Clone Sequence Records
BO17965.3prime Sequence
697 bp (696 high quality bases) assembled on 2006-10-13
> BO17965.3prime
ATGGTCTAGAAAGCTTGCCTTGTTGCGCTTGCCCTTAGCTTTGCCAGGAG
GCTTGCCCTCAACATTAGGCTTTGCCTTAGGTATGTAGACACCATGGTTC
GTCTTCTTTAGGTGGGCAAACAGCTTGTTCTTGGAGTCAAAGACAAGCCT
ACAGGTAACACAAGTGTGTTGCGACTTGGTCGGGTCGAGGTCCTCATCTC
CGCTTTTGGGAGCCACTGTTGCCTCCTTTGTATTCGGTTCCGAAACAGTT
TGCTCTAATAGCTTAACCTTCCTAGTCGTCGTCTTTTTGCTTTTACTCTT
TTTGCTCGCTTTTTTGCCTTTACTCCAGTCTTCATCCTCTGACTCGCTCT
TGATTGCCTTCTTTTCTATTGGCTCATCTGGTTCGTCACTGCCTTCCGCC
TGCGCTTGCTTGACAGCTGACTTCCTTGCCTTTTTGTTTTTTTTGGTTCG
TTTGGCTAGCGAAGATTCTTCTTCGCTTGGAACCCCGTCGAAAGATATCT
GATCCTCAGAGACTTGCAATTCTTCCAGCGATTCCTGTACGCCCATTAAA
CTGTCTTCATGGGGTTCATTGTGGAAAGCGTCCTCTTCTTCCTCCATTTC
CTGACACAGCCGGTCGACATTTTCATTATGCTTCTTGCTTTCTTCGTGAT
TAGCACGCGCCTTGGCGTTTTTAAATGTCTTGTTGCATGCCACGCAG
BO17965.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-PA | 1623 | CG2790-RA | 942..1620 | 697..19 | 3395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-RA | 1757 | CG2790-RA | 967..1645 | 697..19 | 3395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24946673..24947351 | 19..697 | 3395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:39:08 has no hits.
BO17965.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:03 Download gff for
BO17965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-PA | 942..1623 | 18..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:11 Download gff for
BO17965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 967..1645 | 19..697 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:32 Download gff for
BO17965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 967..1645 | 19..697 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:32 Download gff for
BO17965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24946673..24947351 | 19..697 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:11 Download gff for
BO17965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20834196..20834874 | 19..697 | 100 | | Plus |
BO17965.5prime Sequence
744 bp (716 high quality bases) assembled on 2006-10-13
> BO17965.5prime
GAAGTTATCAGTCGACATGCGTTGCTATTACGAGGAGCTCGAGCTCCAAA
GAAACGCCAACGATGGGGACATCAAGAGTGCGTACCGTAAGATGGCCCTG
CGCTGGCACCCGGACAAGAATCCCGACCGACTGGCGGAGGCCAAAGAGCG
CTTCCAGCTGATCCAGCAAGCGTATGAAGTTCTGTCTGATCCTCAGGAAC
GGTCTTGGTACGACAACCATCGCGAGCAGATCTTGCGCGGCAAGAACTCC
GATTATGCGGAGAACTGCCTGGACGTGTTCCAGTTCTTCACGAGCTCCTG
TTACAAGGGCTATGGCGACAATGAGCACGGCTTTTACCGCGTGTACACCG
ATGTCTTCGTCCAAATCGCCTCGGAGGACTTAGAGTTCATGGACAAGGAC
GACCGGTTGGGGATGGCGCCTGACTTTGGTCATTCAAACAGTAGTTACGA
AGATGTGGTGGGTCCGTTCTACGCCTTTTGGCAGGCATACAGTACCCGGA
AGACCTACGACTGGCTGTGTCCCTACGATGTTCGCGAAATAAAAGAGCGC
TTTATCCTACGCAAGGTGGAGAAGGAGATGAAAAAGATCGTTCAGGCTGC
CCGCAAGGAACGCAACGAAGAGGTTCGCAACTTAGTCAACTTTGTGCGAA
AAAGGGATCCCAGAGTGCAGGCCTACAGGCGCATGCTTGAGGAACGCGTC
GAGGCCAATCGACTTAAGCAGGAGGAGAAGCGCAAAGAGCAGTT
BO17965.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-PA | 1623 | CG2790-RA | 1..728 | 17..744 | 3640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-RA | 1757 | CG2790-RA | 24..753 | 15..744 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24947746..24948355 | 624..15 | 3050 | 100 | Minus |
| 2R | 25286936 | 2R | 24947565..24947688 | 744..621 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:51:45 has no hits.
BO17965.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:03 Download gff for
BO17965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-PA | 1..728 | 17..744 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:03:56 Download gff for
BO17965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 20..753 | 10..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:04 Download gff for
BO17965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 20..753 | 10..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:04 Download gff for
BO17965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24947565..24947686 | 623..744 | 100 | <- | Minus |
| 2R | 24947748..24948359 | 10..622 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:03:56 Download gff for
BO17965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20835088..20835209 | 623..744 | 100 | <- | Minus |
| arm_2R | 20835271..20835882 | 10..622 | 99 | | Minus |
BO17965.complete Sequence
1654 bp assembled on 2007-03-23
GenBank Submission: FJ634266
> BO17965.complete
GAAGTTATCAGTCGACATGCGTTGCTATTACGAGGAGCTCGAGCTCCAAA
GAAACGCCAACGATGGGGACATCAAGAGTGCGTACCGTAAGATGGCCCTG
CGCTGGCACCCGGACAAGAATCCCGACCGACTGGCGGAGGCCAAAGAGCG
CTTCCAGCTGATCCAGCAAGCGTATGAAGTTCTGTCTGATCCTCAGGAAC
GGTCTTGGTACGACAACCATCGCGAGCAGATCTTGCGCGGCAAGAACTCC
GATTATGCGGAGAACTGCCTGGACGTGTTCCAGTTCTTCACGAGCTCCTG
TTACAAGGGCTATGGCGACAATGAGCACGGCTTTTACCGCGTGTACACCG
ATGTCTTCGTCCAAATCGCCTCGGAGGACTTAGAGTTCATGGACAAGGAC
GACCGGTTGGGGATGGCGCCTGACTTTGGTCATTCAAACAGTAGTTACGA
AGATGTGGTGGGTCCGTTCTACGCCTTTTGGCAGGCATACAGTACCCGGA
AGACCTACGACTGGCTGTGTCCCTACGATGTTCGCGAAATAAAAGAGCGC
TTTATCCTACGCAAGGTGGAGAAGGAGATGAAAAAGATCGTTCAGGCTGC
CCGCAAGGAACGCAACGAAGAGGTTCGCAACTTAGTCAACTTTGTGCGAA
AAAGGGATCCCAGAGTGCAGGCCTACAGGCGCATGCTTGAGGAACGCGTC
GAGGCCAATCGACTTAAGCAGGAGGAGAAGCGCAAAGAGCAGTTAAGGAA
GCGCCAGGAAGAACTGGCAGCCGTCAGGAAAAATAATGTCTTTAACGAGG
GCTACGAGGAGCAGCTAAAGCAGTTAGAGCAGCAGTACGATAGCAAGTCA
GAAGATTACACGGATGAAGACGAGAACGACGACGATGGCGAGGACTTTGA
CCATGAAGGCGGCCAGGAAGCCGAGGAGTACGAAGTGGAGTATGTAGACG
ATCTTTACTGCGTGGCATGCAACAAGACATTTAAAAACGCCAAGGCGCGT
GCTAATCACGAAGAAAGCAAGAAGCATAATGAAAATGTCGACCGGCTGTG
TCAGGAAATGGAGGAAGAAGAGGACGCTTTCCACAATGAACCCCATGAAG
ACAGTTTAATGGGCGTACAGGAATCGCTGGAAGAATTGCAAGTCTCTGAG
GATCAGATATCTTTCGACGGGGTTCCAAGCGAAGAAGAATCTTCGCTAGC
CAAACGAACCAAAAAAAACAAAAAGGCAAGGAAGTCAGCTGTCAAGCAAG
CGCAGGCGGAAGGCAGTGACGAACCAGATGAGCCAATAGAAAAGAAGGCA
ATCAAGAGCGAGTCAGAGGATGAAGACTGGAGTAAAGGCAAAAAAGCGAG
CAAAAAGAGTAAAAGCAAAAAGACGACGACTAGGAAGGTTAAGCTATTAG
AGCAAACTGTTTCGGAACCGAATACAAAGGAGGCAACAGTGGCTCCCAAA
AGCGGAGATGAGGACCTCGACCCGACCAAGTCGCAACACACTTGTGTTAC
CTGTAGGCTTGTCTTTGACTCCAAGAACAAGCTGTTTGCCCACCTAAAGA
AGACGAACCATGGTGTCTACATACCTAAGGCAAAGCCTAATGTTGAGGGC
AAGCCTCCTGGCAAAGCTAAGGGCAAGCGCAACAAGGCAAGCTTTCTAGA
CCAT
BO17965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-RA | 1623 | CG2790-PA | 1..1620 | 17..1636 | 8100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-RA | 1757 | CG2790-RA | 24..1645 | 15..1636 | 8110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24946673..24947688 | 1636..621 | 5080 | 100 | Minus |
| 2R | 25286936 | 2R | 24947746..24948355 | 624..15 | 3050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:01:19 has no hits.
BO17965.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:47 Download gff for
BO17965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 1..1623 | 17..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:00 Download gff for
BO17965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 17..1642 | 10..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:56 Download gff for
BO17965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 26..1645 | 17..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:47 Download gff for
BO17965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 17..1642 | 10..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:28 Download gff for
BO17965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2790-RA | 26..1645 | 17..1638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:28 Download gff for
BO17965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24946671..24947686 | 623..1638 | 99 | <- | Minus |
| 2R | 24947748..24948353 | 17..622 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:56 Download gff for
BO17965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20834194..20835209 | 623..1638 | 99 | <- | Minus |
| arm_2R | 20835271..20835876 | 17..622 | 100 | | Minus |
BO17965.pep Sequence
Translation from 16 to 1654
> BO17965.pep
MRCYYEELELQRNANDGDIKSAYRKMALRWHPDKNPDRLAEAKERFQLIQ
QAYEVLSDPQERSWYDNHREQILRGKNSDYAENCLDVFQFFTSSCYKGYG
DNEHGFYRVYTDVFVQIASEDLEFMDKDDRLGMAPDFGHSNSSYEDVVGP
FYAFWQAYSTRKTYDWLCPYDVREIKERFILRKVEKEMKKIVQAARKERN
EEVRNLVNFVRKRDPRVQAYRRMLEERVEANRLKQEEKRKEQLRKRQEEL
AAVRKNNVFNEGYEEQLKQLEQQYDSKSEDYTDEDENDDDGEDFDHEGGQ
EAEEYEVEYVDDLYCVACNKTFKNAKARANHEESKKHNENVDRLCQEMEE
EEDAFHNEPHEDSLMGVQESLEELQVSEDQISFDGVPSEEESSLAKRTKK
NKKARKSAVKQAQAEGSDEPDEPIEKKAIKSESEDEDWSKGKKASKKSKS
KKTTTRKVKLLEQTVSEPNTKEATVAPKSGDEDLDPTKSQHTCVTCRLVF
DSKNKLFAHLKKTNHGVYIPKAKPNVEGKPPGKAKGKRNKASFLDH
BO17965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2790-PA | 540 | CG2790-PA | 1..540 | 1..540 | 2853 | 100 | Plus |
| mrj-PA | 259 | CG8448-PA | 4..92 | 4..90 | 216 | 46.1 | Plus |
| mrj-PC | 259 | CG8448-PC | 4..92 | 4..90 | 216 | 46.1 | Plus |
| mrj-PB | 259 | CG8448-PB | 4..92 | 4..90 | 216 | 46.1 | Plus |
| mrj-PD | 259 | CG8448-PD | 4..92 | 4..90 | 216 | 46.1 | Plus |
