Clone Sequence Records
BO17976.3prime Sequence
737 bp (665 high quality bases) assembled on 2006-10-13
> BO17976.3prime
ATGGTCTAGAAAGCTTGCATTCAGTTCCAGTATATGTCGGTTTCTTCTTT
GAGGTGAATCATCGTCCTTAATGCCCAACACCTTAATCTGCTTCTGTAAT
GATTTCTCCTCCAAGGCAGATTGTATCAGTTTTGTGCACTTTTTGTTTAA
AATTTTCAGACCGTTTGCAGCATGCTGACGCATTTGAGGATCACAGGATT
CATCCGCTTCAATCGCTTTTAAAAGGCGATAAATGGGGAGTAACATTTCC
TGGTAATCCAGAAGGTTCTCCATGCCGTTTAATAGTTCAGCTAAGACCAG
GACTGCTGCACGCTTAGAGGGAACATATCCTCCGGTGGTTAATTCGCTAT
TAACAAGTTGGAGTAACTCGTGGAAGAAGTTCTGCACTTGAAAGGCCAAA
AGGCGACAAAGCTGGGCAAGATTGGCAAAGGCTGACATCCGGAATTCGTG
AACAGGAGACCGGGAGCCGTACATGAAGCAGTTGAGAAGAACAGCCTTGT
ATCGAAAGCAAAGAGGACCCAACTCCTGAGCGACTTTCAGAATAGCTTCA
CCCACTACGAGGCGGTAGTCTAAGTGAGCCGTCTCTGATAGGTACTCATC
ACTCAATTTGTCCAGCACATCGGACTCCATCACATGAACAAGCGACACAA
AGAGCCGAACACAATTTAAGAAGGTGTAGGATTCCTTATCCTTGAGAGTG
GTCAGGGCTAACGCTATGATAAGTTGACCCTGCGCTA
BO17976.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18398-PA | 2766 | CG18398-RA | 2045..2763 | 737..19 | 3595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango6-RA | 2859 | CG18398-RA | 2116..2834 | 737..19 | 3595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18971479..18971979 | 519..19 | 2505 | 100 | Minus |
| 2L | 23513712 | 2L | 18971201..18971421 | 737..517 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:10:08 has no hits.
BO17976.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:13 Download gff for
BO17976.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18398-PA | 2046..2766 | 15..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:24:19 Download gff for
BO17976.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 2117..2850 | 5..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:49:57 Download gff for
BO17976.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 2117..2850 | 5..736 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:49:57 Download gff for
BO17976.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18971202..18971419 | 519..736 | 100 | -> | Minus |
| 2L | 18971480..18971995 | 5..518 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:24:19 Download gff for
BO17976.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18971202..18971419 | 519..736 | 100 | -> | Minus |
| arm_2L | 18971480..18971995 | 5..518 | 99 | | Minus |
BO17976.5prime Sequence
745 bp (743 high quality bases) assembled on 2006-10-13
> BO17976.5prime
GAAGTTATCAGTCGACATGATAAATACGGCCAAGTACTTTGCTCTTCTAG
AGAGTTTAAGGTTTAGTAAAGCTCTAGCAAATACGGCGAATAACTCAGGG
ACTGCCGAAGCCTTGGAAATCAACCTGCGAATTTTGGAAAAATATGCTAA
ACTCGAGATTGGTCAGCAATTGCATGAGCTGTGCCTGGAATATCAGTTAA
CAGACGATCACGAATCTAGTATTGATCCCGATTCGGATCGTACTATATGC
TATATAATAAGATTGCAACATGTGCTACATTCGATCATGAGGAACATTAA
TTTCCACAGCGACGCCAAGGAGGATCTTATTTCGGTAGCGCACCTGAAAT
TGTGTATCCAGGCTTCCCAAGAATTATCATATTACTCGCTTCGATGCCAG
CTACATGAGGATTTCTACAAGTCGCCCATCTTTTGTGAGGCTCAGGGGAA
AATCAAAGCTAACTTTTCATTGATGCTTCTAAGCATTCAGTTCTTTATTA
ATCTACTGCATATTCGACAATACCACATAGCCAACTCGATGGAGCTGGTG
CAAAGGGATCTACTGGCGGCCATTGTGAGTCTACGTGTGCAGCAAGACTC
TCCACTGCTGGATAAGGCTATAGCCTACCTCTGGCAATATGAATCCAAAG
CAGATTTCTTTCGCAACATCTTGCTTTTTAAAGCTACGACTCTCTGCCCA
ACTCTGGCCCAATTATTGCACCGTCAACTCTTAGGAAAGCTTCAC
BO17976.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18398-PA | 2766 | CG18398-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango6-RA | 2859 | CG18398-RA | 72..800 | 17..745 | 3645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18969216..18969885 | 76..745 | 3350 | 100 | Plus |
| 2L | 23513712 | 2L | 18969099..18969159 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:10:29 has no hits.
BO17976.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:14 Download gff for
BO17976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18398-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:00 Download gff for
BO17976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 72..800 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:56 Download gff for
BO17976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 72..800 | 17..745 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:56 Download gff for
BO17976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18969099..18969159 | 17..77 | 100 | -> | Plus |
| 2L | 18969218..18969885 | 78..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:00 Download gff for
BO17976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18969099..18969159 | 17..77 | 100 | -> | Plus |
| arm_2L | 18969218..18969885 | 78..745 | 100 | | Plus |
BO17976.complete Sequence
2797 bp assembled on 2007-03-23
GenBank Submission: FJ634270
> BO17976.complete
GAAGTTATCAGTCGACATGATAAATACGGCCAAGTACTTTGCTCTTCTAG
AGAGTTTAAGGTTTAGTAAAGCTCTAGCAAATACGGCGAATAACTCAGGG
ACTGCCGAAGCCTTGGAAATCAACCTGCGAATTTTGGAAAAATATGCTAA
ACTCGAGATTGGTCAGCAATTGCATGAGCTGTGCCTGGAATATCAGTTAA
CAGACGATCACGAATCTAGTATTGATCCCGATTCGGATCGTACTATATGC
TATATAATAAGATTGCAACATGTGCTACATTCGATCATGAGGAACATTAA
TTTCCACAGCGACGCCAAGGAGGATCTTATTTCGGTAGCGCACCTGAAAT
TGTGTATCCAGGCTTCCCAAGAATTATCATATTACTCGCTTCGATGCCAG
CTACATGAGGATTTCTACAAGTCGCCCATCTTTTGTGAGGCTCAGGGGAA
AATCAAAGCTAACTTTTCATTGATGCTTCTAAGCATTCAGTTCTTTATTA
ATCTACTGCATATTCGACAATACCACATAGCCAACTCGATGGAGCTGGTG
CAAAGGGATCTACTGGCGGCCATTGTGAGTCTACGTGTGCAGCAAGACTC
TCCACTGCTGGATAAGGCTATAGCCTACCTCTGGCAATATGAATCCAAAG
CAGATTTCTTTCGCAACATCTTGCTTTTTAAAGCTACGACTCTCTGCCCA
ACTCTGGCCCAATTATTGCACCGTCAACTCTTAGGAAAGCTTCACTTACC
CCAAGGATTTGCTAGTCTTGTTGAGGCCCTGCATCAAAATCCCAATGTGA
ATTCTTCCAGAAATGCGGAAATTGTGGCTAGTATTGTGGCCAGAAAAGGA
TTTTCTCAGTTAGCGCAAGAGAAGATGGTTCTCCAGGTGCTAGAATATTG
TAAGTTCTATCTGCAGAATGCGGACAAAATGTGCGCCGGTGTCCTATCGC
TCAGAAGACTTTACGATTTAAGTGATACAAATCAAAAGCTGATAAAAGAA
ATATTATTCAAACACTGGGAAACGCTTTGTAACCCAGAAGACATTATTAA
TGGCCTTATCTTAATGGATCACCAGGAACTGTGCAATCGCATTCTCTTAT
GGCAGCATCTCTTTTGTTCTTCAACCGTAGCTTGCTTACCCAGTAATCTA
CTCGTTCCCTACCTTCCTTTGCTGCTCCAACTCTACGATGGCCTTCCAAT
GGAATTACCGGCGTCATCGCAGATTTCTGCCATTATTTTGCGTTGTCTGG
ACAACAGAGAAATGAAAAACGAATTACCTGCGATACTCCAGAAGCTGTTT
AAATGGGAAATTGAGAAGGAACCTCCTTGGAAGTGTTTAAACCCACGCAT
TATAATCCTGCCTTCCATGAACACAACTCAAATTCAGGTTAAAGTAGCTC
ACAAAGATCATCTAGCAGATCACGATATGGGCAGAATATTGCCCGGTCTA
CTCACATCAAGCTCTCATCATTCCCTCACCTGCAAAGTTTTCCTCTCTCT
TCTGGGCTTCATAGCTAAACAGATAAATGATAAATCTTCAGCCAGCGTAG
ATTTTATTTCATCAGAAGCAGAGCTCAAAGACTTTCTGCACTCCAAATAT
CAACTGAAGCTAGATTTGCTCATTGCTTTAAACCAAATGGTAGCCCACCA
ACCATTAAGAGCTCAGCTATCACAACATACCAAGGAGCTTCTACATATAC
TAAAAGACTTGCTTGTCCACCGATCTAGAGAGCAAGATACCACGGATCAG
ATCCTACTTCTCGTTCTAAACCTCTTGCAGGAAATTCTTGAGGGCAGTGA
GAATATTCAACTTTCAGAGGCCTGTAAGGAACTGAAAGAACAATTGCACC
TGTTGGGTACTCGATCTTCCAACCCTCTTATCCAGCAATCTGTAAAATCA
TTGCTTACAATAATTCACGGCGCATGGCGACCAAGTGAGGCTGTTAAAAT
ACAACCTTTTCAAAGAGCTCGGTCCTTGATAGAGGAAAAACAATCCCACA
TGCAAGTGTATGGAATTCAGATGATGATTGATTTGCTGAAAAAAAGAGAT
CCTGCTACCTTAGCGCAGGGTCAACTTATCATAGCGTTAGCCCTGACCAC
TCTCAAGGATAAGGAATCCTACACCTTCTTAAATTGTGTTCGGCTCTTTG
TGTCGCTTGTTCATGTGATGGAGTCCGATGTGCTGGACAAATTGAGTGAT
GAGTACCTATCAGAGACGGCTCACTTAGACTACCGCCTCGTAGTGGGTGA
AGCTATTCTGAAAGTCGCTCAGGAGTTGGGTCCTCTTTGCTTTCGATACA
AGGCTGTTCTTCTCAACTGCTTCATGTACGGCTCCCGGTCTCCTGTTCAC
GAATTCCGGATGTCAGCCTTTGCCAATCTTGCCCAGCTTTGTCGCCTTTT
GGCCTTTCAAGTGCAGAACTTCTTCCACGAGTTACTCCAACTTGTTAATA
GCGAATTAACCACCGGAGGATATGTTCCCTCTAAGCGTGCAGCAGTCCTG
GTCTTAGCTGAACTATTAAACGGCATGGAGAACCTTCTGGATTACCAGGA
AATGTTACTCCCCATTTATCGCCTTTTAAAAGCGATTGAAGCGGATGAAT
CCTGTGATCCTCAAATGCGTCAGCATGCTGCAAACGGTCTGAAAATTTTA
AACAAAAAGTGCACAAAACTGATACAATCTGCCTTGGAGGAGAAATCATT
ACAGAAGCAGATTAAGGTGTTGGGCATTAAGGACGATGATTCACCTCAAA
GAAGAAACCGACATATACTGGAACTGAATGCAAGCTTTCTAGACCAT
BO17976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango6-RA | 2766 | CG18398-PA | 1..2763 | 17..2779 | 13815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango6-RA | 2859 | CG18398-RA | 72..2834 | 17..2779 | 13815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18969216..18971421 | 76..2281 | 11030 | 100 | Plus |
| 2L | 23513712 | 2L | 18971479..18971979 | 2279..2779 | 2505 | 100 | Plus |
| 2L | 23513712 | 2L | 18969099..18969159 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:41:57 has no hits.
BO17976.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:49 Download gff for
BO17976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 1..2766 | 17..2783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:03 Download gff for
BO17976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 68..2846 | 17..2793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:14 Download gff for
BO17976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 72..2834 | 17..2781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:49 Download gff for
BO17976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 68..2846 | 17..2793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:47 Download gff for
BO17976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango6-RA | 72..2834 | 17..2781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:47 Download gff for
BO17976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18969099..18969159 | 17..77 | 100 | -> | Plus |
| 2L | 18969218..18971419 | 78..2279 | 100 | -> | Plus |
| 2L | 18971480..18971979 | 2280..2781 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:14 Download gff for
BO17976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18971480..18971979 | 2280..2781 | 99 | | Plus |
| arm_2L | 18969099..18969159 | 17..77 | 100 | -> | Plus |
| arm_2L | 18969218..18971419 | 78..2279 | 100 | -> | Plus |
BO17976.pep Sequence
Translation from 16 to 2797
> BO17976.pep
MINTAKYFALLESLRFSKALANTANNSGTAEALEINLRILEKYAKLEIGQ
QLHELCLEYQLTDDHESSIDPDSDRTICYIIRLQHVLHSIMRNINFHSDA
KEDLISVAHLKLCIQASQELSYYSLRCQLHEDFYKSPIFCEAQGKIKANF
SLMLLSIQFFINLLHIRQYHIANSMELVQRDLLAAIVSLRVQQDSPLLDK
AIAYLWQYESKADFFRNILLFKATTLCPTLAQLLHRQLLGKLHLPQGFAS
LVEALHQNPNVNSSRNAEIVASIVARKGFSQLAQEKMVLQVLEYCKFYLQ
NADKMCAGVLSLRRLYDLSDTNQKLIKEILFKHWETLCNPEDIINGLILM
DHQELCNRILLWQHLFCSSTVACLPSNLLVPYLPLLLQLYDGLPMELPAS
SQISAIILRCLDNREMKNELPAILQKLFKWEIEKEPPWKCLNPRIIILPS
MNTTQIQVKVAHKDHLADHDMGRILPGLLTSSSHHSLTCKVFLSLLGFIA
KQINDKSSASVDFISSEAELKDFLHSKYQLKLDLLIALNQMVAHQPLRAQ
LSQHTKELLHILKDLLVHRSREQDTTDQILLLVLNLLQEILEGSENIQLS
EACKELKEQLHLLGTRSSNPLIQQSVKSLLTIIHGAWRPSEAVKIQPFQR
ARSLIEEKQSHMQVYGIQMMIDLLKKRDPATLAQGQLIIALALTTLKDKE
SYTFLNCVRLFVSLVHVMESDVLDKLSDEYLSETAHLDYRLVVGEAILKV
AQELGPLCFRYKAVLLNCFMYGSRSPVHEFRMSAFANLAQLCRLLAFQVQ
NFFHELLQLVNSELTTGGYVPSKRAAVLVLAELLNGMENLLDYQEMLLPI
YRLLKAIEADESCDPQMRQHAANGLKILNKKCTKLIQSALEEKSLQKQIK
VLGIKDDDSPQRRNRHILELNASFLDH
BO17976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango6-PA | 921 | CG18398-PA | 1..921 | 1..921 | 4678 | 100 | Plus |
