Clone Sequence Records
BO17960.3prime Sequence
782 bp (730 high quality bases) assembled on 2006-10-13
> BO17960.3prime
ATGGTCTAGAAAGCTTGCGGTATCAATGGCCTGGTCATCGTTGTCATCCT
CCGGCTCATGGCCACGTCCCTCGCGAATTCGCTTCAATTTGCGCTTAAGC
ATCATGACGCATTTTATGGCCTGAAAGGTTTTGGCCGAGGCCGAACTGGT
TTCGGAGGGCAGCGAATTGGACGTGGTTCTAATGTGTGCCAGCTTTACCT
CCAAATAGGCCTTCTTCAGTGTCTTGTAGTGCCGGAACTCACTGGTGTCC
TTGACCAGGATGCACTTAGCCGCCGATCCCTCGCCCGAACAATCCGACGG
CGCTGTGTGATATATCTGATGGTAGAAGTATTGCAGCACCGGCGAGTTCC
AAATGGAGAGGCCGTACCACAACCAAATGGGCACATTCAGGGAAAGCTTA
AAGTTCTTGGCGAACAGCGTGGGTATGAAGTACTTAAAGGGCAGTAGGTT
GACAAACACATACGCCCACACCATGATGCGCAGACCGAGGAAAACCTGGT
AGATGATCCGGTGTGAATTGGTGCTGGGCAGGACCAACAGGGCTAGCACC
TCGGTGAGTATGCTGTACAGACCCACCGTTAGATTCAGGCCCACAAAGTA
GTTTTCGTACCTGTAAACATCGATGGCGACGAGGGACAGCAGGTAGAGTC
CCTTGGAGCCCACCTCCAGGAAGTCAGCGTCCTTGAAGTCCAACCACGCC
CCATGCAGGTAGAACGTGATAATGAAGATCGAGTAGAACTGAAACTTTTC
CGCCTGATGAGATCGATAGAAGATCAGGTTCT
BO17960.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-PA | 1149 | CG1636-RA | 383..1146 | 782..19 | 3820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-RC | 1343 | CG1636-RC | 519..1282 | 782..19 | 3820 | 100 | Minus |
CG1636-RA | 2124 | CG1636-RA | 519..1282 | 782..19 | 3820 | 100 | Minus |
CG1636-RB | 2325 | CG1636-RB | 686..1234 | 567..19 | 2745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8274707..8275209 | 612..110 | 2515 | 100 | Minus |
X | 23542271 | X | 8274455..8274627 | 782..610 | 865 | 100 | Minus |
X | 23542271 | X | 8275268..8275359 | 110..19 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:01:31 has no hits.
BO17960.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:58 Download gff for
BO17960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-PA | 383..1149 | 15..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:01 Download gff for
BO17960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 519..1285 | 15..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:16 Download gff for
BO17960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 519..1285 | 15..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:16 Download gff for
BO17960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8274455..8274626 | 611..782 | 100 | -> | Minus |
X | 8274709..8275208 | 111..610 | 100 | -> | Minus |
X | 8275268..8275362 | 15..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:01 Download gff for
BO17960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8168488..8168659 | 611..782 | 100 | -> | Minus |
arm_X | 8168742..8169241 | 111..610 | 100 | -> | Minus |
arm_X | 8169301..8169395 | 15..110 | 97 | | Minus |
BO17960.5prime Sequence
823 bp (777 high quality bases) assembled on 2006-10-13
> BO17960.5prime
GAAGTTATCAGTCGACATGACCTCCATTCTGGACATGAAGGCCGGTCCGC
CCGACTACTGGGCGGAGATCAGCAACTTCTTTCTGCCGCTGAAATACCTG
ATCACCAACGACCGCTTCGATTCGATGGTGCGGGACATAGACCTCTATTA
CCTGATCAACGGGGTCTTTTGGATATTCGTGGCGTTGTCTTGCGGCTACT
ACGCCTTCCAGCGGCTCTTCCAGTTCTTTCTGAAGTCGTCGAGCATGAAG
CACTTTCAGCGGAGGCTGTTCGCCCGCGTCATTTGGAACATCGCCTTCTA
TGCGGCCAGCTGCCTGTTCCTGCACTTCTACAACGAGTTCATGATCCTGC
CGCAGCTGATGAAGAACCAAGGACGCTACTCGCTCTTCTACTCCTCGGAG
AACCTGATCTTCTATCGATCTCATCAGGCGGAAAAGTTTCAGTTCTACTC
GATCTTCATTATCACGTTCTACCTGCATGGGGCGTGGTTGGACTTCAAGG
ACGCTGACTTCCTGGAGGTGGGCTCCAAGGGACTCTACCTGCTGTCCCTC
GTCGCCATCGATGTTTACAGGTACGAAAACTACTTTGTGGGCCTGAATCT
AACGGTGGGTCTGTACAGCATACTCACCGAGGTGCTAGCCCTGTTGGTCC
TGCCCAGCACCAATTCACACCGGATCATCTACCANGTTTTCCTCGGTCTG
CGCATCATGGTGTGGGCGTATGTGTTTGTCAACCTACTGCCCTTTAAGTA
CTTCATACCCACGCTGTTCGCCAAGAACTTTAAGCTTTCCCTGAATTGTG
CCATTTGGTTGTGGTACGGCCTC
BO17960.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-PA | 1149 | CG1636-RA | 1..780 | 17..796 | 3881 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-RC | 1343 | CG1636-RC | 136..943 | 16..823 | 3984 | 99.6 | Plus |
CG1636-RA | 2124 | CG1636-RA | 136..943 | 16..823 | 3984 | 99.6 | Plus |
CG1636-RB | 2325 | CG1636-RB | 136..690 | 16..570 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8274277..8274627 | 221..571 | 1755 | 100 | Plus |
X | 23542271 | X | 8274707..8274961 | 569..823 | 1204 | 98 | Plus |
X | 23542271 | X | 8273547..8273754 | 16..223 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:16:19 has no hits.
BO17960.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:00 Download gff for
BO17960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:17 Download gff for
BO17960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 131..943 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:02 Download gff for
BO17960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 131..943 | 10..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:02 Download gff for
BO17960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8273542..8273754 | 10..223 | 98 | -> | Plus |
X | 8274280..8274626 | 224..570 | 100 | -> | Plus |
X | 8274709..8274961 | 571..823 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:17 Download gff for
BO17960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8167575..8167787 | 10..223 | 98 | -> | Plus |
arm_X | 8168313..8168659 | 224..570 | 100 | -> | Plus |
arm_X | 8168742..8168994 | 571..823 | 98 | | Plus |
BO17960.complete Sequence
1180 bp assembled on 2006-10-11
GenBank Submission: FJ634265
> BO17960.complete
GAAGTTATCAGTCGACATGACCTCCATTCTGGACATGAAGGCCGGTCCGC
CCGACTACTGGGCGGAGATCAGCAACTTCTTTCTGCCGCTGAAATACCTG
ATCACCAACGACCGCTTCGATTCGATGGTGCGGGACATAGACCTCTATTA
CCTGATCAACGGGGTCTTTTGGATATTCGTGGCGTTGTCTTGCGGCTACT
ACGCCTTCCAGCGGCTCTTCCAGTTCTTTCTGAAGTCGTCGAGCATGAAG
CACTTTCAGCGGAGGCTGTTCGCCCGCGTCATTTGGAACATCGCCTTCTA
TGCGGCCAGCTGCCTGTTCCTGCACTTCTACAACGAGTTCATGATCCTGC
CGCAGCTGATGAAGAACCAAGGACGCTACTCGCTCTTCTACTCCTCGGAG
AACCTGATCTTCTATCGATCTCATCAGGCGGAAAAGTTTCAGTTCTACTC
GATCTTCATTATCACGTTCTACCTGCATGGGGCGTGGTTGGACTTCAAGG
ACGCTGACTTCCTGGAGGTGGGCTCCAAGGGACTCTACCTGCTGTCCCTC
GTCGCCATCGATGTTTACAGGTACGAAAACTACTTTGTGGGCCTGAATCT
AACGGTGGGTCTGTACAGCATACTCACCGAGGTGCTAGCCCTGTTGGTCC
TGCCCAGCACCAATTCACACCGGATCATCTACCAGGTTTTCCTCGGTCTG
CGCATCATGGTGTGGGCGTATGTGTTTGTCAACCTACTGCCCTTTAAGTA
CTTCATACCCACGCTGTTCGCCAAGAACTTTAAGCTTTCCCTGAATGTGC
CCATTTGGTTGTGGTACGGCCTCTCCATTTGGAACTCGCCGGTGCTGCAA
TACTTCTACCATCAGATATATCACACAGCGCCGTCGGATTGTTCGGGCGA
GGGATCGGCGGCTAAGTGCATCCTGGTCAAGGACACCAGTGAGTTCCGGC
ACTACAAGACACTGAAGAAGGCCTATTTGGAGGTAAAGCTGGCACACATT
AGAACCACGTCCAATTCGCTGCCCTCCGAAACCAGTTCGGCCTCGGCCAA
AACCTTTCAGGCCATAAAATGCGTCATGATGCTTAAGCGCAAATTGAAGC
GAATTCGCGAGGGACGTGGCCATGAGCCGGAGGATGACAACGATGACCAG
GCCATTGATACCGCAAGCTTTCTAGACCAT
BO17960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-RC | 1149 | CG1636-PC | 1..1146 | 17..1162 | 5730 | 100 | Plus |
CG1636-RA | 1149 | CG1636-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
CG1636-RB | 1101 | CG1636-PB | 1..554 | 17..570 | 2770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-RC | 1343 | CG1636-RC | 136..1282 | 16..1162 | 5735 | 100 | Plus |
CG1636-RA | 2124 | CG1636-RA | 136..1282 | 16..1162 | 5735 | 100 | Plus |
CG1636-RB | 2325 | CG1636-RB | 136..690 | 16..570 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8274707..8275209 | 569..1071 | 2515 | 100 | Plus |
X | 23542271 | X | 8274277..8274627 | 221..571 | 1755 | 100 | Plus |
X | 23542271 | X | 8273547..8273754 | 16..223 | 1040 | 100 | Plus |
X | 23542271 | X | 8275268..8275359 | 1071..1162 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:52:51 has no hits.
BO17960.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:06 Download gff for
BO17960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 1..1149 | 17..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:31 Download gff for
BO17960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 126..1280 | 10..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:33 Download gff for
BO17960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 137..1282 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:06 Download gff for
BO17960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 126..1280 | 10..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:11 Download gff for
BO17960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1636-RA | 137..1282 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:11 Download gff for
BO17960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8274709..8275208 | 571..1070 | 100 | -> | Plus |
X | 8273548..8273754 | 17..223 | 100 | -> | Plus |
X | 8274280..8274626 | 224..570 | 100 | -> | Plus |
X | 8275268..8275359 | 1071..1164 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:33 Download gff for
BO17960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8167581..8167787 | 17..223 | 100 | -> | Plus |
arm_X | 8168313..8168659 | 224..570 | 100 | -> | Plus |
arm_X | 8168742..8169241 | 571..1070 | 100 | -> | Plus |
arm_X | 8169301..8169392 | 1071..1164 | 97 | | Plus |
BO17960.pep Sequence
Translation from 16 to 1180
> BO17960.pep
MTSILDMKAGPPDYWAEISNFFLPLKYLITNDRFDSMVRDIDLYYLINGV
FWIFVALSCGYYAFQRLFQFFLKSSSMKHFQRRLFARVIWNIAFYAASCL
FLHFYNEFMILPQLMKNQGRYSLFYSSENLIFYRSHQAEKFQFYSIFIIT
FYLHGAWLDFKDADFLEVGSKGLYLLSLVAIDVYRYENYFVGLNLTVGLY
SILTEVLALLVLPSTNSHRIIYQVFLGLRIMVWAYVFVNLLPFKYFIPTL
FAKNFKLSLNVPIWLWYGLSIWNSPVLQYFYHQIYHTAPSDCSGEGSAAK
CILVKDTSEFRHYKTLKKAYLEVKLAHIRTTSNSLPSETSSASAKTFQAI
KCVMMLKRKLKRIREGRGHEPEDDNDDQAIDTASFLDH
BO17960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1636-PC | 382 | CG1636-PC | 1..382 | 1..382 | 2017 | 100 | Plus |
CG1636-PA | 382 | CG1636-PA | 1..382 | 1..382 | 2017 | 100 | Plus |
CG1636-PB | 366 | CG1636-PB | 1..366 | 1..382 | 1904 | 95.8 | Plus |