Clone BO17948 Report

Search the DGRC for BO17948

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptPitslre-RA
Protein status:BO17948.pep: validated full length
Sequenced Size:2890

Clone Sequence Records

BO17948.3prime Sequence

765 bp (670 high quality bases) assembled on 2006-10-13

> BO17948.3prime
ATGGTCTAGAAAGCTTGCGAACTTCAGACTGAATCCCGGTCCCATGGCCA
ACTGGCGCTGCGTTATTCCAGCGTTCAGGACAAATCCCGTGCTAGCCGAC
GATCCACCAGCTCCGTGGCTCTTCTTGTTGCCAGTGATAATCCCAGATGA
GAGCTTGTTTCCCGGTCCCACGATGATGGGCTCGTCGCGGCCTAGTTGCT
TGAACTGCGAGCCACCGGATGGCGGTTTGGGGGAAGAGGCTTGCGCCTTG
CGGGCTCCCAACTCGCTCTTGGCCGGCCAGGTGGGAAACATGGATGGATC
GATGGGCAATGGCAGCTCCTTGAAGAAGCCGTGCTTTAGTGCCGCGTCGG
CGCTCAGTCTTTGTTTCGGATCGTACGTCAGCAGACCCTGCAGCAGCGAC
AAGCCCATTTCAGAGGTCTTCTCCTGGAAGTGCTTGCGCAGTTGCGAGAC
GGGATACTCGGTAAACTGAGAGTTCTGCGACAACATGTTCTTCACGGCTG
GGAGCTCGGTGTATCCTGGCCAGATCTTCTCGTTCGGAGTTCCCAATTCC
TTAAAGATCCTGTTAAGCTCATCGATTTCAGATTTTCCCGGAAAGAGCGG
CAGCATCTGCAAGAATTCGGCGAAAATGCAGCCTACCGACCAGACGTCTA
TGGGCGTGGAGTAAACCGGCGAGCAGAGAAGGAGCTCGGGTGCACGATAC
CAGAGAGTGACAACAAGTGAGGTATACTTCTTGATCGGCGATCCATACTC
CCTTGCCAATCCAAA

BO17948.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4268-PA 2859 Pitslre-RA 2113..2856 762..19 3720 100 Minus
CG4268-PC 2859 Pitslre-RC 2113..2856 762..19 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Pitslre-RG 3939 CG4268-RG 3063..3806 762..19 3720 100 Minus
Pitslre-RF 3620 CG4268-RF 2744..3487 762..19 3720 100 Minus
Pitslre-RE 4391 CG4268-RE 3515..4258 762..19 3720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20776172..20776704 551..19 2665 100 Minus
3L 28110227 3L 20775841..20776054 762..549 1070 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:08:32 has no hits.

BO17948.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:50 Download gff for BO17948.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4268-PC 2113..2859 16..762 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:50:52 Download gff for BO17948.3prime
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RE 3515..4265 12..762 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:28 Download gff for BO17948.3prime
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RE 3515..4265 12..762 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:28 Download gff for BO17948.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20775841..20776053 550..762 100 -> Minus
3L 20776174..20776711 12..549 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:50:52 Download gff for BO17948.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20768941..20769153 550..762 100 -> Minus
arm_3L 20769274..20769811 12..549 99   Minus

BO17948.5prime Sequence

745 bp (722 high quality bases) assembled on 2006-10-13

> BO17948.5prime
GAAGTTATCAGTCGACATGGTCAATTCGTCTGGCAGCGAGGATGGCCAGT
TGCGGAGCCCCAACGATGTGCACTATCACAGCCGAGGCGAGGAGGATGAG
CACGAGGGCGACGCTGATGCCTTGTACATTCAACCACCGCAGGCCAGCCG
AGAATCAGGATCCGGTCCCAGGCGCGAGAAGAAGAAACATTCCCGCGAGC
GTCGACGCCACAAGGAGCGTGATGACGTAGGCGGTGCTGCACTAGCACTA
GAACGGGATCATCGATATGACTATCGGAGCCGGGAGGAGCACTACCACCA
CCACCAACGCGAACGGAGCAGCAATGCGGCTGCAGCCTATGCGAAACACC
ACCTGGGCCATGCCTACCATTACCCTCAGCCGCCTCAACAGCAGCAACAG
CCTCTACCGCCGGCGCCCAGCTATGCTGCCCACCATTATCATCATCACCA
GCATTTAAGTGGAGCTCGAGCTGCTCCCCGCGAATACCATTCCTATCCAT
CGGGCTACCATTCGGGCAGTCGACACGGCGACTACCCAATGGAGGAGCCA
ACGCGACGCAGCAGTAAGTACGCGGAGAGCAAGGATGCTGAGAGCCTGGA
ACAGGATCTGCGATCGAGGTTGCTGAAAAAGCGCCATAACTACGTTAAGG
ATTATGAAACGGAGGAGAACTATGAGCATCGGGTCGAGAGAAGTGATCGC
CGGGAGGGAGGACGCAAAGAGCGGGAGAGAACTGTGCGAAGTACC

BO17948.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4268-PA 2859 Pitslre-RA 1..729 17..745 3645 100 Plus
CG4268-PC 2859 Pitslre-RC 1..729 17..745 3645 100 Plus
CG4268-PD 225 Pitslre-RD 1..65 17..81 325 100 Plus
CG4268-PB 225 Pitslre-RB 1..65 17..81 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pitslre-RC 3296 CG4268-RC 214..942 17..745 3645 100 Plus
Pitslre-RA 3355 CG4268-RA 273..1001 17..745 3645 100 Plus
Pitslre-RG 3939 CG4268-RG 1014..1679 80..745 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20773792..20774457 80..745 3330 100 Plus
3L 28110227 3L 20771800..20771864 17..81 325 100 Plus
Blast to na_te.dros performed 2015-02-10 15:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6804 371..453 124 65.1 Plus
roo 9092 roo DM_ROO 9092bp 1104..1139 366..401 108 77.8 Plus

BO17948.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:51 Download gff for BO17948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4268-PC 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:25:06 Download gff for BO17948.5prime
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RA 273..1001 17..745 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:33 Download gff for BO17948.5prime
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RA 273..1001 17..745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:33 Download gff for BO17948.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20771800..20771864 17..81 100 -> Plus
3L 20773794..20774457 82..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:25:06 Download gff for BO17948.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20764900..20764964 17..81 100 -> Plus
arm_3L 20766894..20767557 82..745 100   Plus

BO17948.complete Sequence

2890 bp assembled on 2007-03-23

GenBank Submission: FJ634262

> BO17948.complete
GAAGTTATCAGTCGACATGGTCAATTCGTCTGGCAGCGAGGATGGCCAGT
TGCGGAGCCCCAACGATGTGCACTATCACAGCCGAGGCGAGGAGGATGAG
CACGAGGGCGACGCTGATGCCTTGTACATTCAACCACCGCAGGCCAGCCG
AGAATCAGGATCCGGTCCCAGGCGCGAGAAGAAGAAACATTCCCGCGAGC
GTCGACGCCACAAGGAGCGTGATGACGTAGGCGGTGCTGCACTAGCACTA
GAACGGGATCATCGATATGACTATCGGAGCCGGGAGGAGCACTACCACCA
CCACCAACGCGAACGGAGCAGCAATGCGGCTGCAGCCTATGCGAAACACC
ACCTGGGCCATGCCTACCATTACCCTCAGCCGCCTCAACAGCAGCAACAG
CCTCTACCGCCGGCGCCCAGCTATGCTGCCCACCATTATCATCATCACCA
GCATTTAAGTGGAGCTCGAGCTGCTCCCCGCGAATACCATTCCTATCCAT
CGGGCTACCATTCGGGCAGTCGACACGGCGACTACCCAATGGAGGAGCCA
ACGCGACGCAGCAGTAAGTACGCGGAGAGCAAGGATGCTGAGAGCCTGGA
ACAGGATCTGCGATCGAGGTTGCTGAAAAAGCGCCATAACTACGTTAAGG
ATTATGAAACGGAGGAGAACTATGAGCATCGGGTCGAGAGAAGTGATCGC
CGGGAGGGAGGACGCAAAGAGCGGGAGAGAACTGTGCGAAGTACCCACAA
GCAAAACCGTCACGACCGAGTCATTGAGCTGCTGGACAGTCCTGAGCAGG
AGCACCACCATCAGCACCAGCACAAATCGCATCGCAGCAAGTGGCGCGAG
GAGGTTGAGGTTATCAGACGAAAGGTGCCCGAGGACTTGGAGCTGTTGGC
TCGCAGGGAAAAACTTCTTGCCGCTGAACGGGAAAGCCGCCAGCGAAAAC
AGACGGCTCGTGAGGAACTGGAAGCTCGGCGGGAGTTGCTCCGCGAGCGA
AACGAGCACAGTGATGCACTTAGTCCAACAACAGTGGCTGCAAGTGTAAC
CGCAGGTCTGAACATTCATGTGAAGAGGAAGTCCAAGCCGGATAACTATG
AGAAGGAAATCAAACTCAAGAAGCGGCGGGAAGATGATATCGAGGTTATC
CGAGATGATGACGATGAGGAAAGCGAGGAGAGCGACTCAAACGAGGAGGT
TCCTGAGCAAGACAGCGAAGGAAGCGCAACAGAGTCTGGAAGCGAAGACA
GCTATGCTAGCAAAAAGAAGAGCAAGATTAAATCCAAGTCTCAATTGGAA
GACGATGACGAGGATTTACCCTTACCCGACAGTCCACTTAGCGTGGGTGA
GCTATACAAGTCGCCCAAGCAACGTCAGCGATCTCGCTCTGTAAGCTCCA
AGAGCAGCTCCCAGTCCAGTCGAAGCAGTCGGTCCAGATCCCGTTCTAGA
AGTCAAAGCAGCCTAGAGGATGAGGTAGATCGTCAAGACGTGGGGGCAGA
TGCCTCACCCAGCAGCAGCACACGCAGCGAGGAACGTGGAATGACCCAAG
AGCAGCCGGAAGAGAAGCCCGAGGAGAAACTCAAAGAGAAACAGAAGTCT
CTGGAGGAGCAAATTCCGTGCGATGACAAGGGCATTCCCCTGCCCAACTA
TTATCCCGGTGTGCAGGGCTGCCGGTCTGTGGAGGAATTCCAGTGTCTAA
ACCGCATCGAAGAGGGAACCTATGGAGTGGTATATCGAGCCAAGGACAAA
AGAACCAATGAGATTGTGGCTCTTAAGCGTCTGAAAATGGAGAAGGAAAA
GGAGGGATTTCCGATAACATCACTCAGGGAGATCAACACTCTTCTCAAGG
GTCAGCACCCGAATATTGTGACCGTTCGCGAGATCGTGGTCGGATCCAAC
ATGGATAAGATATTTATTGTGATGGACTATGTAGAACACGACCTGAAATC
CCTGATGGAAACGATGAAAAATCGTAAGCAGAGCTTTTTCCCCGGAGAAG
TCAAATGTCTGACGCAGCAGCTTCTGCGGGCGGTGGCCCACCTCCATGAC
AATTGGATATTGCATCGTGACCTGAAGACCTCCAATCTCCTCTTGTCCCA
CAAGGGCATTCTCAAGGTGGGTGATTTCGGATTGGCAAGGGAGTATGGAT
CGCCGATCAAGAAGTATACCTCACTTGTTGTCACTCTCTGGTATCGTGCA
CCCGAGCTCCTTCTCTGCTCGCCGGTTTACTCCACGCCCATAGACGTCTG
GTCGGTAGGCTGCATTTTCGCCGAATTCTTGCAGATGCTGCCGCTCTTTC
CGGGAAAATCTGAAATCGATGAGCTTAACAGGATCTTTAAGGAATTGGGA
ACTCCGAACGAGAAGATCTGGCCAGGATACACCGAGCTCCCAGCCGTGAA
GAACATGTTGTCGCAGAACTCTCAGTTTACCGAGTATCCCGTCTCGCAAC
TGCGCAAGCACTTCCAGGAGAAGACCTCTGAAATGGGCTTGTCGCTGCTG
CAGGGTCTGCTGACGTACGATCCGAAACAAAGACTGAGCGCCGACGCGGC
ACTAAAGCACGGCTTCTTCAAGGAGCTGCCATTGCCCATCGATCCATCCA
TGTTTCCCACCTGGCCGGCCAAGAGCGAGTTGGGAGCCCGCAAGGCGCAA
GCCTCTTCCCCCAAACCGCCATCCGGTGGCTCGCAGTTCAAGCAACTAGG
CCGCGACGAGCCCATCATCGTGGGACCGGGAAACAAGCTCTCATCTGGGA
TTATCACTGGCAACAAGAAGAGCCACGGAGCTGGTGGATCGTCGGCTAGC
ACGGGATTTGTCCTGAACGCTGGAATAACGCAGCGCCAGTTGGCCATGGG
ACCGGGATTCAGTCTGAAGTTCGCAAGCTTTCTAGACCAT

BO17948.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pitslre-RC 2859 CG4268-PC 1..2856 17..2872 14280 100 Plus
Pitslre-RA 2859 CG4268-PA 1..2856 17..2872 14280 100 Plus
Pitslre-RG 2337 CG4268-PG 1..2334 539..2872 11670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pitslre-RC 3296 CG4268-RC 214..3069 17..2872 14280 100 Plus
Pitslre-RA 3355 CG4268-RA 273..3128 17..2872 14280 100 Plus
Pitslre-RG 3939 CG4268-RG 1014..3806 80..2872 13965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20773792..20776054 80..2342 11315 100 Plus
3L 28110227 3L 20776172..20776704 2340..2872 2665 100 Plus
3L 28110227 3L 20771800..20771864 17..81 325 100 Plus
Blast to na_te.dros performed 2014-11-27 16:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6804 371..453 124 65.1 Plus

BO17948.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:58 Download gff for BO17948.complete
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RC 1..2859 17..2875 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:18 Download gff for BO17948.complete
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RC 176..3038 17..2879 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:04 Download gff for BO17948.complete
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RA 273..3128 17..2874 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:58 Download gff for BO17948.complete
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RC 176..3038 17..2879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:47 Download gff for BO17948.complete
Subject Subject Range Query Range Percent Splice Strand
Pitslre-RA 273..3128 17..2874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:47 Download gff for BO17948.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20771800..20771864 17..81 100 -> Plus
3L 20773794..20776053 82..2341 100 -> Plus
3L 20776174..20776704 2342..2874 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:04 Download gff for BO17948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20764900..20764964 17..81 100 -> Plus
arm_3L 20766894..20769153 82..2341 100 -> Plus
arm_3L 20769274..20769804 2342..2874 99   Plus

BO17948.pep Sequence

Translation from 16 to 2890

> BO17948.pep
MVNSSGSEDGQLRSPNDVHYHSRGEEDEHEGDADALYIQPPQASRESGSG
PRREKKKHSRERRRHKERDDVGGAALALERDHRYDYRSREEHYHHHQRER
SSNAAAAYAKHHLGHAYHYPQPPQQQQQPLPPAPSYAAHHYHHHQHLSGA
RAAPREYHSYPSGYHSGSRHGDYPMEEPTRRSSKYAESKDAESLEQDLRS
RLLKKRHNYVKDYETEENYEHRVERSDRREGGRKERERTVRSTHKQNRHD
RVIELLDSPEQEHHHQHQHKSHRSKWREEVEVIRRKVPEDLELLARREKL
LAAERESRQRKQTAREELEARRELLRERNEHSDALSPTTVAASVTAGLNI
HVKRKSKPDNYEKEIKLKKRREDDIEVIRDDDDEESEESDSNEEVPEQDS
EGSATESGSEDSYASKKKSKIKSKSQLEDDDEDLPLPDSPLSVGELYKSP
KQRQRSRSVSSKSSSQSSRSSRSRSRSRSQSSLEDEVDRQDVGADASPSS
STRSEERGMTQEQPEEKPEEKLKEKQKSLEEQIPCDDKGIPLPNYYPGVQ
GCRSVEEFQCLNRIEEGTYGVVYRAKDKRTNEIVALKRLKMEKEKEGFPI
TSLREINTLLKGQHPNIVTVREIVVGSNMDKIFIVMDYVEHDLKSLMETM
KNRKQSFFPGEVKCLTQQLLRAVAHLHDNWILHRDLKTSNLLLSHKGILK
VGDFGLAREYGSPIKKYTSLVVTLWYRAPELLLCSPVYSTPIDVWSVGCI
FAEFLQMLPLFPGKSEIDELNRIFKELGTPNEKIWPGYTELPAVKNMLSQ
NSQFTEYPVSQLRKHFQEKTSEMGLSLLQGLLTYDPKQRLSADAALKHGF
FKELPLPIDPSMFPTWPAKSELGARKAQASSPKPPSGGSQFKQLGRDEPI
IVGPGNKLSSGIITGNKKSHGAGGSSASTGFVLNAGITQRQLAMGPGFSL
KFASFLDH

BO17948.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pitslre-PC 952 CG4268-PC 1..952 1..952 4974 100 Plus
Pitslre-PA 952 CG4268-PA 1..952 1..952 4974 100 Plus
Pitslre-PG 778 CG4268-PG 1..778 175..952 4000 100 Plus
Pitslre-PF 778 CG4268-PF 1..778 175..952 4000 100 Plus
Pitslre-PE 778 CG4268-PE 1..778 175..952 4000 100 Plus