Clone Sequence Records
BO17974.5prime Sequence
768 bp (642 high quality bases) assembled on 2006-10-13
> BO17974.5prime
GAAGTTATCAGTCGACATGTCATCGGCTATATACCTAGAGAACTATTTAG
ACGGATTGGAAAGTCTGCCAACGGAGCTGGAGAGAAATTTTAAGCTGATG
CGAAAATTAGACGATCGAGCACAAACAGCGATGAAGAGCATCGATAGCCA
TGCCAAGGACTTTATGCGCAAGCTGGGCGAGAACGGGGCCATGAGCGAGG
ATGAGAGGAGGGAGCGCCAGGAGGATATCAAGGCACTGTTCGGAAAGGCC
AAGGAGTACAGCGACGACAAGGTGCAGCTGGCCATTCAGACCTACGAACT
AGTGGACAAGCAGATACGGCGACTGGACAACGATTTAGCACGCTTCGAGG
GTGAGATTCAGGAGAAGGCCTCATCCACGCGTGCCAAATCCGAGGAAGTG
GTGGCCAAGAAAGGTCGCAAAAAAACCAAGGACAGCAAGACGACGGGCAA
AAAGAAAAAGTCCGCATCCTCGGATGAGGAAACTGGGCGCGGCAACAACC
AATCTAACGCCAATTCCAGTGTCAATTCGAGCAGCAATGCCGGGCAAGGT
AGCAAAAAGAAAAAGTCCAAGGTAAATCAAGAAAAAGAAACTCGCAAGGG
GGGCGCTCAAAAGAAAACCGTCGAGGTTGATGACTCTGAGAAGGAATCGT
GCCACACGGCCGCCACTCATCCCAGCGACGTTATGGACATGCCCGTCGAT
CCCAATGAGCCCACATATTGCCTATGCCACCAGGTGTCCTATGGAGAGAT
GATTGGCTGCAACAATCC
BO17974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-PA | 858 | CG9293-RA | 1..752 | 17..768 | 3735 | 99.8 | Plus |
CG9293-PB | 816 | CG9293-RB | 1..555 | 17..571 | 2775 | 100 | Plus |
CG9293-PB | 816 | CG9293-RB | 553..710 | 611..768 | 765 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-RA | 1044 | CG9293-RA | 100..851 | 17..768 | 3745 | 99.9 | Plus |
CG9293-RB | 1002 | CG9293-RB | 100..654 | 17..571 | 2775 | 100 | Plus |
CG9293-RB | 1002 | CG9293-RB | 652..809 | 611..768 | 775 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13386757..13387114 | 410..53 | 1790 | 100 | Minus |
2L | 23513712 | 2L | 13386488..13386690 | 613..411 | 1015 | 100 | Minus |
2L | 23513712 | 2L | 13386103..13386259 | 768..612 | 770 | 99.4 | Minus |
2L | 23513712 | 2L | 13387176..13387213 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:39:08 has no hits.
BO17974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:11 Download gff for
BO17974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-PA | 1..752 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:38 Download gff for
BO17974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 92..851 | 9..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:53 Download gff for
BO17974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 92..851 | 9..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:53 Download gff for
BO17974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13386103..13386257 | 614..768 | 99 | <- | Minus |
2L | 13386488..13386690 | 411..613 | 100 | <- | Minus |
2L | 13386757..13387113 | 54..410 | 100 | <- | Minus |
2L | 13387177..13387221 | 9..53 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:38 Download gff for
BO17974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13386103..13386257 | 614..768 | 99 | <- | Minus |
arm_2L | 13386488..13386690 | 411..613 | 100 | <- | Minus |
arm_2L | 13386757..13387113 | 54..410 | 100 | <- | Minus |
arm_2L | 13387177..13387221 | 9..53 | 91 | | Minus |
BO17974.3prime Sequence
562 bp (512 high quality bases) assembled on 2006-10-13
> BO17974.3prime
ATGGTCTAGAAAGCTTGCTTTCTTCTTTCTGTCCTGCGTACACTTGGGAC
AGAACCACTTGCCCTTTGGCTTTGTGGTGAGGCCAACACAAGCGAAGTGA
AACCACTCGATGGGACAGTCGGGATTGTCGCAGCCAATCATCTCTCCATA
GGACACCTGGTGGCATAGGCAATATGTGGGCTCATTGGGATCGACGGGCA
TGTCCATAACGTCGCTGGGATGAGTGGCGGCCGTGTGGCACGATTCCTTC
TCAGAGTCATCAACCTCGACGGTTTTCTTTTGAGCGCCCCCCTTGCGAGT
TTCTTTTTCTTGATTTACCTTGGACTTTTTCTTTTTGCTACCTTGCCCGG
CATTGCTGCTCGAATTGACACTGGAATTGGCGTTAGATTGGTTGTTGCCG
CGCCCAGTTTCCTCATCCGAGGATGCGGACTTTTTCTTTTTGCCCGTCGT
CTTGCTGTCCTTGGTTTTTTTGCGACCTTTCTTGGCCACCACTTCCTCGG
ATATGGCACGCGTGGATGAGGCCTTCTCCTGAATCTCACCCTCGAAACGT
GCTAAATTCGTT
BO17974.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-PA | 858 | CG9293-RA | 317..855 | 557..19 | 2645 | 99.6 | Minus |
CG9293-PB | 816 | CG9293-RB | 553..813 | 279..19 | 1305 | 100 | Minus |
CG9293-PB | 816 | CG9293-RB | 317..555 | 557..319 | 1145 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-RA | 1044 | CG9293-RA | 416..954 | 557..19 | 2665 | 99.6 | Minus |
CG9293-RB | 1002 | CG9293-RB | 652..912 | 279..19 | 1305 | 100 | Minus |
CG9293-RB | 1002 | CG9293-RB | 416..654 | 557..319 | 1165 | 99.2 | Minus |
Ing3-RA | 2298 | CG6632-RA | 1997..2149 | 193..41 | 210 | 77.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13386488..13386690 | 277..479 | 1015 | 100 | Plus |
2L | 23513712 | 2L | 13386099..13386259 | 118..278 | 805 | 100 | Plus |
2L | 23513712 | 2L | 13385938..13386036 | 19..117 | 495 | 100 | Plus |
2L | 23513712 | 2L | 13386757..13386834 | 480..557 | 360 | 97.4 | Plus |
X | 23542271 | X | 18650867..18651019 | 41..193 | 210 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:13:02 has no hits.
BO17974.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:10 Download gff for
BO17974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-PA | 313..858 | 18..562 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:41 Download gff for
BO17974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 412..954 | 19..562 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:31 Download gff for
BO17974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 412..954 | 19..562 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:31 Download gff for
BO17974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13386099..13386257 | 118..276 | 100 | <- | Plus |
2L | 13386488..13386690 | 277..479 | 100 | <- | Plus |
2L | 13386757..13386838 | 480..562 | 96 | | Plus |
2L | 13385938..13386036 | 19..117 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:41 Download gff for
BO17974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13385938..13386036 | 19..117 | 100 | <- | Plus |
arm_2L | 13386099..13386257 | 118..276 | 100 | <- | Plus |
arm_2L | 13386488..13386690 | 277..479 | 100 | <- | Plus |
arm_2L | 13386757..13386838 | 480..562 | 96 | | Plus |
BO17974.complete Sequence
889 bp assembled on 2006-10-11
GenBank Submission: FJ634269
> BO17974.complete
GAAGTTATCAGTCGACATGTCATCGGCTATATACCTAGAGAACTATTTAG
ACGGATTGGAAAGTCTGCCAACGGAGCTGGAGAGAAATTTTAAGCTGATG
CGAAAATTAGACGATCGAGCACAAACAGCGATGAAGAGCATCGATAGCCA
TGCCAAGGACTTTATGCGCAAGCTGGGCGAGAACGGGGCCATGAGCGAGG
ATGAGAGGAGGGAGCGCCAGGAGGATATCAAGGCACTGTTCGGAAAGGCC
AAGGAGTACAGCGACGACAAGGTGCAGCTGGCCATTCAGACCTACGAACT
AGTGGACAAGCAGATACGGCGACTGGACAACGATTTAGCACGCTTCGAGG
GTGAGATTCAGGAGAAGGCCTCATCCACGCGTGCCAAATCCGAGGAAGTG
GTGGCCAAGAAAGGTCGCAAAAAAACCAAGGACAGCAAGACGACGGGCAA
AAAGAAAAAGTCCGCATCCTCGGATGAGGAAACTGGGCGCGGCAACAACC
AATCTAACGCCAATTCCAGTGTCAATTCGAGCAGCAATGCCGGGCAAGGT
AGCAAAAAGAAAAAGTCCAAGGTAAATCAAGAAAAAGAAACTCGCAAGGG
GGGCGCTCAAAAGAAAACCGTCGAGGTTGATGACTCTGAGAAGGAATCGT
GCCACACGGCCGCCACTCATCCCAGCGACGTTATGGACATGCCCGTCGAT
CCCAATGAGCCCACATATTGCCTATGCCACCAGGTGTCCTATGGAGAGAT
GATTGGCTGCGACAATCCCGACTGTCCCATCGAGTGGTTTCACTTCGCTT
GTGTTGGCCTCACCACAAAGCCAAAGGGCAAGTGGTTCTGTCCCAAGTGT
ACGCAGGACAGAAAGAAGAAAGCAAGCTTTCTAGACCAT
BO17974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-RA | 858 | CG9293-PA | 1..855 | 17..871 | 4275 | 100 | Plus |
CG9293-RB | 816 | CG9293-PB | 1..555 | 17..571 | 2775 | 100 | Plus |
CG9293-RB | 816 | CG9293-PB | 553..813 | 611..871 | 1305 | 100 | Plus |
Ing3-RA | 2061 | CG6632-PA | 1869..2021 | 697..849 | 210 | 75.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-RA | 1044 | CG9293-RA | 100..954 | 17..871 | 4275 | 100 | Plus |
CG9293-RB | 1002 | CG9293-RB | 100..654 | 17..571 | 2775 | 100 | Plus |
CG9293-RB | 1002 | CG9293-RB | 652..912 | 611..871 | 1305 | 100 | Plus |
Ing3-RA | 2298 | CG6632-RA | 1997..2149 | 697..849 | 210 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13386757..13387114 | 410..53 | 1790 | 100 | Minus |
2L | 23513712 | 2L | 13386488..13386690 | 613..411 | 1015 | 100 | Minus |
2L | 23513712 | 2L | 13386099..13386259 | 772..612 | 805 | 100 | Minus |
2L | 23513712 | 2L | 13385938..13386036 | 871..773 | 495 | 100 | Minus |
X | 23542271 | X | 18650867..18651019 | 849..697 | 210 | 75.8 | Minus |
2L | 23513712 | 2L | 13387176..13387213 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:59:38 has no hits.
BO17974.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:02 Download gff for
BO17974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 1..858 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:15 Download gff for
BO17974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 79..941 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:10 Download gff for
BO17974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 100..944 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:02 Download gff for
BO17974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 79..941 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:24 Download gff for
BO17974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9293-RA | 100..944 | 17..861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:24 Download gff for
BO17974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13386488..13386690 | 411..613 | 100 | <- | Minus |
2L | 13385948..13386036 | 773..861 | 100 | <- | Minus |
2L | 13386099..13386257 | 614..772 | 100 | <- | Minus |
2L | 13386757..13387113 | 54..410 | 100 | <- | Minus |
2L | 13387177..13387213 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:10 Download gff for
BO17974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13386488..13386690 | 411..613 | 100 | <- | Minus |
arm_2L | 13385948..13386036 | 773..861 | 100 | <- | Minus |
arm_2L | 13386099..13386257 | 614..772 | 100 | <- | Minus |
arm_2L | 13386757..13387113 | 54..410 | 100 | <- | Minus |
arm_2L | 13387177..13387213 | 17..53 | 100 | | Minus |
BO17974.pep Sequence
Translation from 16 to 889
> BO17974.pep
MSSAIYLENYLDGLESLPTELERNFKLMRKLDDRAQTAMKSIDSHAKDFM
RKLGENGAMSEDERRERQEDIKALFGKAKEYSDDKVQLAIQTYELVDKQI
RRLDNDLARFEGEIQEKASSTRAKSEEVVAKKGRKKTKDSKTTGKKKKSA
SSDEETGRGNNQSNANSSVNSSSNAGQGSKKKKSKVNQEKETRKGGAQKK
TVEVDDSEKESCHTAATHPSDVMDMPVDPNEPTYCLCHQVSYGEMIGCDN
PDCPIEWFHFACVGLTTKPKGKWFCPKCTQDRKKKASFLDH
BO17974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9293-PA | 285 | CG9293-PA | 1..285 | 1..285 | 1493 | 100 | Plus |
CG9293-PB | 271 | CG9293-PB | 1..271 | 1..285 | 1397 | 95.1 | Plus |
CG7379-PA | 433 | CG7379-PA | 223..419 | 112..289 | 302 | 36.8 | Plus |
Ing3-PA | 686 | CG6632-PA | 624..683 | 228..287 | 257 | 61.7 | Plus |
Ing3-PA | 686 | CG6632-PA | 2..176 | 5..186 | 199 | 30.2 | Plus |
MESR4-PD | 2151 | CG4903-PD | 2092..2136 | 234..278 | 163 | 55.6 | Plus |