Clone Sequence Records
BO17952.3prime Sequence
692 bp (646 high quality bases) assembled on 2006-10-13
> BO17952.3prime
ATGGTCTAGAAAGCTTGCAAGCTTGCTCTCCTTCGCCTCCTTGGCCTTCT
GGCGGGATGCAGCCGCTGCCGCCGGTCCGAAGCGCTGGATAAAGTTGTTG
ACCGGTGCAATGATGGCCTCTGGATCGTTCATGTGCACATGGTGCGAGCC
ATTAACCTCCAGGTACTCAAAGTTCGGCTTCTTCAACAGCACATCCAGCA
CCTCGTCGTAGTACTTCTTGTCCTCGAAATACGAGGACTGGGCGGCCTTG
ATGAACAAGTAAGGACATGTAATCCGATTGGCCATTTCCACACACAGCTC
CTGGGACCCGATGGCATAGTTGTAAAACTTGAGACGCCTATCGCGGCAGA
AGAAGTACTTGTCCGGGTACTTCTCCGACTTGCCGATGTTGCGAGCCATT
AAATGCTTGCAGTGCTCCTTGTTCACCGAATGGAAGGTGCCGATATAGAC
CCTCTCAATAAGTTCATCGTAGGTGTAGCTCGGCGGCTCGTTCTTACTCC
GGTTCCTTTCGTCTTCACGCAAGAACTCGTCCAAACGGGTTTCCATGGTC
CTAATAACCGACGGATACGGACGCTGATGAGGTTTCAGGGCATCAATCCC
AATGATCATGTCCACCTTGTCCGGAAAGACCGCGGCGAAAACAAAGCAAA
TAATGGACGACATTGAGTGTCCCACCAGGGACACTTTCTCCC
BO17952.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PB | 1047 | CG11309-RB | 371..1044 | 692..19 | 3345 | 99.8 | Minus |
CG11309-PA | 1077 | CG11309-RA | 401..1074 | 692..19 | 3345 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RF | 2125 | CG11309-RF | 629..1302 | 692..19 | 3355 | 99.9 | Minus |
CG11309-RE | 1206 | CG11309-RE | 405..1078 | 692..19 | 3355 | 99.9 | Minus |
CG11309-RD | 1536 | CG11309-RD | 531..1204 | 692..19 | 3355 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302608..21303281 | 19..692 | 3355 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:05:56 has no hits.
BO17952.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:52 Download gff for
BO17952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-PA | 401..1077 | 18..692 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:39 Download gff for
BO17952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RC | 501..1179 | 13..692 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:32 Download gff for
BO17952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RD | 531..1209 | 13..692 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:32 Download gff for
BO17952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302603..21303281 | 13..692 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:39 Download gff for
BO17952.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295703..21296381 | 13..692 | 99 | | Plus |
BO17952.5prime Sequence
809 bp (680 high quality bases) assembled on 2006-10-13
> BO17952.5prime
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCCGTGCAAACATATGGTGCTCTAAAAAATACTT
CGCCGAGATCAGCATTACGGTTCCATGGGGGCACATATCCGGCAAGTGGT
ACGGTCCGCAGAACGTCCAACCAATTTTAGGACTGCACGGGTGGCAGGAT
AATGCGGGAACCTTTGATCGCCTGATGCCGCTGCTGTCGCCGGACGTGGC
ATTCCTCGCGATCGATCTTCCTGGTCACGGGCTATCGTCCCGACTGCCTG
ATGGCTGCTACTACAACTCCGTGGATAATCTGTATGTGATCCGCCTGATC
ATGAAGCAGTACAAGTGGGAGAAAGTGTCCCTGGTTGGACACTCAATGTC
GTCCATTATTTGCTTTGTTTTCGCCGCGGTCTTTCCGGACAAGGTGGACA
TGATCATTGGGATTGATGCCCTGAAACCTCATCAGCGTCCGTATCCGTCG
GTTATTAGGACCATGGAAACCCGTTTGGACGAGTTCTTGCGTGAAGACGA
AAGGAACCGGAGTAAGAACGAGCCGCCGAGCTACACCTACGATGAACTTA
TTGAGAGGGTCTATATCGGCACCTTCCATTCGGTGAACAAGGAGCACTGC
AAGCATTTAATGGCTCGCAACATCGGCAAGTCGGAGAAGTACCCGGACAA
GTACTTCTTCTGCCGCGATAGGCGTCTCAAGTTTTACAACTATGCCATCG
GGGTCCCAG
BO17952.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PA | 1077 | CG11309-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG11309-PB | 1047 | CG11309-RB | 102..756 | 148..802 | 3275 | 100 | Plus |
CG11309-PB | 1047 | CG11309-RB | 1..102 | 17..118 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RA | 1664 | CG11309-RA | 259..1050 | 17..809 | 3940 | 99.9 | Plus |
CG11309-RF | 2125 | CG11309-RF | 360..1020 | 148..809 | 3285 | 99.8 | Plus |
CG11309-RE | 1206 | CG11309-RE | 136..796 | 148..809 | 3285 | 99.8 | Plus |
CG11309-RF | 2125 | CG11309-RF | 259..360 | 17..118 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302896..21303549 | 802..149 | 3270 | 100 | Minus |
3L | 28110227 | 3L | 21303910..21304011 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 21305088..21305198 | 158..268 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:49:57 has no hits.
BO17952.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:53 Download gff for
BO17952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-PA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:54 Download gff for
BO17952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 256..1050 | 14..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:48 Download gff for
BO17952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 256..1050 | 14..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:48 Download gff for
BO17952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302890..21303549 | 149..809 | 99 | <- | Minus |
3L | 21303808..21303837 | 119..148 | 100 | <- | Minus |
3L | 21303910..21304014 | 14..118 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:54 Download gff for
BO17952.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295990..21296649 | 149..809 | 99 | <- | Minus |
arm_3L | 21296908..21296937 | 119..148 | 100 | <- | Minus |
arm_3L | 21297010..21297114 | 14..118 | 99 | | Minus |
BO17952.complete Sequence
1108 bp assembled on 2006-10-11
GenBank Submission: FJ634263
> BO17952.complete
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCCGTGCAAACATATGGTGCTCTAAAAAATACTT
CGCCGAGATCAGCATTACGGTTCCATGGGGGCACATATCCGGCAAGTGGT
ACGGTCCGCAGAACGTCCAACCAATTTTAGGACTGCACGGGTGGCAGGAT
AATGCGGGAACCTTTGATCGCCTGATGCCGCTGCTGTCGCCGGACGTGGC
ATTCCTCGCGATCGATCTTCCTGGTCACGGGCTATCGTCCCGACTGCCTG
ATGGCTGCTACTACAACTCCGTGGATAATCTGTATGTGATCCGCCTGATC
ATGAAGCAGTACAAGTGGGAGAAAGTGTCCCTGGTTGGACACTCAATGTC
GTCCATTATTTGCTTTGTTTTCGCCGCGGTCTTTCCGGACAAGGTGGACA
TGATCATTGGGATTGATGCCCTGAAACCTCATCAGCGTCCGTATCCGTCG
GTTATTAGGACCATGGAAACCCGTTTGGACGAGTTCTTGCGTGAAGACGA
AAGGAACCGGAGTAAGAACGAGCCGCCGAGCTACACCTACGATGAACTTA
TTGAGAGGGTCTATATCGGCACCTTCCATTCGGTGAACAAGGAGCACTGC
AAGCATTTAATGGCTCGCAACATCGGCAAGTCGGAGAAGTACCCGGACAA
GTACTTCTTCTGCCGCGATAGGCGTCTCAAGTTTTACAACTATGCCATCG
GGTCCCAGGAGCTGTGTGTGGAAATGGCCAATCGGATTACATGTCCTTAC
TTGTTCATCAAGGCCGCCCAGTCCTCGTATTTCGAGGACAAGAAGTACTA
CGACGAGGTGCTGGATGTGCTGTTGAAGAAGCCGAACTTTGAGTACCTGG
AGGTTAATGGCTCGCACCATGTGCACATGAACGATCCAGAGGCCATCATT
GCACCGGTCAACAACTTTATCCAGCGCTTCGGACCGGCGGCAGCGGCTGC
ATCCCGCCAGAAGGCCAAGGAGGCGAAGGAGAGCAAGCTTGCAAGCTTTC
TAGACCAT
BO17952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RA | 1077 | CG11309-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
CG11309-RF | 1047 | CG11309-PF | 102..1044 | 148..1090 | 4715 | 100 | Plus |
CG11309-RE | 1047 | CG11309-PE | 102..1044 | 148..1090 | 4715 | 100 | Plus |
CG11309-RF | 1047 | CG11309-PF | 1..102 | 17..118 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RA | 1664 | CG11309-RA | 259..1332 | 17..1090 | 5370 | 100 | Plus |
CG11309-RF | 2125 | CG11309-RF | 360..1302 | 148..1090 | 4715 | 100 | Plus |
CG11309-RE | 1206 | CG11309-RE | 136..1078 | 148..1090 | 4715 | 100 | Plus |
CG11309-RF | 2125 | CG11309-RF | 259..360 | 17..118 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302608..21303549 | 1090..149 | 4710 | 100 | Minus |
3L | 28110227 | 3L | 21303910..21304011 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 21305088..21305198 | 158..268 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:11:42 has no hits.
BO17952.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:26 Download gff for
BO17952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 1..1077 | 17..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:59 Download gff for
BO17952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 251..1332 | 14..1096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:35 Download gff for
BO17952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 259..1332 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:26 Download gff for
BO17952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 251..1332 | 14..1096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:55 Download gff for
BO17952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RA | 259..1332 | 17..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:55 Download gff for
BO17952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302606..21303549 | 149..1092 | 99 | <- | Minus |
3L | 21303808..21303837 | 119..148 | 100 | <- | Minus |
3L | 21303910..21304011 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:35 Download gff for
BO17952.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295706..21296649 | 149..1092 | 99 | <- | Minus |
arm_3L | 21296908..21296937 | 119..148 | 100 | <- | Minus |
arm_3L | 21297010..21297111 | 17..118 | 100 | | Minus |
BO17952.pep Sequence
Translation from 16 to 1108
> BO17952.pep
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPRANIWCSKKYFAEISI
TVPWGHISGKWYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAID
LPGHGLSSRLPDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICF
VFAAVFPDKVDMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSK
NEPPSYTYDELIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCR
DRRLKFYNYAIGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLD
VLLKKPNFEYLEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKA
KEAKESKLASFLDH
BO17952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PA | 358 | CG11309-PA | 1..358 | 1..358 | 1924 | 100 | Plus |
CG11309-PF | 348 | CG11309-PF | 1..348 | 1..358 | 1843 | 97.2 | Plus |
CG11309-PE | 348 | CG11309-PE | 1..348 | 1..358 | 1843 | 97.2 | Plus |
CG11309-PD | 348 | CG11309-PD | 1..348 | 1..358 | 1843 | 97.2 | Plus |
CG11309-PC | 348 | CG11309-PC | 1..348 | 1..358 | 1843 | 97.2 | Plus |