BO17946.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-RA 975 CG9441-PA 1..972 17..988 4860 100 Plus
Pu-RC 927 CG9441-PC 304..924 368..988 3105 100 Plus
Pu-RB 822 CG9441-PB 199..819 368..988 3105 100 Plus
Pu-RC 927 CG9441-PC 1..305 17..321 1525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-RA 1793 CG9441-RA 175..1147 16..988 4865 100 Plus
Pu-RC 1744 CG9441-RC 478..1098 368..988 3105 100 Plus
Pu-RB 1625 CG9441-RB 359..979 368..988 3105 100 Plus
Pu-RC 1744 CG9441-RC 174..479 16..321 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21179292..21179645 16..369 1770 100 Plus
2R 25286936 2R 21179935..21180147 366..578 1065 100 Plus
2R 25286936 2R 21181419..21181585 578..744 835 100 Plus
2R 25286936 2R 21181836..21181962 862..988 635 100 Plus
2R 25286936 2R 21181644..21181761 744..861 590 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:07:57 has no hits.

BO17946.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:24 Download gff for BO17946.complete
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 1..975 17..989 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:57 Download gff for BO17946.complete
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 168..1146 9..988 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:11 Download gff for BO17946.complete
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 176..1147 17..990 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:25 Download gff for BO17946.complete
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 168..1146 9..988 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:36 Download gff for BO17946.complete
Subject Subject Range Query Range Percent Splice Strand
Pu-RA 176..1147 17..990 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:36 Download gff for BO17946.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21179293..21179644 17..368 100 -> Plus
2R 21179938..21180147 369..578 100 -> Plus
2R 21181420..21181585 579..744 100 -> Plus
2R 21181645..21181761 745..861 100 -> Plus
2R 21181836..21181962 862..990 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:11 Download gff for BO17946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17069341..17069467 862..990 98   Plus
arm_2R 17066798..17067149 17..368 100 -> Plus
arm_2R 17067443..17067652 369..578 100 -> Plus
arm_2R 17068925..17069090 579..744 100 -> Plus
arm_2R 17069150..17069266 745..861 100 -> Plus

BO17946.pep Sequence

Translation from 16 to 1006

> BO17946.pep
MSFTRQLSEMSASELNDAIDDTNFPQAHILSRGRNNSVCSTSSTSGTSSL
ADRQQNQAEEATAIAGTPVEEVAPAPALVPLAGNQRPRLILKTNGSSPDS
DGTQPKTPLTPRTSTTPGHEKCTFHHDLELDHKPPTREALLPDMARSYRL
LLGGLGENPDRQGLIKTPERAAKAMLYFTKGYDQSLEDVLNGAVFDEDHD
EMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCNKILGLSKLARIVEIFSR
RLQVQERLTKQIAVAVTQAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVT
STMLGVFRDDPKTREEFLNLVNSKASFLDH

BO17946.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-PA 324 CG9441-PA 1..324 1..324 1660 100 Plus
Pu-PC 308 CG9441-PC 1..308 1..324 1546 95.1 Plus
Pu-PB 273 CG9441-PB 63..273 114..324 1071 98.6 Plus