Clone Sequence Records
BO17948.3prime Sequence
765 bp (670 high quality bases) assembled on 2006-10-13
> BO17948.3prime
ATGGTCTAGAAAGCTTGCGAACTTCAGACTGAATCCCGGTCCCATGGCCA
ACTGGCGCTGCGTTATTCCAGCGTTCAGGACAAATCCCGTGCTAGCCGAC
GATCCACCAGCTCCGTGGCTCTTCTTGTTGCCAGTGATAATCCCAGATGA
GAGCTTGTTTCCCGGTCCCACGATGATGGGCTCGTCGCGGCCTAGTTGCT
TGAACTGCGAGCCACCGGATGGCGGTTTGGGGGAAGAGGCTTGCGCCTTG
CGGGCTCCCAACTCGCTCTTGGCCGGCCAGGTGGGAAACATGGATGGATC
GATGGGCAATGGCAGCTCCTTGAAGAAGCCGTGCTTTAGTGCCGCGTCGG
CGCTCAGTCTTTGTTTCGGATCGTACGTCAGCAGACCCTGCAGCAGCGAC
AAGCCCATTTCAGAGGTCTTCTCCTGGAAGTGCTTGCGCAGTTGCGAGAC
GGGATACTCGGTAAACTGAGAGTTCTGCGACAACATGTTCTTCACGGCTG
GGAGCTCGGTGTATCCTGGCCAGATCTTCTCGTTCGGAGTTCCCAATTCC
TTAAAGATCCTGTTAAGCTCATCGATTTCAGATTTTCCCGGAAAGAGCGG
CAGCATCTGCAAGAATTCGGCGAAAATGCAGCCTACCGACCAGACGTCTA
TGGGCGTGGAGTAAACCGGCGAGCAGAGAAGGAGCTCGGGTGCACGATAC
CAGAGAGTGACAACAAGTGAGGTATACTTCTTGATCGGCGATCCATACTC
CCTTGCCAATCCAAA
BO17948.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4268-PA | 2859 | Pitslre-RA | 2113..2856 | 762..19 | 3720 | 100 | Minus |
CG4268-PC | 2859 | Pitslre-RC | 2113..2856 | 762..19 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pitslre-RG | 3939 | CG4268-RG | 3063..3806 | 762..19 | 3720 | 100 | Minus |
Pitslre-RF | 3620 | CG4268-RF | 2744..3487 | 762..19 | 3720 | 100 | Minus |
Pitslre-RE | 4391 | CG4268-RE | 3515..4258 | 762..19 | 3720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20776172..20776704 | 551..19 | 2665 | 100 | Minus |
3L | 28110227 | 3L | 20775841..20776054 | 762..549 | 1070 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:08:32 has no hits.
BO17948.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:50 Download gff for
BO17948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4268-PC | 2113..2859 | 16..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:50:52 Download gff for
BO17948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RE | 3515..4265 | 12..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:28 Download gff for
BO17948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RE | 3515..4265 | 12..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:28 Download gff for
BO17948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20775841..20776053 | 550..762 | 100 | -> | Minus |
3L | 20776174..20776711 | 12..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:50:52 Download gff for
BO17948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20768941..20769153 | 550..762 | 100 | -> | Minus |
arm_3L | 20769274..20769811 | 12..549 | 99 | | Minus |
BO17948.5prime Sequence
745 bp (722 high quality bases) assembled on 2006-10-13
> BO17948.5prime
GAAGTTATCAGTCGACATGGTCAATTCGTCTGGCAGCGAGGATGGCCAGT
TGCGGAGCCCCAACGATGTGCACTATCACAGCCGAGGCGAGGAGGATGAG
CACGAGGGCGACGCTGATGCCTTGTACATTCAACCACCGCAGGCCAGCCG
AGAATCAGGATCCGGTCCCAGGCGCGAGAAGAAGAAACATTCCCGCGAGC
GTCGACGCCACAAGGAGCGTGATGACGTAGGCGGTGCTGCACTAGCACTA
GAACGGGATCATCGATATGACTATCGGAGCCGGGAGGAGCACTACCACCA
CCACCAACGCGAACGGAGCAGCAATGCGGCTGCAGCCTATGCGAAACACC
ACCTGGGCCATGCCTACCATTACCCTCAGCCGCCTCAACAGCAGCAACAG
CCTCTACCGCCGGCGCCCAGCTATGCTGCCCACCATTATCATCATCACCA
GCATTTAAGTGGAGCTCGAGCTGCTCCCCGCGAATACCATTCCTATCCAT
CGGGCTACCATTCGGGCAGTCGACACGGCGACTACCCAATGGAGGAGCCA
ACGCGACGCAGCAGTAAGTACGCGGAGAGCAAGGATGCTGAGAGCCTGGA
ACAGGATCTGCGATCGAGGTTGCTGAAAAAGCGCCATAACTACGTTAAGG
ATTATGAAACGGAGGAGAACTATGAGCATCGGGTCGAGAGAAGTGATCGC
CGGGAGGGAGGACGCAAAGAGCGGGAGAGAACTGTGCGAAGTACC
BO17948.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4268-PA | 2859 | Pitslre-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
CG4268-PC | 2859 | Pitslre-RC | 1..729 | 17..745 | 3645 | 100 | Plus |
CG4268-PD | 225 | Pitslre-RD | 1..65 | 17..81 | 325 | 100 | Plus |
CG4268-PB | 225 | Pitslre-RB | 1..65 | 17..81 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pitslre-RC | 3296 | CG4268-RC | 214..942 | 17..745 | 3645 | 100 | Plus |
Pitslre-RA | 3355 | CG4268-RA | 273..1001 | 17..745 | 3645 | 100 | Plus |
Pitslre-RG | 3939 | CG4268-RG | 1014..1679 | 80..745 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20773792..20774457 | 80..745 | 3330 | 100 | Plus |
3L | 28110227 | 3L | 20771800..20771864 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 15:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6804 | 371..453 | 124 | 65.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1104..1139 | 366..401 | 108 | 77.8 | Plus |
BO17948.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:51 Download gff for
BO17948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4268-PC | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:25:06 Download gff for
BO17948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RA | 273..1001 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:33 Download gff for
BO17948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RA | 273..1001 | 17..745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:33 Download gff for
BO17948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20771800..20771864 | 17..81 | 100 | -> | Plus |
3L | 20773794..20774457 | 82..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:25:06 Download gff for
BO17948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20764900..20764964 | 17..81 | 100 | -> | Plus |
arm_3L | 20766894..20767557 | 82..745 | 100 | | Plus |
BO17948.complete Sequence
2890 bp assembled on 2007-03-23
GenBank Submission: FJ634262
> BO17948.complete
GAAGTTATCAGTCGACATGGTCAATTCGTCTGGCAGCGAGGATGGCCAGT
TGCGGAGCCCCAACGATGTGCACTATCACAGCCGAGGCGAGGAGGATGAG
CACGAGGGCGACGCTGATGCCTTGTACATTCAACCACCGCAGGCCAGCCG
AGAATCAGGATCCGGTCCCAGGCGCGAGAAGAAGAAACATTCCCGCGAGC
GTCGACGCCACAAGGAGCGTGATGACGTAGGCGGTGCTGCACTAGCACTA
GAACGGGATCATCGATATGACTATCGGAGCCGGGAGGAGCACTACCACCA
CCACCAACGCGAACGGAGCAGCAATGCGGCTGCAGCCTATGCGAAACACC
ACCTGGGCCATGCCTACCATTACCCTCAGCCGCCTCAACAGCAGCAACAG
CCTCTACCGCCGGCGCCCAGCTATGCTGCCCACCATTATCATCATCACCA
GCATTTAAGTGGAGCTCGAGCTGCTCCCCGCGAATACCATTCCTATCCAT
CGGGCTACCATTCGGGCAGTCGACACGGCGACTACCCAATGGAGGAGCCA
ACGCGACGCAGCAGTAAGTACGCGGAGAGCAAGGATGCTGAGAGCCTGGA
ACAGGATCTGCGATCGAGGTTGCTGAAAAAGCGCCATAACTACGTTAAGG
ATTATGAAACGGAGGAGAACTATGAGCATCGGGTCGAGAGAAGTGATCGC
CGGGAGGGAGGACGCAAAGAGCGGGAGAGAACTGTGCGAAGTACCCACAA
GCAAAACCGTCACGACCGAGTCATTGAGCTGCTGGACAGTCCTGAGCAGG
AGCACCACCATCAGCACCAGCACAAATCGCATCGCAGCAAGTGGCGCGAG
GAGGTTGAGGTTATCAGACGAAAGGTGCCCGAGGACTTGGAGCTGTTGGC
TCGCAGGGAAAAACTTCTTGCCGCTGAACGGGAAAGCCGCCAGCGAAAAC
AGACGGCTCGTGAGGAACTGGAAGCTCGGCGGGAGTTGCTCCGCGAGCGA
AACGAGCACAGTGATGCACTTAGTCCAACAACAGTGGCTGCAAGTGTAAC
CGCAGGTCTGAACATTCATGTGAAGAGGAAGTCCAAGCCGGATAACTATG
AGAAGGAAATCAAACTCAAGAAGCGGCGGGAAGATGATATCGAGGTTATC
CGAGATGATGACGATGAGGAAAGCGAGGAGAGCGACTCAAACGAGGAGGT
TCCTGAGCAAGACAGCGAAGGAAGCGCAACAGAGTCTGGAAGCGAAGACA
GCTATGCTAGCAAAAAGAAGAGCAAGATTAAATCCAAGTCTCAATTGGAA
GACGATGACGAGGATTTACCCTTACCCGACAGTCCACTTAGCGTGGGTGA
GCTATACAAGTCGCCCAAGCAACGTCAGCGATCTCGCTCTGTAAGCTCCA
AGAGCAGCTCCCAGTCCAGTCGAAGCAGTCGGTCCAGATCCCGTTCTAGA
AGTCAAAGCAGCCTAGAGGATGAGGTAGATCGTCAAGACGTGGGGGCAGA
TGCCTCACCCAGCAGCAGCACACGCAGCGAGGAACGTGGAATGACCCAAG
AGCAGCCGGAAGAGAAGCCCGAGGAGAAACTCAAAGAGAAACAGAAGTCT
CTGGAGGAGCAAATTCCGTGCGATGACAAGGGCATTCCCCTGCCCAACTA
TTATCCCGGTGTGCAGGGCTGCCGGTCTGTGGAGGAATTCCAGTGTCTAA
ACCGCATCGAAGAGGGAACCTATGGAGTGGTATATCGAGCCAAGGACAAA
AGAACCAATGAGATTGTGGCTCTTAAGCGTCTGAAAATGGAGAAGGAAAA
GGAGGGATTTCCGATAACATCACTCAGGGAGATCAACACTCTTCTCAAGG
GTCAGCACCCGAATATTGTGACCGTTCGCGAGATCGTGGTCGGATCCAAC
ATGGATAAGATATTTATTGTGATGGACTATGTAGAACACGACCTGAAATC
CCTGATGGAAACGATGAAAAATCGTAAGCAGAGCTTTTTCCCCGGAGAAG
TCAAATGTCTGACGCAGCAGCTTCTGCGGGCGGTGGCCCACCTCCATGAC
AATTGGATATTGCATCGTGACCTGAAGACCTCCAATCTCCTCTTGTCCCA
CAAGGGCATTCTCAAGGTGGGTGATTTCGGATTGGCAAGGGAGTATGGAT
CGCCGATCAAGAAGTATACCTCACTTGTTGTCACTCTCTGGTATCGTGCA
CCCGAGCTCCTTCTCTGCTCGCCGGTTTACTCCACGCCCATAGACGTCTG
GTCGGTAGGCTGCATTTTCGCCGAATTCTTGCAGATGCTGCCGCTCTTTC
CGGGAAAATCTGAAATCGATGAGCTTAACAGGATCTTTAAGGAATTGGGA
ACTCCGAACGAGAAGATCTGGCCAGGATACACCGAGCTCCCAGCCGTGAA
GAACATGTTGTCGCAGAACTCTCAGTTTACCGAGTATCCCGTCTCGCAAC
TGCGCAAGCACTTCCAGGAGAAGACCTCTGAAATGGGCTTGTCGCTGCTG
CAGGGTCTGCTGACGTACGATCCGAAACAAAGACTGAGCGCCGACGCGGC
ACTAAAGCACGGCTTCTTCAAGGAGCTGCCATTGCCCATCGATCCATCCA
TGTTTCCCACCTGGCCGGCCAAGAGCGAGTTGGGAGCCCGCAAGGCGCAA
GCCTCTTCCCCCAAACCGCCATCCGGTGGCTCGCAGTTCAAGCAACTAGG
CCGCGACGAGCCCATCATCGTGGGACCGGGAAACAAGCTCTCATCTGGGA
TTATCACTGGCAACAAGAAGAGCCACGGAGCTGGTGGATCGTCGGCTAGC
ACGGGATTTGTCCTGAACGCTGGAATAACGCAGCGCCAGTTGGCCATGGG
ACCGGGATTCAGTCTGAAGTTCGCAAGCTTTCTAGACCAT
BO17948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pitslre-RC | 2859 | CG4268-PC | 1..2856 | 17..2872 | 14280 | 100 | Plus |
Pitslre-RA | 2859 | CG4268-PA | 1..2856 | 17..2872 | 14280 | 100 | Plus |
Pitslre-RG | 2337 | CG4268-PG | 1..2334 | 539..2872 | 11670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pitslre-RC | 3296 | CG4268-RC | 214..3069 | 17..2872 | 14280 | 100 | Plus |
Pitslre-RA | 3355 | CG4268-RA | 273..3128 | 17..2872 | 14280 | 100 | Plus |
Pitslre-RG | 3939 | CG4268-RG | 1014..3806 | 80..2872 | 13965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20773792..20776054 | 80..2342 | 11315 | 100 | Plus |
3L | 28110227 | 3L | 20776172..20776704 | 2340..2872 | 2665 | 100 | Plus |
3L | 28110227 | 3L | 20771800..20771864 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6804 | 371..453 | 124 | 65.1 | Plus |
BO17948.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:58 Download gff for
BO17948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RC | 1..2859 | 17..2875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:18 Download gff for
BO17948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RC | 176..3038 | 17..2879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:04 Download gff for
BO17948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RA | 273..3128 | 17..2874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:58 Download gff for
BO17948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RC | 176..3038 | 17..2879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:47 Download gff for
BO17948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pitslre-RA | 273..3128 | 17..2874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:47 Download gff for
BO17948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20771800..20771864 | 17..81 | 100 | -> | Plus |
3L | 20773794..20776053 | 82..2341 | 100 | -> | Plus |
3L | 20776174..20776704 | 2342..2874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:04 Download gff for
BO17948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20764900..20764964 | 17..81 | 100 | -> | Plus |
arm_3L | 20766894..20769153 | 82..2341 | 100 | -> | Plus |
arm_3L | 20769274..20769804 | 2342..2874 | 99 | | Plus |
BO17948.pep Sequence
Translation from 16 to 2890
> BO17948.pep
MVNSSGSEDGQLRSPNDVHYHSRGEEDEHEGDADALYIQPPQASRESGSG
PRREKKKHSRERRRHKERDDVGGAALALERDHRYDYRSREEHYHHHQRER
SSNAAAAYAKHHLGHAYHYPQPPQQQQQPLPPAPSYAAHHYHHHQHLSGA
RAAPREYHSYPSGYHSGSRHGDYPMEEPTRRSSKYAESKDAESLEQDLRS
RLLKKRHNYVKDYETEENYEHRVERSDRREGGRKERERTVRSTHKQNRHD
RVIELLDSPEQEHHHQHQHKSHRSKWREEVEVIRRKVPEDLELLARREKL
LAAERESRQRKQTAREELEARRELLRERNEHSDALSPTTVAASVTAGLNI
HVKRKSKPDNYEKEIKLKKRREDDIEVIRDDDDEESEESDSNEEVPEQDS
EGSATESGSEDSYASKKKSKIKSKSQLEDDDEDLPLPDSPLSVGELYKSP
KQRQRSRSVSSKSSSQSSRSSRSRSRSRSQSSLEDEVDRQDVGADASPSS
STRSEERGMTQEQPEEKPEEKLKEKQKSLEEQIPCDDKGIPLPNYYPGVQ
GCRSVEEFQCLNRIEEGTYGVVYRAKDKRTNEIVALKRLKMEKEKEGFPI
TSLREINTLLKGQHPNIVTVREIVVGSNMDKIFIVMDYVEHDLKSLMETM
KNRKQSFFPGEVKCLTQQLLRAVAHLHDNWILHRDLKTSNLLLSHKGILK
VGDFGLAREYGSPIKKYTSLVVTLWYRAPELLLCSPVYSTPIDVWSVGCI
FAEFLQMLPLFPGKSEIDELNRIFKELGTPNEKIWPGYTELPAVKNMLSQ
NSQFTEYPVSQLRKHFQEKTSEMGLSLLQGLLTYDPKQRLSADAALKHGF
FKELPLPIDPSMFPTWPAKSELGARKAQASSPKPPSGGSQFKQLGRDEPI
IVGPGNKLSSGIITGNKKSHGAGGSSASTGFVLNAGITQRQLAMGPGFSL
KFASFLDH
BO17948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pitslre-PC | 952 | CG4268-PC | 1..952 | 1..952 | 4974 | 100 | Plus |
Pitslre-PA | 952 | CG4268-PA | 1..952 | 1..952 | 4974 | 100 | Plus |
Pitslre-PG | 778 | CG4268-PG | 1..778 | 175..952 | 4000 | 100 | Plus |
Pitslre-PF | 778 | CG4268-PF | 1..778 | 175..952 | 4000 | 100 | Plus |
Pitslre-PE | 778 | CG4268-PE | 1..778 | 175..952 | 4000 | 100 | Plus |