Clone Sequence Records
BO17969.3prime Sequence
788 bp (716 high quality bases) assembled on 2006-10-13
> BO17969.3prime
ATGGTCTAGAAAGCTTGCTTCGTTGTTGTCGTCAGCCATCGGGATAGCAG
CTGCCGGCGCCACAGCCTCTGGAAGAGCAGGTTGGACCTGAGCGGGCGGC
TGGACGGCTTGGACGGCCATTGCCATTGCTGGTTCCCGATTTAGCAGGGC
TATGTTGCTGGCTTTCATGCGGGCTATGGAGGAGGCCATTCCAGAGCCGT
TGCCCATAGCTGATAGACACGGTGACATACAAGGTGTTGTGCATGATGAA
TTGCTGATTTCACACTGGTCAAGTAGGCGGAGAAGCTCATTGGTGTCGGG
TCCGCCATTGATTTTCTGCTGCGGCTCATCCTTGGAGAGCAGCGCCAGTG
CAGTGGTTAGGTCCCACATTTGAATAGCGCCGTTGCAGTGACCGGTGAGT
ATGAACCGGGACGATACCTCGCACTCGAGCACACAGAAGGCCGAAATTGT
GGAGCTATCTACGGATCTAATGACGCACACCCGATCACCGTTGGAGGCCA
AGCGTACGTACAGCTGATCCGTCTCGGGCACCACCTTTTGCACAAATATC
ATGTCGTCGTAGTCACCGTAAGGTCCAAAATCATTTCCAGCCGCATAGCT
GTAGCTCGTATCGGTAGCTTCCAGCGACACGATTTTGAACGATGCTTCCG
GCGTGGATCCCGGCTGGGTGGAGAGCATGCCCCGGAAGCGGGTCAGACGC
CATGTTCGCACGTGGTGGTATTCGCTGCACACGGAGACGAGGTATTTCTC
CGACAGCATCACCTTCGTTACGGGGCTTTGGTGCACAA
BO17969.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9467-PA | 2193 | CG9467-RA | 1421..2190 | 788..19 | 3850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9467-RA | 3180 | CG9467-RA | 1717..2486 | 788..19 | 3850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9798463..9799232 | 19..788 | 3850 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 15:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 3003..3042 | 709..748 | 110 | 75 | Plus |
BO17969.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:06 Download gff for
BO17969.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-PA | 1423..2193 | 16..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:25:14 Download gff for
BO17969.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 1719..2486 | 19..786 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:47 Download gff for
BO17969.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 1719..2486 | 19..786 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:47 Download gff for
BO17969.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9798463..9799230 | 19..786 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:25:14 Download gff for
BO17969.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5624185..5624952 | 19..786 | 100 | | Plus |
BO17969.5prime Sequence
913 bp (746 high quality bases) assembled on 2006-10-13
> BO17969.5prime
GAAGTTATCAGTCGACATGTCCCACTTCACGCATGCCTCCAGCAGCGACC
TGGTCAACCTCAATGTGGGTGGTCAGCGCTTTTCCACGTCGCGGCAAACG
CTTACGTGGATCCCGGACACCTTCTTCACGGCTCTTCTCAGCGGACGCAT
CTCGAGTCTCAGAGACGAGCACAATGCCATCTTTATTGATCGCGATCCGA
CGCTCTTCTCGATCATACTTAACTACTTAAGGACCAAGGACATCGACATC
AAGAACTGCGAAATACGCGCTCTGCGCCATGAGGCCGAGTACTATGGCAT
CACGCCGCTGACCAAGCGCCTGGCCCTCTGCGAAGACCTTAACCACTCGT
CCTGCGGTGATTTGCTGTTCTACGGATTTCTGGCGGCGCCGCCCATGCCG
TCAAACGAAGCTGTGGCTGCTACTAGCGTTGACGAGTCATTGCCCTCCAC
TTCGGCCAGTGCGATTGGCAGTCGTCCTGGGTCCATGGTGCGCGTTCCCG
AACCCTCACGCTCCTCACACTCGCGCAATTCATCATGGGATCTGCGCCTT
GGTCGCACAGGTAGCACTGGCAATGGTGCCAATCCCCCAGCTCCCATGTT
GCACTCACGTAATCCCTCGATTGACTTTATGCGCCACTCTCGGAACTCCT
CGGCCGATCTGAACAAAGTCTTTCGAAACGAAGTTGGCCTGGTATTCAGT
CCCACGCAGAACTCAAACTGGGTGGACCCGTTGCGAGTGCAAATCATTAA
GGCGCACCAAAATTGGATAGCAGTGGCTTACGCACACTTTGTGACTTGCT
ACCGGGTGAAAGACTCCAACGGATGGCAGCAGGTGTTCACATCGCCCCAC
ATCGACGCCACTATCGAAAGAATCGCCATCAACTCAAAGGTGAATACTTC
CGCAGCAAAGCCA
BO17969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9467-PA | 2193 | CG9467-RA | 1..897 | 17..913 | 4460 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9467-RA | 3180 | CG9467-RA | 296..1193 | 16..913 | 4475 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9799756..9800591 | 913..78 | 4165 | 99.9 | Minus |
| 3R | 32079331 | 3R | 9800669..9800731 | 78..16 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:39:25 has no hits.
BO17969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:07 Download gff for
BO17969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:12 Download gff for
BO17969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 286..1192 | 7..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:39 Download gff for
BO17969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 286..1192 | 7..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:39 Download gff for
BO17969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9799757..9800590 | 79..912 | 99 | <- | Minus |
| 3R | 9800669..9800741 | 7..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:12 Download gff for
BO17969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5625479..5626312 | 79..912 | 99 | <- | Minus |
| arm_3R | 5626391..5626463 | 7..78 | 94 | | Minus |
BO17969.complete Sequence
2224 bp assembled on 2007-03-23
GenBank Submission: FJ634267
> BO17969.complete
GAAGTTATCAGTCGACATGTCCCACTTCACGCATGCCTCCAGCAGCGACC
TGGTCAACCTCAATGTGGGTGGTCAGCGCTTTTCCACGTCGCGGCAAACG
CTTACGTGGATCCCGGACACCTTCTTCACGGCTCTTCTCAGCGGACGCAT
CTCGAGTCTCAGAGACGAGCACAATGCCATCTTTATTGATCGCGATCCGA
CGCTCTTCTCGATCATACTTAACTACTTAAGGACCAAGGACATCGACATC
AAGAACTGCGAAATACGCGCTCTGCGCCATGAGGCCGAGTACTATGGCAT
CACGCCGCTGACCAAGCGCCTGGCCCTCTGCGAAGACCTTAACCACTCGT
CCTGCGGTGATTTGCTGTTCTACGGATTTCTGGCGGCGCCGCCCATGCCG
TCAAACGAAGCTGTGGCTGCTACTAGCGTTGACGAGTCATTGCCCTCCAC
TTCGGCCAGTGCGATTGGCAGTCGTCCTGGGTCCATGGTGCGCGTTCCCG
AACCCTCACGCTCCTCACACTCGCGCAATTCATCATGGGATCTGCGCCTT
GGTCGCACAGGTAGCACTGGCAATGGTGCCAATCCCCCAGCTCCCATGTT
GCACTCACGTAATCCCTCGATTGACTTTATGCGCCACTCTCGGAACTCCT
CGGCCGATCTGAACAAAGTCTTTCGAAACGAAGTTGGCCTGGTATTCAGT
CCCACGCAGAACTCAAACTGGGTGGACCCGTTGCGAGTGCAAATCATTAA
GGCGCACCAAAATTGGATAGCAGTGGCTTACGCACACTTTGTGACTTGCT
ACCGGGTGAAAGACTCCAACGGATGGCAGCAGGTGTTCACATCGCCCCAC
ATCGACGCCACTATCGAAAGAATCGCCATCAACTCAAAGGTGAATACTTC
CGCAGCAGAGCCACTGCCCAGCAAGATGGTGGCCATTTCTTACGGCAGTC
AGATAAGATTGTGGAGCATTCAGGAGGGCGGCCAGAAAACGGATGTGGGC
ACGTTTAATTTAAATGTGCGAGTGGAGTACCTGTTCTTTATCGGCAGTCA
GCTGGTGGCCCTGTCATCTTCCGGCAAGATCGGCGTCTGGCATGCGATGA
CGCAGCACTGGCAGATTCAGGACCTAGTGCCCGTGCTCTCATTCGATTCC
GCAGGCTCTTTTTTGCTGCTGGGCTGCAACAACGGCTCCATTTACTACAT
AGACATGCAGAAGTTCCCGCTCCGGATAAAGGACAATGATTTACTGGTTA
CCGAGCTCTACAAAGATGTCACACTAGACCCTATCACGGCCATCTCGGTC
TACCTTACCCCAAAAACCTCGAGCATAAGTGGCAATTGGATTGAAATTGC
CTATGGCACAAAGTCGGGAGCGGTTCGAATCATTGTCCAGCATCCGGAGA
CAGCTGGCCATGGACCACACCTGTTCGAGACCTTCTTTGTGCACCAAAGC
CCCGTAACGAAGGTGATGCTGTCGGAGAAATACCTCGTCTCCGTGTGCAG
CGAATACCACCACGTGCGAACATGGCGTCTGACCCGCTTCCGGGGCATGC
TCTCCACCCAGCCGGGATCCACGCCGGAAGCATCGTTCAAAATCGTGTCG
CTGGAAGCTACCGATACGAGCTACAGCTATGCGGCTGGAAATGATTTTGG
ACCTTACGGTGACTACGACGACATGATATTTGTGCAAAAGGTGGTGCCCG
AGACGGATCAGCTGTACGTACGCTTGGCCTCCAACGGTGATCGGGTGTGC
GTCATTAGATCCGTAGATAGCTCCACAATTTCGGCCTTCTGTGTGCTCGA
GTGCGAGGTATCGTCCCGGTTCATACTCACCGGTCACTGCAACGGCGCTA
TTCAAATGTGGGACCTAACCACTGCACTGGCGCTGCTCTCCAAGGATGAG
CCGCAGCAGAAAATCAATGGCGGACCCGACACCAATGAGCTTCTCCGCCT
ACTTGACCAGTGTGAAATCAGCAATTCATCATGCACAACACCTTGTATGT
CACCGTGTCTATCAGCTATGGGCAACGGCTCTGGAATGGCCTCCTCCATA
GCCCGCATGAAAGCCAGCAACATAGCCCTGCTAAATCGGGAACCAGCAAT
GGCAATGGCCGTCCAAGCCGTCCAGCCGCCCGCTCAGGTCCAACCTGCTC
TTCCAGAGGCTGTGGCGCCGGCAGCTGCTATCCCGATGGCTGACGACAAC
AACGAAGCAAGCTTTCTAGACCAT
BO17969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9467-RA | 2193 | CG9467-PA | 1..2190 | 17..2206 | 10950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9467-RA | 3180 | CG9467-RA | 296..2486 | 16..2206 | 10955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9798463..9800591 | 2206..78 | 10645 | 100 | Minus |
| 3R | 32079331 | 3R | 9800669..9800731 | 78..16 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:11:13 has no hits.
BO17969.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:48 Download gff for
BO17969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 1..2193 | 17..2209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:02 Download gff for
BO17969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 311..2511 | 7..2206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:04 Download gff for
BO17969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 297..2486 | 17..2208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:48 Download gff for
BO17969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 311..2511 | 7..2206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:11 Download gff for
BO17969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 297..2486 | 17..2208 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:11 Download gff for
BO17969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9798460..9800590 | 79..2208 | 99 | <- | Minus |
| 3R | 9800669..9800730 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:04 Download gff for
BO17969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5624182..5626312 | 79..2208 | 99 | <- | Minus |
| arm_3R | 5626391..5626452 | 17..78 | 100 | | Minus |
BO17969.pep Sequence
Translation from 16 to 2224
> BO17969.pep
MSHFTHASSSDLVNLNVGGQRFSTSRQTLTWIPDTFFTALLSGRISSLRD
EHNAIFIDRDPTLFSIILNYLRTKDIDIKNCEIRALRHEAEYYGITPLTK
RLALCEDLNHSSCGDLLFYGFLAAPPMPSNEAVAATSVDESLPSTSASAI
GSRPGSMVRVPEPSRSSHSRNSSWDLRLGRTGSTGNGANPPAPMLHSRNP
SIDFMRHSRNSSADLNKVFRNEVGLVFSPTQNSNWVDPLRVQIIKAHQNW
IAVAYAHFVTCYRVKDSNGWQQVFTSPHIDATIERIAINSKVNTSAAEPL
PSKMVAISYGSQIRLWSIQEGGQKTDVGTFNLNVRVEYLFFIGSQLVALS
SSGKIGVWHAMTQHWQIQDLVPVLSFDSAGSFLLLGCNNGSIYYIDMQKF
PLRIKDNDLLVTELYKDVTLDPITAISVYLTPKTSSISGNWIEIAYGTKS
GAVRIIVQHPETAGHGPHLFETFFVHQSPVTKVMLSEKYLVSVCSEYHHV
RTWRLTRFRGMLSTQPGSTPEASFKIVSLEATDTSYSYAAGNDFGPYGDY
DDMIFVQKVVPETDQLYVRLASNGDRVCVIRSVDSSTISAFCVLECEVSS
RFILTGHCNGAIQMWDLTTALALLSKDEPQQKINGGPDTNELLRLLDQCE
ISNSSCTTPCMSPCLSAMGNGSGMASSIARMKASNIALLNREPAMAMAVQ
AVQPPAQVQPALPEAVAPAAAIPMADDNNEASFLDH
BO17969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9467-PA | 730 | CG9467-PA | 1..730 | 1..730 | 3801 | 100 | Plus |
| CG10465-PA | 301 | CG10465-PA | 17..108 | 9..98 | 158 | 46.7 | Plus |
| inc-PC | 211 | CG32810-PC | 24..118 | 13..105 | 152 | 38.9 | Plus |
| inc-PD | 211 | CG32810-PD | 24..118 | 13..105 | 152 | 38.9 | Plus |
| inc-PB | 211 | CG32810-PB | 24..118 | 13..105 | 152 | 38.9 | Plus |
