Clone BO17952 Report

Search the DGRC for BO17952

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG11309-RA
Protein status:BO17952.pep: validated full length
Sequenced Size:1108

Clone Sequence Records

BO17952.3prime Sequence

692 bp (646 high quality bases) assembled on 2006-10-13

> BO17952.3prime
ATGGTCTAGAAAGCTTGCAAGCTTGCTCTCCTTCGCCTCCTTGGCCTTCT
GGCGGGATGCAGCCGCTGCCGCCGGTCCGAAGCGCTGGATAAAGTTGTTG
ACCGGTGCAATGATGGCCTCTGGATCGTTCATGTGCACATGGTGCGAGCC
ATTAACCTCCAGGTACTCAAAGTTCGGCTTCTTCAACAGCACATCCAGCA
CCTCGTCGTAGTACTTCTTGTCCTCGAAATACGAGGACTGGGCGGCCTTG
ATGAACAAGTAAGGACATGTAATCCGATTGGCCATTTCCACACACAGCTC
CTGGGACCCGATGGCATAGTTGTAAAACTTGAGACGCCTATCGCGGCAGA
AGAAGTACTTGTCCGGGTACTTCTCCGACTTGCCGATGTTGCGAGCCATT
AAATGCTTGCAGTGCTCCTTGTTCACCGAATGGAAGGTGCCGATATAGAC
CCTCTCAATAAGTTCATCGTAGGTGTAGCTCGGCGGCTCGTTCTTACTCC
GGTTCCTTTCGTCTTCACGCAAGAACTCGTCCAAACGGGTTTCCATGGTC
CTAATAACCGACGGATACGGACGCTGATGAGGTTTCAGGGCATCAATCCC
AATGATCATGTCCACCTTGTCCGGAAAGACCGCGGCGAAAACAAAGCAAA
TAATGGACGACATTGAGTGTCCCACCAGGGACACTTTCTCCC

BO17952.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PB 1047 CG11309-RB 371..1044 692..19 3345 99.8 Minus
CG11309-PA 1077 CG11309-RA 401..1074 692..19 3345 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RF 2125 CG11309-RF 629..1302 692..19 3355 99.9 Minus
CG11309-RE 1206 CG11309-RE 405..1078 692..19 3355 99.9 Minus
CG11309-RD 1536 CG11309-RD 531..1204 692..19 3355 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302608..21303281 19..692 3355 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 09:05:56 has no hits.

BO17952.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:52 Download gff for BO17952.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-PA 401..1077 18..692 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:39 Download gff for BO17952.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RC 501..1179 13..692 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:32 Download gff for BO17952.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RD 531..1209 13..692 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:32 Download gff for BO17952.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21302603..21303281 13..692 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:39 Download gff for BO17952.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295703..21296381 13..692 99   Plus

BO17952.5prime Sequence

809 bp (680 high quality bases) assembled on 2006-10-13

> BO17952.5prime
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCCGTGCAAACATATGGTGCTCTAAAAAATACTT
CGCCGAGATCAGCATTACGGTTCCATGGGGGCACATATCCGGCAAGTGGT
ACGGTCCGCAGAACGTCCAACCAATTTTAGGACTGCACGGGTGGCAGGAT
AATGCGGGAACCTTTGATCGCCTGATGCCGCTGCTGTCGCCGGACGTGGC
ATTCCTCGCGATCGATCTTCCTGGTCACGGGCTATCGTCCCGACTGCCTG
ATGGCTGCTACTACAACTCCGTGGATAATCTGTATGTGATCCGCCTGATC
ATGAAGCAGTACAAGTGGGAGAAAGTGTCCCTGGTTGGACACTCAATGTC
GTCCATTATTTGCTTTGTTTTCGCCGCGGTCTTTCCGGACAAGGTGGACA
TGATCATTGGGATTGATGCCCTGAAACCTCATCAGCGTCCGTATCCGTCG
GTTATTAGGACCATGGAAACCCGTTTGGACGAGTTCTTGCGTGAAGACGA
AAGGAACCGGAGTAAGAACGAGCCGCCGAGCTACACCTACGATGAACTTA
TTGAGAGGGTCTATATCGGCACCTTCCATTCGGTGAACAAGGAGCACTGC
AAGCATTTAATGGCTCGCAACATCGGCAAGTCGGAGAAGTACCCGGACAA
GTACTTCTTCTGCCGCGATAGGCGTCTCAAGTTTTACAACTATGCCATCG
GGGTCCCAG

BO17952.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PA 1077 CG11309-RA 1..786 17..802 3930 100 Plus
CG11309-PB 1047 CG11309-RB 102..756 148..802 3275 100 Plus
CG11309-PB 1047 CG11309-RB 1..102 17..118 510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RA 1664 CG11309-RA 259..1050 17..809 3940 99.9 Plus
CG11309-RF 2125 CG11309-RF 360..1020 148..809 3285 99.8 Plus
CG11309-RE 1206 CG11309-RE 136..796 148..809 3285 99.8 Plus
CG11309-RF 2125 CG11309-RF 259..360 17..118 510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302896..21303549 802..149 3270 100 Minus
3L 28110227 3L 21303910..21304011 118..17 510 100 Minus
3L 28110227 3L 21305088..21305198 158..268 210 79.3 Plus
Blast to na_te.dros performed on 2015-02-10 15:49:57 has no hits.

BO17952.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:53 Download gff for BO17952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-PA 1..792 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:54 Download gff for BO17952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 256..1050 14..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:48 Download gff for BO17952.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 256..1050 14..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:48 Download gff for BO17952.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21302890..21303549 149..809 99 <- Minus
3L 21303808..21303837 119..148 100 <- Minus
3L 21303910..21304014 14..118 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:54 Download gff for BO17952.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295990..21296649 149..809 99 <- Minus
arm_3L 21296908..21296937 119..148 100 <- Minus
arm_3L 21297010..21297114 14..118 99   Minus

BO17952.complete Sequence

1108 bp assembled on 2006-10-11

GenBank Submission: FJ634263

> BO17952.complete
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCCGTGCAAACATATGGTGCTCTAAAAAATACTT
CGCCGAGATCAGCATTACGGTTCCATGGGGGCACATATCCGGCAAGTGGT
ACGGTCCGCAGAACGTCCAACCAATTTTAGGACTGCACGGGTGGCAGGAT
AATGCGGGAACCTTTGATCGCCTGATGCCGCTGCTGTCGCCGGACGTGGC
ATTCCTCGCGATCGATCTTCCTGGTCACGGGCTATCGTCCCGACTGCCTG
ATGGCTGCTACTACAACTCCGTGGATAATCTGTATGTGATCCGCCTGATC
ATGAAGCAGTACAAGTGGGAGAAAGTGTCCCTGGTTGGACACTCAATGTC
GTCCATTATTTGCTTTGTTTTCGCCGCGGTCTTTCCGGACAAGGTGGACA
TGATCATTGGGATTGATGCCCTGAAACCTCATCAGCGTCCGTATCCGTCG
GTTATTAGGACCATGGAAACCCGTTTGGACGAGTTCTTGCGTGAAGACGA
AAGGAACCGGAGTAAGAACGAGCCGCCGAGCTACACCTACGATGAACTTA
TTGAGAGGGTCTATATCGGCACCTTCCATTCGGTGAACAAGGAGCACTGC
AAGCATTTAATGGCTCGCAACATCGGCAAGTCGGAGAAGTACCCGGACAA
GTACTTCTTCTGCCGCGATAGGCGTCTCAAGTTTTACAACTATGCCATCG
GGTCCCAGGAGCTGTGTGTGGAAATGGCCAATCGGATTACATGTCCTTAC
TTGTTCATCAAGGCCGCCCAGTCCTCGTATTTCGAGGACAAGAAGTACTA
CGACGAGGTGCTGGATGTGCTGTTGAAGAAGCCGAACTTTGAGTACCTGG
AGGTTAATGGCTCGCACCATGTGCACATGAACGATCCAGAGGCCATCATT
GCACCGGTCAACAACTTTATCCAGCGCTTCGGACCGGCGGCAGCGGCTGC
ATCCCGCCAGAAGGCCAAGGAGGCGAAGGAGAGCAAGCTTGCAAGCTTTC
TAGACCAT

BO17952.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RA 1077 CG11309-PA 1..1074 17..1090 5370 100 Plus
CG11309-RF 1047 CG11309-PF 102..1044 148..1090 4715 100 Plus
CG11309-RE 1047 CG11309-PE 102..1044 148..1090 4715 100 Plus
CG11309-RF 1047 CG11309-PF 1..102 17..118 510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RA 1664 CG11309-RA 259..1332 17..1090 5370 100 Plus
CG11309-RF 2125 CG11309-RF 360..1302 148..1090 4715 100 Plus
CG11309-RE 1206 CG11309-RE 136..1078 148..1090 4715 100 Plus
CG11309-RF 2125 CG11309-RF 259..360 17..118 510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302608..21303549 1090..149 4710 100 Minus
3L 28110227 3L 21303910..21304011 118..17 510 100 Minus
3L 28110227 3L 21305088..21305198 158..268 210 79.3 Plus
Blast to na_te.dros performed on 2014-11-27 08:11:42 has no hits.

BO17952.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:26 Download gff for BO17952.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 1..1077 17..1091 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:59 Download gff for BO17952.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 251..1332 14..1096 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:35 Download gff for BO17952.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 259..1332 17..1092 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:26 Download gff for BO17952.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 251..1332 14..1096 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:55 Download gff for BO17952.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 259..1332 17..1092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:55 Download gff for BO17952.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21302606..21303549 149..1092 99 <- Minus
3L 21303808..21303837 119..148 100 <- Minus
3L 21303910..21304011 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:35 Download gff for BO17952.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295706..21296649 149..1092 99 <- Minus
arm_3L 21296908..21296937 119..148 100 <- Minus
arm_3L 21297010..21297111 17..118 100   Minus

BO17952.pep Sequence

Translation from 16 to 1108

> BO17952.pep
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPRANIWCSKKYFAEISI
TVPWGHISGKWYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAID
LPGHGLSSRLPDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICF
VFAAVFPDKVDMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSK
NEPPSYTYDELIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCR
DRRLKFYNYAIGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLD
VLLKKPNFEYLEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKA
KEAKESKLASFLDH

BO17952.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PA 358 CG11309-PA 1..358 1..358 1924 100 Plus
CG11309-PF 348 CG11309-PF 1..348 1..358 1843 97.2 Plus
CG11309-PE 348 CG11309-PE 1..348 1..358 1843 97.2 Plus
CG11309-PD 348 CG11309-PD 1..348 1..358 1843 97.2 Plus
CG11309-PC 348 CG11309-PC 1..348 1..358 1843 97.2 Plus