Clone BO17974 Report

Search the DGRC for BO17974

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG9293-RA
Protein status:BO17974.pep: validated full length
Sequenced Size:889

Clone Sequence Records

BO17974.5prime Sequence

768 bp (642 high quality bases) assembled on 2006-10-13

> BO17974.5prime
GAAGTTATCAGTCGACATGTCATCGGCTATATACCTAGAGAACTATTTAG
ACGGATTGGAAAGTCTGCCAACGGAGCTGGAGAGAAATTTTAAGCTGATG
CGAAAATTAGACGATCGAGCACAAACAGCGATGAAGAGCATCGATAGCCA
TGCCAAGGACTTTATGCGCAAGCTGGGCGAGAACGGGGCCATGAGCGAGG
ATGAGAGGAGGGAGCGCCAGGAGGATATCAAGGCACTGTTCGGAAAGGCC
AAGGAGTACAGCGACGACAAGGTGCAGCTGGCCATTCAGACCTACGAACT
AGTGGACAAGCAGATACGGCGACTGGACAACGATTTAGCACGCTTCGAGG
GTGAGATTCAGGAGAAGGCCTCATCCACGCGTGCCAAATCCGAGGAAGTG
GTGGCCAAGAAAGGTCGCAAAAAAACCAAGGACAGCAAGACGACGGGCAA
AAAGAAAAAGTCCGCATCCTCGGATGAGGAAACTGGGCGCGGCAACAACC
AATCTAACGCCAATTCCAGTGTCAATTCGAGCAGCAATGCCGGGCAAGGT
AGCAAAAAGAAAAAGTCCAAGGTAAATCAAGAAAAAGAAACTCGCAAGGG
GGGCGCTCAAAAGAAAACCGTCGAGGTTGATGACTCTGAGAAGGAATCGT
GCCACACGGCCGCCACTCATCCCAGCGACGTTATGGACATGCCCGTCGAT
CCCAATGAGCCCACATATTGCCTATGCCACCAGGTGTCCTATGGAGAGAT
GATTGGCTGCAACAATCC

BO17974.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9293-PA 858 CG9293-RA 1..752 17..768 3735 99.8 Plus
CG9293-PB 816 CG9293-RB 1..555 17..571 2775 100 Plus
CG9293-PB 816 CG9293-RB 553..710 611..768 765 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9293-RA 1044 CG9293-RA 100..851 17..768 3745 99.9 Plus
CG9293-RB 1002 CG9293-RB 100..654 17..571 2775 100 Plus
CG9293-RB 1002 CG9293-RB 652..809 611..768 775 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13386757..13387114 410..53 1790 100 Minus
2L 23513712 2L 13386488..13386690 613..411 1015 100 Minus
2L 23513712 2L 13386103..13386259 768..612 770 99.4 Minus
2L 23513712 2L 13387176..13387213 54..17 190 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:39:08 has no hits.

BO17974.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:11 Download gff for BO17974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9293-PA 1..752 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:38 Download gff for BO17974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9293-RA 92..851 9..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:53 Download gff for BO17974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9293-RA 92..851 9..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:53 Download gff for BO17974.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13386103..13386257 614..768 99 <- Minus
2L 13386488..13386690 411..613 100 <- Minus
2L 13386757..13387113 54..410 100 <- Minus
2L 13387177..13387221 9..53 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:38 Download gff for BO17974.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13386103..13386257 614..768 99 <- Minus
arm_2L 13386488..13386690 411..613 100 <- Minus
arm_2L 13386757..13387113 54..410 100 <- Minus
arm_2L 13387177..13387221 9..53 91   Minus

BO17974.3prime Sequence

562 bp (512 high quality bases) assembled on 2006-10-13

> BO17974.3prime
ATGGTCTAGAAAGCTTGCTTTCTTCTTTCTGTCCTGCGTACACTTGGGAC
AGAACCACTTGCCCTTTGGCTTTGTGGTGAGGCCAACACAAGCGAAGTGA
AACCACTCGATGGGACAGTCGGGATTGTCGCAGCCAATCATCTCTCCATA
GGACACCTGGTGGCATAGGCAATATGTGGGCTCATTGGGATCGACGGGCA
TGTCCATAACGTCGCTGGGATGAGTGGCGGCCGTGTGGCACGATTCCTTC
TCAGAGTCATCAACCTCGACGGTTTTCTTTTGAGCGCCCCCCTTGCGAGT
TTCTTTTTCTTGATTTACCTTGGACTTTTTCTTTTTGCTACCTTGCCCGG
CATTGCTGCTCGAATTGACACTGGAATTGGCGTTAGATTGGTTGTTGCCG
CGCCCAGTTTCCTCATCCGAGGATGCGGACTTTTTCTTTTTGCCCGTCGT
CTTGCTGTCCTTGGTTTTTTTGCGACCTTTCTTGGCCACCACTTCCTCGG
ATATGGCACGCGTGGATGAGGCCTTCTCCTGAATCTCACCCTCGAAACGT
GCTAAATTCGTT

BO17974.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9293-PA 858 CG9293-RA 317..855 557..19 2645 99.6 Minus
CG9293-PB 816 CG9293-RB 553..813 279..19 1305 100 Minus
CG9293-PB 816 CG9293-RB 317..555 557..319 1145 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9293-RA 1044 CG9293-RA 416..954 557..19 2665 99.6 Minus
CG9293-RB 1002 CG9293-RB 652..912 279..19 1305 100 Minus
CG9293-RB 1002 CG9293-RB 416..654 557..319 1165 99.2 Minus
Ing3-RA 2298 CG6632-RA 1997..2149 193..41 210 77.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13386488..13386690 277..479 1015 100 Plus
2L 23513712 2L 13386099..13386259 118..278 805 100 Plus
2L 23513712 2L 13385938..13386036 19..117 495 100 Plus
2L 23513712 2L 13386757..13386834 480..557 360 97.4 Plus
X 23542271 X 18650867..18651019 41..193 210 75.8 Plus
Blast to na_te.dros performed on 2015-02-10 21:13:02 has no hits.

BO17974.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:10 Download gff for BO17974.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9293-PA 313..858 18..562 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:41 Download gff for BO17974.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9293-RA 412..954 19..562 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:31 Download gff for BO17974.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9293-RA 412..954 19..562 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:31 Download gff for BO17974.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13386099..13386257 118..276 100 <- Plus
2L 13386488..13386690 277..479 100 <- Plus
2L 13386757..13386838 480..562 96   Plus
2L 13385938..13386036 19..117 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:41 Download gff for BO17974.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13385938..13386036 19..117 100 <- Plus
arm_2L 13386099..13386257 118..276 100 <- Plus
arm_2L 13386488..13386690 277..479 100 <- Plus
arm_2L 13386757..13386838 480..562 96   Plus

BO17974.complete Sequence

889 bp assembled on 2006-10-11

GenBank Submission: FJ634269

> BO17974.complete
GAAGTTATCAGTCGACATGTCATCGGCTATATACCTAGAGAACTATTTAG
ACGGATTGGAAAGTCTGCCAACGGAGCTGGAGAGAAATTTTAAGCTGATG
CGAAAATTAGACGATCGAGCACAAACAGCGATGAAGAGCATCGATAGCCA
TGCCAAGGACTTTATGCGCAAGCTGGGCGAGAACGGGGCCATGAGCGAGG
ATGAGAGGAGGGAGCGCCAGGAGGATATCAAGGCACTGTTCGGAAAGGCC
AAGGAGTACAGCGACGACAAGGTGCAGCTGGCCATTCAGACCTACGAACT
AGTGGACAAGCAGATACGGCGACTGGACAACGATTTAGCACGCTTCGAGG
GTGAGATTCAGGAGAAGGCCTCATCCACGCGTGCCAAATCCGAGGAAGTG
GTGGCCAAGAAAGGTCGCAAAAAAACCAAGGACAGCAAGACGACGGGCAA
AAAGAAAAAGTCCGCATCCTCGGATGAGGAAACTGGGCGCGGCAACAACC
AATCTAACGCCAATTCCAGTGTCAATTCGAGCAGCAATGCCGGGCAAGGT
AGCAAAAAGAAAAAGTCCAAGGTAAATCAAGAAAAAGAAACTCGCAAGGG
GGGCGCTCAAAAGAAAACCGTCGAGGTTGATGACTCTGAGAAGGAATCGT
GCCACACGGCCGCCACTCATCCCAGCGACGTTATGGACATGCCCGTCGAT
CCCAATGAGCCCACATATTGCCTATGCCACCAGGTGTCCTATGGAGAGAT
GATTGGCTGCGACAATCCCGACTGTCCCATCGAGTGGTTTCACTTCGCTT
GTGTTGGCCTCACCACAAAGCCAAAGGGCAAGTGGTTCTGTCCCAAGTGT
ACGCAGGACAGAAAGAAGAAAGCAAGCTTTCTAGACCAT

BO17974.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9293-RA 858 CG9293-PA 1..855 17..871 4275 100 Plus
CG9293-RB 816 CG9293-PB 1..555 17..571 2775 100 Plus
CG9293-RB 816 CG9293-PB 553..813 611..871 1305 100 Plus
Ing3-RA 2061 CG6632-PA 1869..2021 697..849 210 75.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9293-RA 1044 CG9293-RA 100..954 17..871 4275 100 Plus
CG9293-RB 1002 CG9293-RB 100..654 17..571 2775 100 Plus
CG9293-RB 1002 CG9293-RB 652..912 611..871 1305 100 Plus
Ing3-RA 2298 CG6632-RA 1997..2149 697..849 210 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13386757..13387114 410..53 1790 100 Minus
2L 23513712 2L 13386488..13386690 613..411 1015 100 Minus
2L 23513712 2L 13386099..13386259 772..612 805 100 Minus
2L 23513712 2L 13385938..13386036 871..773 495 100 Minus
X 23542271 X 18650867..18651019 849..697 210 75.8 Minus
2L 23513712 2L 13387176..13387213 54..17 190 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:59:38 has no hits.

BO17974.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:02 Download gff for BO17974.complete
Subject Subject Range Query Range Percent Splice Strand
CG9293-RA 1..858 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:15 Download gff for BO17974.complete
Subject Subject Range Query Range Percent Splice Strand
CG9293-RA 79..941 9..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:10 Download gff for BO17974.complete
Subject Subject Range Query Range Percent Splice Strand
CG9293-RA 100..944 17..861 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:02 Download gff for BO17974.complete
Subject Subject Range Query Range Percent Splice Strand
CG9293-RA 79..941 9..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:24 Download gff for BO17974.complete
Subject Subject Range Query Range Percent Splice Strand
CG9293-RA 100..944 17..861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:24 Download gff for BO17974.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13386488..13386690 411..613 100 <- Minus
2L 13385948..13386036 773..861 100 <- Minus
2L 13386099..13386257 614..772 100 <- Minus
2L 13386757..13387113 54..410 100 <- Minus
2L 13387177..13387213 17..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:10 Download gff for BO17974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13386488..13386690 411..613 100 <- Minus
arm_2L 13385948..13386036 773..861 100 <- Minus
arm_2L 13386099..13386257 614..772 100 <- Minus
arm_2L 13386757..13387113 54..410 100 <- Minus
arm_2L 13387177..13387213 17..53 100   Minus

BO17974.pep Sequence

Translation from 16 to 889

> BO17974.pep
MSSAIYLENYLDGLESLPTELERNFKLMRKLDDRAQTAMKSIDSHAKDFM
RKLGENGAMSEDERRERQEDIKALFGKAKEYSDDKVQLAIQTYELVDKQI
RRLDNDLARFEGEIQEKASSTRAKSEEVVAKKGRKKTKDSKTTGKKKKSA
SSDEETGRGNNQSNANSSVNSSSNAGQGSKKKKSKVNQEKETRKGGAQKK
TVEVDDSEKESCHTAATHPSDVMDMPVDPNEPTYCLCHQVSYGEMIGCDN
PDCPIEWFHFACVGLTTKPKGKWFCPKCTQDRKKKASFLDH

BO17974.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9293-PA 285 CG9293-PA 1..285 1..285 1493 100 Plus
CG9293-PB 271 CG9293-PB 1..271 1..285 1397 95.1 Plus
CG7379-PA 433 CG7379-PA 223..419 112..289 302 36.8 Plus
Ing3-PA 686 CG6632-PA 624..683 228..287 257 61.7 Plus
Ing3-PA 686 CG6632-PA 2..176 5..186 199 30.2 Plus
MESR4-PD 2151 CG4903-PD 2092..2136 234..278 163 55.6 Plus