Clone BO17960 Report

Search the DGRC for BO17960

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG1636-RA
Protein status:BO17960.pep: validated full length
Sequenced Size:1180

Clone Sequence Records

BO17960.3prime Sequence

782 bp (730 high quality bases) assembled on 2006-10-13

> BO17960.3prime
ATGGTCTAGAAAGCTTGCGGTATCAATGGCCTGGTCATCGTTGTCATCCT
CCGGCTCATGGCCACGTCCCTCGCGAATTCGCTTCAATTTGCGCTTAAGC
ATCATGACGCATTTTATGGCCTGAAAGGTTTTGGCCGAGGCCGAACTGGT
TTCGGAGGGCAGCGAATTGGACGTGGTTCTAATGTGTGCCAGCTTTACCT
CCAAATAGGCCTTCTTCAGTGTCTTGTAGTGCCGGAACTCACTGGTGTCC
TTGACCAGGATGCACTTAGCCGCCGATCCCTCGCCCGAACAATCCGACGG
CGCTGTGTGATATATCTGATGGTAGAAGTATTGCAGCACCGGCGAGTTCC
AAATGGAGAGGCCGTACCACAACCAAATGGGCACATTCAGGGAAAGCTTA
AAGTTCTTGGCGAACAGCGTGGGTATGAAGTACTTAAAGGGCAGTAGGTT
GACAAACACATACGCCCACACCATGATGCGCAGACCGAGGAAAACCTGGT
AGATGATCCGGTGTGAATTGGTGCTGGGCAGGACCAACAGGGCTAGCACC
TCGGTGAGTATGCTGTACAGACCCACCGTTAGATTCAGGCCCACAAAGTA
GTTTTCGTACCTGTAAACATCGATGGCGACGAGGGACAGCAGGTAGAGTC
CCTTGGAGCCCACCTCCAGGAAGTCAGCGTCCTTGAAGTCCAACCACGCC
CCATGCAGGTAGAACGTGATAATGAAGATCGAGTAGAACTGAAACTTTTC
CGCCTGATGAGATCGATAGAAGATCAGGTTCT

BO17960.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-PA 1149 CG1636-RA 383..1146 782..19 3820 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-RC 1343 CG1636-RC 519..1282 782..19 3820 100 Minus
CG1636-RA 2124 CG1636-RA 519..1282 782..19 3820 100 Minus
CG1636-RB 2325 CG1636-RB 686..1234 567..19 2745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8274707..8275209 612..110 2515 100 Minus
X 23542271 X 8274455..8274627 782..610 865 100 Minus
X 23542271 X 8275268..8275359 110..19 460 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:01:31 has no hits.

BO17960.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:15:58 Download gff for BO17960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-PA 383..1149 15..782 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:01 Download gff for BO17960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 519..1285 15..782 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:16 Download gff for BO17960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 519..1285 15..782 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:16 Download gff for BO17960.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8274455..8274626 611..782 100 -> Minus
X 8274709..8275208 111..610 100 -> Minus
X 8275268..8275362 15..110 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:01 Download gff for BO17960.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8168488..8168659 611..782 100 -> Minus
arm_X 8168742..8169241 111..610 100 -> Minus
arm_X 8169301..8169395 15..110 97   Minus

BO17960.5prime Sequence

823 bp (777 high quality bases) assembled on 2006-10-13

> BO17960.5prime
GAAGTTATCAGTCGACATGACCTCCATTCTGGACATGAAGGCCGGTCCGC
CCGACTACTGGGCGGAGATCAGCAACTTCTTTCTGCCGCTGAAATACCTG
ATCACCAACGACCGCTTCGATTCGATGGTGCGGGACATAGACCTCTATTA
CCTGATCAACGGGGTCTTTTGGATATTCGTGGCGTTGTCTTGCGGCTACT
ACGCCTTCCAGCGGCTCTTCCAGTTCTTTCTGAAGTCGTCGAGCATGAAG
CACTTTCAGCGGAGGCTGTTCGCCCGCGTCATTTGGAACATCGCCTTCTA
TGCGGCCAGCTGCCTGTTCCTGCACTTCTACAACGAGTTCATGATCCTGC
CGCAGCTGATGAAGAACCAAGGACGCTACTCGCTCTTCTACTCCTCGGAG
AACCTGATCTTCTATCGATCTCATCAGGCGGAAAAGTTTCAGTTCTACTC
GATCTTCATTATCACGTTCTACCTGCATGGGGCGTGGTTGGACTTCAAGG
ACGCTGACTTCCTGGAGGTGGGCTCCAAGGGACTCTACCTGCTGTCCCTC
GTCGCCATCGATGTTTACAGGTACGAAAACTACTTTGTGGGCCTGAATCT
AACGGTGGGTCTGTACAGCATACTCACCGAGGTGCTAGCCCTGTTGGTCC
TGCCCAGCACCAATTCACACCGGATCATCTACCANGTTTTCCTCGGTCTG
CGCATCATGGTGTGGGCGTATGTGTTTGTCAACCTACTGCCCTTTAAGTA
CTTCATACCCACGCTGTTCGCCAAGAACTTTAAGCTTTCCCTGAATTGTG
CCATTTGGTTGTGGTACGGCCTC

BO17960.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-PA 1149 CG1636-RA 1..780 17..796 3881 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-RC 1343 CG1636-RC 136..943 16..823 3984 99.6 Plus
CG1636-RA 2124 CG1636-RA 136..943 16..823 3984 99.6 Plus
CG1636-RB 2325 CG1636-RB 136..690 16..570 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8274277..8274627 221..571 1755 100 Plus
X 23542271 X 8274707..8274961 569..823 1204 98 Plus
X 23542271 X 8273547..8273754 16..223 1040 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:16:19 has no hits.

BO17960.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:00 Download gff for BO17960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:17 Download gff for BO17960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 131..943 10..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:02 Download gff for BO17960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 131..943 10..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:02 Download gff for BO17960.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8273542..8273754 10..223 98 -> Plus
X 8274280..8274626 224..570 100 -> Plus
X 8274709..8274961 571..823 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:17 Download gff for BO17960.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8167575..8167787 10..223 98 -> Plus
arm_X 8168313..8168659 224..570 100 -> Plus
arm_X 8168742..8168994 571..823 98   Plus

BO17960.complete Sequence

1180 bp assembled on 2006-10-11

GenBank Submission: FJ634265

> BO17960.complete
GAAGTTATCAGTCGACATGACCTCCATTCTGGACATGAAGGCCGGTCCGC
CCGACTACTGGGCGGAGATCAGCAACTTCTTTCTGCCGCTGAAATACCTG
ATCACCAACGACCGCTTCGATTCGATGGTGCGGGACATAGACCTCTATTA
CCTGATCAACGGGGTCTTTTGGATATTCGTGGCGTTGTCTTGCGGCTACT
ACGCCTTCCAGCGGCTCTTCCAGTTCTTTCTGAAGTCGTCGAGCATGAAG
CACTTTCAGCGGAGGCTGTTCGCCCGCGTCATTTGGAACATCGCCTTCTA
TGCGGCCAGCTGCCTGTTCCTGCACTTCTACAACGAGTTCATGATCCTGC
CGCAGCTGATGAAGAACCAAGGACGCTACTCGCTCTTCTACTCCTCGGAG
AACCTGATCTTCTATCGATCTCATCAGGCGGAAAAGTTTCAGTTCTACTC
GATCTTCATTATCACGTTCTACCTGCATGGGGCGTGGTTGGACTTCAAGG
ACGCTGACTTCCTGGAGGTGGGCTCCAAGGGACTCTACCTGCTGTCCCTC
GTCGCCATCGATGTTTACAGGTACGAAAACTACTTTGTGGGCCTGAATCT
AACGGTGGGTCTGTACAGCATACTCACCGAGGTGCTAGCCCTGTTGGTCC
TGCCCAGCACCAATTCACACCGGATCATCTACCAGGTTTTCCTCGGTCTG
CGCATCATGGTGTGGGCGTATGTGTTTGTCAACCTACTGCCCTTTAAGTA
CTTCATACCCACGCTGTTCGCCAAGAACTTTAAGCTTTCCCTGAATGTGC
CCATTTGGTTGTGGTACGGCCTCTCCATTTGGAACTCGCCGGTGCTGCAA
TACTTCTACCATCAGATATATCACACAGCGCCGTCGGATTGTTCGGGCGA
GGGATCGGCGGCTAAGTGCATCCTGGTCAAGGACACCAGTGAGTTCCGGC
ACTACAAGACACTGAAGAAGGCCTATTTGGAGGTAAAGCTGGCACACATT
AGAACCACGTCCAATTCGCTGCCCTCCGAAACCAGTTCGGCCTCGGCCAA
AACCTTTCAGGCCATAAAATGCGTCATGATGCTTAAGCGCAAATTGAAGC
GAATTCGCGAGGGACGTGGCCATGAGCCGGAGGATGACAACGATGACCAG
GCCATTGATACCGCAAGCTTTCTAGACCAT

BO17960.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-RC 1149 CG1636-PC 1..1146 17..1162 5730 100 Plus
CG1636-RA 1149 CG1636-PA 1..1146 17..1162 5730 100 Plus
CG1636-RB 1101 CG1636-PB 1..554 17..570 2770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-RC 1343 CG1636-RC 136..1282 16..1162 5735 100 Plus
CG1636-RA 2124 CG1636-RA 136..1282 16..1162 5735 100 Plus
CG1636-RB 2325 CG1636-RB 136..690 16..570 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8274707..8275209 569..1071 2515 100 Plus
X 23542271 X 8274277..8274627 221..571 1755 100 Plus
X 23542271 X 8273547..8273754 16..223 1040 100 Plus
X 23542271 X 8275268..8275359 1071..1162 460 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:52:51 has no hits.

BO17960.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:06 Download gff for BO17960.complete
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 1..1149 17..1166 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:31 Download gff for BO17960.complete
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 126..1280 10..1166 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:33 Download gff for BO17960.complete
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 137..1282 17..1164 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:06 Download gff for BO17960.complete
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 126..1280 10..1166 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:11 Download gff for BO17960.complete
Subject Subject Range Query Range Percent Splice Strand
CG1636-RA 137..1282 17..1164 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:11 Download gff for BO17960.complete
Subject Subject Range Query Range Percent Splice Strand
X 8274709..8275208 571..1070 100 -> Plus
X 8273548..8273754 17..223 100 -> Plus
X 8274280..8274626 224..570 100 -> Plus
X 8275268..8275359 1071..1164 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:33 Download gff for BO17960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8167581..8167787 17..223 100 -> Plus
arm_X 8168313..8168659 224..570 100 -> Plus
arm_X 8168742..8169241 571..1070 100 -> Plus
arm_X 8169301..8169392 1071..1164 97   Plus

BO17960.pep Sequence

Translation from 16 to 1180

> BO17960.pep
MTSILDMKAGPPDYWAEISNFFLPLKYLITNDRFDSMVRDIDLYYLINGV
FWIFVALSCGYYAFQRLFQFFLKSSSMKHFQRRLFARVIWNIAFYAASCL
FLHFYNEFMILPQLMKNQGRYSLFYSSENLIFYRSHQAEKFQFYSIFIIT
FYLHGAWLDFKDADFLEVGSKGLYLLSLVAIDVYRYENYFVGLNLTVGLY
SILTEVLALLVLPSTNSHRIIYQVFLGLRIMVWAYVFVNLLPFKYFIPTL
FAKNFKLSLNVPIWLWYGLSIWNSPVLQYFYHQIYHTAPSDCSGEGSAAK
CILVKDTSEFRHYKTLKKAYLEVKLAHIRTTSNSLPSETSSASAKTFQAI
KCVMMLKRKLKRIREGRGHEPEDDNDDQAIDTASFLDH

BO17960.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1636-PC 382 CG1636-PC 1..382 1..382 2017 100 Plus
CG1636-PA 382 CG1636-PA 1..382 1..382 2017 100 Plus
CG1636-PB 366 CG1636-PB 1..366 1..382 1904 95.8 Plus