Clone BO17956 Report

Search the DGRC for BO17956

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG6227-RA
Protein status:BO17956.pep: validated full length
Sequenced Size:3706

Clone Sequence Records

BO17956.3prime Sequence

814 bp (693 high quality bases) assembled on 2006-10-13

> BO17956.3prime
ATGGTCTAGAAAGCTTGCGACCACCTTGTAGCGACCCTTGTTAAAGACAT
GATGAGCGGAGCTGAGCTTGAGCAGCTCCTCCTTGATTAGCCGCGTGATC
TCGCGCTTGGCCTTCTGCACGGCCAGTTCACTGCAGCTCTCGATGGCGAG
GTAGAGTTTGCGCTCGCCATCCGGCGGATTCTTGCCCTGCGGCACATATG
TGCCACGTACGGTGAGACCTGCCTCCGAGTACTCAGAGATCTGAGCGAGT
GCCTCCTTGGACGTGACCTTCCATCGCGCTTGCTGCGGGAAATCGTTAAT
CTCCAGTTCCTCCTCGTATTTGGTAAACGGGTTGGTTGTGCCACCCACCA
GCGGGCCCAGTCCTTCCTCATCCTCTTTGGGCTGATAGTTCAGTTTGTTG
TTCAACTTGGCGGCCATCTGCTCGGCCACCGTGCGAGCGGTCAGCAGGGT
CGCGGCAGCTCCCGTGACATGCGGTCCCTTGATCATGGGCTCCACAGTGA
CCACGCTGCCCTTGGTGTCCAGGTTCTTGCTGCTGTTGATCTTGGAGGCC
AATCGTTTGGCTAGCTCCAGCTTATCAGAGCTTAGAGCACCGCCCATGGC
CACACTTGGAGCTCCACCCGCGGCTGCGGGCGCCGAAGCCGCAGCAATGG
CAATATTGGCAGCAGCCGCAGCTGCCGCCGCTTGAGCCGCCGCCGAGGCC
AGTGCCGGATTAGCTCCAGAAACTGCCGCAGCTGCGGCTGCAGCCGCAGC
AGCTGCTGCCGCCGCGGCTGTGGCCGCGGCCGATGTATCCTTACCCGTGC
GCTTGGCCGCAAAG

BO17956.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-PA 3675 CG6227-RA 2877..3672 814..19 3955 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-RA 4251 CG6227-RA 3114..3909 814..19 3965 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15348884..15349679 814..19 3965 99.9 Minus
Blast to na_te.dros performed 2015-02-12 16:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10445..10581 766..633 129 58.3 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6029..6094 605..670 123 65.2 Plus
TART-C 11124 TART-C TARTC 11124bp 7484..7547 605..668 113 64.1 Plus

BO17956.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:55 Download gff for BO17956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-PA 2877..3675 18..814 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:03:19 Download gff for BO17956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 3114..3909 19..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:20 Download gff for BO17956.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 3114..3909 19..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:20 Download gff for BO17956.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15348884..15349679 19..814 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:03:19 Download gff for BO17956.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15242917..15243712 19..814 99   Minus

BO17956.5prime Sequence

839 bp (688 high quality bases) assembled on 2006-10-13

> BO17956.5prime
GAAGTTATCAGTCGACATGTCGAAAAGTTCCGGGCGCGATCGAGACAGGG
AGCGCGACCGGGAGAGAGAGAGGGAGCGCGACCGTGAGAGAGAGCGCGAC
AGGGATCGTGAGCGGGACAACCGGCACGACAGTCGCAGTCGCGACTATGA
TATGGGCAAGTCCAGGAACGGTGGAGGCGGCGGAGCCGGTGGTGGCTCCC
GGAACATGCGCGAAGACCGGAAGCGCGGAAAGGACATGATCAGCGATCGT
GGAAAACGCGACGATAAGCGGAGGAAGTGCTCCAGGTCAAAGGATTACGA
GAAGGACAATTCGCCCCACTACAGGCGTCTGGACAAGGATCGTGACCGTG
ATCGGGATCGCGATCGGCAGCGAGAGAAGGAACGAGAGCGCGAGAAGGAA
AAGGAGCGCGAGAAGGAAAAGGAGCGCGAGCGGGACAAGGATCGGGAGCG
AGATCGCCAGCGAGAAAAGGAATCCGATAGCAGACGAGCGGCCGCAGCTG
CTCCGCTGATTATACCATTGCTCTCGACCAGCTGCTCCGAAGAGGAGGTG
GAGGAGATCGACAAGGAGGAGCAGCAGCGTCGTCTGGAGCAAGAGATGAT
TAAGCGGCGCGAGCGAATCGAACGTTGGCGCGCGGAACGCAAGCGGGACA
CTAAGGCGGCTGTCGTGGCGCCGTCGCTGGTCAATTCCGCAAAGAAATGG
AGTCTGGAGGACGAGTCTGAGGAGGACGACAGCAATCCCGCTCCGCCGCT
GGACAGTGGGAAAAAGGACGCCGAACCGGACTCGCCGCCTTCAAAATTCC
ACAGCATACGCAAGCGCTTCGACGATGACGTGGTCGAGT

BO17956.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-PA 3675 CG6227-RA 1..823 17..839 4115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-RA 4251 CG6227-RA 237..1060 16..839 4120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15346098..15346627 310..839 2650 100 Plus
X 23542271 X 15345487..15345763 33..309 1385 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:09:39 has no hits.

BO17956.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:57 Download gff for BO17956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-PA 1..823 17..839 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:24:07 Download gff for BO17956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 232..1060 10..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:34 Download gff for BO17956.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 232..1060 10..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:34 Download gff for BO17956.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15345400..15345422 10..33 91 -> Plus
X 15345488..15345763 34..309 100 -> Plus
X 15346098..15346627 310..839 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:24:07 Download gff for BO17956.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15239433..15239455 10..33 91 -> Plus
arm_X 15239521..15239796 34..309 100 -> Plus
arm_X 15240131..15240660 310..839 100   Plus

BO17956.complete Sequence

3706 bp assembled on 2007-03-23

GenBank Submission: FJ634264

> BO17956.complete
GAAGTTATCAGTCGACATGTCGAAAAGTTCCGGGCGCGATCGAGACAGGG
AGCGCGACCGGGAGAGAGAGAGGGAGCGCGACCGTGAGAGAGAGCGCGAC
AGGGATCGTGAGCGGGACAACCGGCACGACAGTCGCAGTCGCGACTATGA
TATGGGCAAGTCCAGGAACGGTGGAGGCGGCGGAGCCGGTGGTGGCTCCC
GGAACATGCGCGAAGACCGGAAGCGCGGAAAGGACATGATCAGCGATCGT
GGAAAACGCGACGATAAGCGGAGGAAGTGCTCCAGGTCAAAGGATTACGA
GAAGGACAATTCGCCCCACTACAGGCGTCTGGACAAGGATCGTGACCGTG
ATCGGGATCGCGATCGGCAGCGAGAGAAGGAACGAGAGCGCGAGAAGGAA
AAGGAGCGCGAGAAGGAAAAGGAGCGCGAGCGGGACAAGGATCGGGAGCG
AGATCGCCAGCGAGAAAAGGAATCCGATAGCAGACGAGCGGCCGCAGCTG
CTCCGCTGATTATACCATTGCTCTCGACCAGCTGCTCCGAAGAGGAGGTG
GAGGAGATCGACAAGGAGGAGCAGCAGCGTCGTCTGGAGCAAGAGATGAT
TAAGCGGCGCGAGCGAATCGAACGTTGGCGCGCGGAACGCAAGCGGGACA
CTAAGGCGGCTGTCGTGGCGCCGTCGCTGGTCAATTCCGCAAAGAAATGG
AGTCTGGAGGACGAGTCTGAGGAGGACGACAGCAATCCCGCTCCGCCGCT
GGACAGTGGGAAAAAGGACGCCGAACCGGACTCGCCGCCTTCAAAATTCC
ACAGCATACGCAAGCGCTTCGACGATGACGTGGTCGAGTCGAAGTTCTCG
CCCGTTAAGCGTCCCACCTTTAGCAAATCATTTGGCAAATTGGGCATTGG
CCTGGCCACCAAAGCCGAGGCGGATATCAAGAAGGAGCCACCGCCGGTGG
ACACCAAAAAGGAGATCAAAAAGAAGCCCGAACCAGTAGCGGCCAAAATG
GAGATCGTTGAAGAGCCCACCGTCGCAGCAGGGGAGAAGACCAAGAAGGA
GCCGGAACAGCCGCATGTGGGTGCTAAATCGGAGCCGGAAGTGGAAGACA
AGCCGCAACCCGAAGCCGAGCCAGAAGACGAAATCGATCCACTGGATGCC
TACATGCAGGAGGTCAACAACGAGATGCGGCGTGTGAACAATTTTGTCAA
TCCACCCGCCAAATCGCAGGGTGTCGTGATCCTCACGGGAGTGGCCAAAA
AGAAGACGACGACGTTGAAGAAGGGCGAGGTGATAGAACAAAATATGGAC
AGCTTGGAGTACTCTAGCGAGGACGAACTGGAGGACATACGTGACACGGC
CGTTAATCTGGCGATGAAGCACCGCAAGGAGCTGGCCAAGATTGATCATT
CCTCGGTTACGTATGCGCCCTTCCGCAAGAACTTCTATGTCGAGGTGCCG
GAACTGACTCGCATGACGGCCGCCGATGTGGAGAAGTACCGCTCCGACCT
TGAGGGCATCCAGGTTAAGGGCAAGGGCTGTCCAAAGCCCATTAAGACTT
GGGCACAGTGCGGCGTCAGCAAGAAAGAGATGGAAGTGCTGCGACGGCTG
GGCTTCGAGAAGCCCACGCCCATCCAGTGCCAGGCCATACCGGCCATCAT
GTCCGGACGGGATCTGATAGGTATTGCTAAAACTGGCAGTGGCAAGACGT
TGGCATTCATTTTACCAATGTTTAGGCATATTTTGGACCAGCCGAGCATG
GAGGATGGCGACGGCGCTATCGCTATCATTATGGCGCCAACTCGCGAACT
CTGCATGCAGATCGGCAAGGACATCCGCAAGTTTAGCAAGTCGCTCGGCC
TGCGGCCAGTTTGTGTGTACGGCGGCACGGGGATCTCTGAGCAAATTGCC
GAGCTGAAGCGTGGCGCCGAGATAATTGTATGCACGCCTGGCCGCATGAT
CGACATGCTGGCGGCGAATTCTGGACGTGTGACGAACCTGCGTCGCGTCA
CCTATGTCGTCTTGGACGAGGCAGATCGCATGTTCGACATGGGCTTCGAG
CCGCAGGTGATGCGCATCATCGATAACGTGCGACCGGATCGCCAGACGGT
CATGTTTAGCGCTACGTTTCCACGGCAAATGGAGGCGTTAGCCAGACGCA
TACTTAAGAAACCCATCGAGGTGATCGTCGGCGGTCGGTCGGTGGTGTGC
AAAGAAGTCGAACAGCACGTAGTCATTCTCAACGACGATGCCAAGTTCTT
CAAGCTGTTGGAGCTGCTAGGCATATACCAGGAGGCGGGCAGCATCATTG
TGTTTGTCGATAAGCAGGAGAACGCTGACATCCTGCTGCGCGACCTTATG
AAGGCATCGTATCCGTGCATGAGCCTGCACGGCGGCATCGATCAGTTCGA
TCGCGACTCCACCATTATCGACTTCAAGTCGGGCAAGGTGCGCCTACTGA
TTGCCACCTCGGTGGCGGCGCGCGGTTTGGATGTTAAGGATCTCATACTG
GTGGTCAACTACGATGTGCCCAACCACTACGAGGACTATGTTCACAGATG
TGGTCGCACCGGTCGAGCGGGCAAAAAGGGCAGCGCCTACACGTTTATCA
CACCGGAGCAATCGCGCTATGCCGGCGACATTATCCGCGCCATGGACCTA
TCAGGCACACTGATTCCCGCCGAGCTGCAGGCACTGTGGACGGAGTATAA
GGCGCTCCAGGAGGCCGAGGGCAAGACGGTGCACACGGGCGGCGGCTTTA
GCGGCAAGGGCTTCAAGTTCGACGAGCAGGAGTTCAATGCCGCCAAGGAG
AGCAAGAAGCTGCAGAAGGCGGCCTTGGGACTGGCCGATTCCGATGATGA
GGAGGACATCGAGCAGGATATTGACCAGCAGATTGAGCAAATCTTTGCGG
CCAAGCGCACGGTTAAGGATACATCGGCCGCGGCCACAGCCGCGGCGGCA
GCAGCTGCTGCGGCTGCAGCCGCAGCTGCGGCAGTTTCTGGAGCTAATCC
GGCACTGGCCTCGGCGGCGGCTCAAGCGGCGGCAGCTGCGGCTGCTGCCA
ATATTGCCATTGCTGCGGCTTCGGCGCCCGCAGCCGCGGGTGGAGCTCCA
AGTGTGGCCATGGGCGGTGCTCTAAGCTCTGATAAGCTGGAGCTAGCCAA
ACGATTGGCCTCCAAGATCAACAGCAGCAAGAACCTGGACACCAAGGGCA
GCGTGGTCACTGTGGAGCCCATGATCAAGGGACCGCATGTCACGGGAGCT
GCCGCGACCCTGCTGACCGCTCGCACGGTGGCCGAGCAGATGGCCGCCAA
GTTGAACAACAAACTGAACTATCAGCCCAAAGAGGATGAGGAAGGACTGG
GCCCGCTGGTGGGTGGCACAACCAACCCGTTTACCAAATACGAGGAGGAA
CTGGAGATTAACGATTTCCCGCAGCAAGCGCGATGGAAGGTCACGTCCAA
GGAGGCACTCGCTCAGATCTCTGAGTACTCGGAGGCAGGTCTCACCGTAC
GTGGCACATATGTGCCGCAGGGCAAGAATCCGCCGGATGGCGAGCGCAAA
CTCTACCTCGCCATCGAGAGCTGCAGTGAACTGGCCGTGCAGAAGGCCAA
GCGCGAGATCACGCGGCTAATCAAGGAGGAGCTGCTCAAGCTCAGCTCCG
CTCATCATGTCTTTAACAAGGGTCGCTACAAGGTGGTCGCAAGCTTTCTA
GACCAT

BO17956.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-RA 3675 CG6227-PA 1..3672 17..3688 18360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-RA 4251 CG6227-RA 237..3909 16..3688 18365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15346098..15347334 310..1546 6185 100 Plus
X 23542271 X 15348534..15349679 2543..3688 5730 100 Plus
X 23542271 X 15347474..15348476 1545..2547 5015 100 Plus
X 23542271 X 15345487..15345763 33..309 1385 100 Plus
Blast to na_te.dros performed 2014-11-27 10:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10445..10581 2941..3074 129 58.3 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6029..6094 3102..3037 123 65.2 Minus

BO17956.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:59 Download gff for BO17956.complete
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 1..3675 17..3689 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:19 Download gff for BO17956.complete
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 282..3959 10..3688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:54 Download gff for BO17956.complete
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 238..3909 17..3690 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:00 Download gff for BO17956.complete
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 282..3959 10..3688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:20 Download gff for BO17956.complete
Subject Subject Range Query Range Percent Splice Strand
CG6227-RA 238..3909 17..3690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:20 Download gff for BO17956.complete
Subject Subject Range Query Range Percent Splice Strand
X 15345406..15345422 17..33 100 -> Plus
X 15345488..15345763 34..309 100 -> Plus
X 15346098..15347334 310..1546 100 -> Plus
X 15347476..15348476 1547..2547 100 -> Plus
X 15348539..15349679 2548..3690 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:54 Download gff for BO17956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15239439..15239455 17..33 100 -> Plus
arm_X 15239521..15239796 34..309 100 -> Plus
arm_X 15240131..15241367 310..1546 100 -> Plus
arm_X 15241509..15242509 1547..2547 100 -> Plus
arm_X 15242572..15243712 2548..3690 99   Plus

BO17956.pep Sequence

Translation from 16 to 3706

> BO17956.pep
MSKSSGRDRDRERDRERERERDRERERDRDRERDNRHDSRSRDYDMGKSR
NGGGGGAGGGSRNMREDRKRGKDMISDRGKRDDKRRKCSRSKDYEKDNSP
HYRRLDKDRDRDRDRDRQREKEREREKEKEREKEKERERDKDRERDRQRE
KESDSRRAAAAAPLIIPLLSTSCSEEEVEEIDKEEQQRRLEQEMIKRRER
IERWRAERKRDTKAAVVAPSLVNSAKKWSLEDESEEDDSNPAPPLDSGKK
DAEPDSPPSKFHSIRKRFDDDVVESKFSPVKRPTFSKSFGKLGIGLATKA
EADIKKEPPPVDTKKEIKKKPEPVAAKMEIVEEPTVAAGEKTKKEPEQPH
VGAKSEPEVEDKPQPEAEPEDEIDPLDAYMQEVNNEMRRVNNFVNPPAKS
QGVVILTGVAKKKTTTLKKGEVIEQNMDSLEYSSEDELEDIRDTAVNLAM
KHRKELAKIDHSSVTYAPFRKNFYVEVPELTRMTAADVEKYRSDLEGIQV
KGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDL
IGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTRELCMQIG
KDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAA
NSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT
FPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLEL
LGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTI
IDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGR
AGKKGSAYTFITPEQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEA
EGKTVHTGGGFSGKGFKFDEQEFNAAKESKKLQKAALGLADSDDEEDIEQ
DIDQQIEQIFAAKRTVKDTSAAATAAAAAAAAAAAAAAAVSGANPALASA
AAQAAAAAAAANIAIAAASAPAAAGGAPSVAMGGALSSDKLELAKRLASK
INSSKNLDTKGSVVTVEPMIKGPHVTGAAATLLTARTVAEQMAAKLNNKL
NYQPKEDEEGLGPLVGGTTNPFTKYEEELEINDFPQQARWKVTSKEALAQ
ISEYSEAGLTVRGTYVPQGKNPPDGERKLYLAIESCSELAVQKAKREITR
LIKEELLKLSSAHHVFNKGRYKVVASFLDH

BO17956.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6227-PA 1224 CG6227-PA 1..1224 1..1224 6219 100 Plus
CG6418-PB 791 CG6418-PB 98..680 340..915 1041 38.1 Plus
CG7878-PA 703 CG7878-PA 230..687 468..918 914 41.5 Plus
Rm62-PH 575 CG10279-PH 90..549 459..917 883 41.2 Plus
Rm62-PD 575 CG10279-PD 90..549 459..917 883 41.2 Plus