Clone Sequence Records
BO17982.3prime Sequence
422 bp (422 high quality bases) assembled on 2006-10-13
> BO17982.3prime
ATGGTCTAGAAAGCTTGCGTGATGACGGGGGTGCTCGGGTGCTGGTGGGT
GGGACTCCAGCCAGGCGACGGCGCGGGCGATGGCCTCTGGGATTGGAGGA
GGAGTGGGGATCCAGGCTCCCGAGGGCTGGTATCCGTTCTCATTGGCGAC
GTACTTAACCTCGACGTGCTCGCCCTCGGGTGAGATCCAGCCGAAGTTGC
CGTGGATGTTGCCATGGGCATCACCGCTGGCGGCCTGCTCGATTCCGTTG
GAGGTGTGCAGGCTGGAATCGAATCCATCGGCACGAACATCATCGGATTG
GGAAAGGACATCGGCGTGGACATCCTCCGAACGGCCTAGGGAATGGGGCA
CCGGGGGGTTGGCCACCGCCAGGCCCAAAACTGCGCAGATCATGACAAAC
TTGAACATGTCGACTGATAACT
BO17982.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11650-PA | 393 | Lcp1-RA | 1..390 | 408..19 | 1950 | 100 | Minus |
CG8697-PA | 381 | Lcp2-RA | 73..378 | 324..19 | 1130 | 94.7 | Minus |
CG2044-PA | 339 | Lcp4-RA | 265..294 | 108..79 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp1-RB | 1065 | CG11650-RB | 43..432 | 408..19 | 1950 | 100 | Minus |
Lcp1-RA | 543 | CG11650-RA | 43..432 | 408..19 | 1950 | 100 | Minus |
Lcp2-RB | 927 | CG8697-RB | 315..630 | 334..19 | 1295 | 94 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8430748..8431125 | 19..396 | 1890 | 100 | Plus |
2R | 25286936 | 2R | 8434094..8434409 | 19..334 | 1295 | 94 | Plus |
2R | 25286936 | 2R | 8433018..8433250 | 89..317 | 270 | 76.4 | Plus |
3L | 28110227 | 3L | 10890418..10890523 | 184..79 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:39:18 has no hits.
BO17982.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:21 Download gff for
BO17982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11650-PA | 1..393 | 18..408 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:44 Download gff for
BO17982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp1-RA | 23..421 | 19..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:34 Download gff for
BO17982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp1-RA | 34..432 | 19..417 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:34 Download gff for
BO17982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8430748..8431125 | 19..396 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:44 Download gff for
BO17982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4318253..4318630 | 19..396 | 100 | <- | Plus |
BO17982.5prime Sequence
422 bp (422 high quality bases) assembled on 2006-10-13
> BO17982.5prime
GAAGTTATCAGTCGACATGTTCAAGTTTGTCATGATCTGCGCAGTTTTGG
GCCTGGCGGTGGCCAACCCCCCGGTGCCCCATTCCCTAGGCCGTTCGGAG
GATGTCCACGCCGATGTCCTTTCCCAATCCGATGATGTTCGTGCCGATGG
ATTCGATTCCAGCCTGCACACCTCCAACGGAATCGAGCAGGCCGCCAGCG
GTGATGCCCATGGCAACATCCACGGCAACTTCGGCTGGATCTCACCCGAG
GGCGAGCACGTCGAGGTTAAGTACGTCGCCAATGAGAACGGATACCAGCC
CTCGGGAGCCTGGATCCCCACTCCTCCTCCAATCCCAGAGGCCATCGCCC
GCGCCGTCGCCTGGCTGGAGTCCCACCCACCAGCACCCGAGCACCCCCGT
CATCACGCAAGCTTTCTAGACC
BO17982.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11650-PA | 393 | Lcp1-RA | 1..390 | 17..406 | 1950 | 100 | Plus |
CG8697-PA | 381 | Lcp2-RA | 73..378 | 101..406 | 1130 | 94.7 | Plus |
CG2044-PA | 339 | Lcp4-RA | 265..294 | 317..346 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp1-RB | 1065 | CG11650-RB | 43..432 | 17..406 | 1950 | 100 | Plus |
Lcp1-RA | 543 | CG11650-RA | 43..432 | 17..406 | 1950 | 100 | Plus |
Lcp2-RB | 927 | CG8697-RB | 315..630 | 91..406 | 1295 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8430748..8431125 | 406..29 | 1890 | 100 | Minus |
2R | 25286936 | 2R | 8434094..8434409 | 406..91 | 1295 | 94 | Minus |
2R | 25286936 | 2R | 8433018..8433250 | 336..108 | 270 | 76.4 | Minus |
3L | 28110227 | 3L | 10890418..10890523 | 241..346 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:41:27 has no hits.
BO17982.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:22 Download gff for
BO17982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11650-PA | 1..393 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:09 Download gff for
BO17982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp1-RA | 23..421 | 8..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:31 Download gff for
BO17982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp1-RA | 34..432 | 8..406 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:31 Download gff for
BO17982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8430748..8431125 | 29..406 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:09 Download gff for
BO17982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4318253..4318630 | 29..406 | 100 | <- | Minus |
BO17982.complete Sequence
424 bp assembled on 2006-10-11
GenBank Submission: FJ634271
> BO17982.complete
GAAGTTATCAGTCGACATGTTCAAGTTTGTCATGATCTGCGCAGTTTTGG
GCCTGGCGGTGGCCAACCCCCCGGTGCCCCATTCCCTAGGCCGTTCGGAG
GATGTCCACGCCGATGTCCTTTCCCAATCCGATGATGTTCGTGCCGATGG
ATTCGATTCCAGCCTGCACACCTCCAACGGAATCGAGCAGGCCGCCAGCG
GTGATGCCCATGGCAACATCCACGGCAACTTCGGCTGGATCTCACCCGAG
GGCGAGCACGTCGAGGTTAAGTACGTCGCCAATGAGAACGGATACCAGCC
CTCGGGAGCCTGGATCCCCACTCCTCCTCCAATCCCAGAGGCCATCGCCC
GCGCCGTCGCCTGGCTGGAGTCCCACCCACCAGCACCCGAGCACCCCCGT
CATCACGCAAGCTTTCTAGACCAT
BO17982.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp1-RB | 393 | CG11650-PB | 1..390 | 17..406 | 1950 | 100 | Plus |
Lcp1-RA | 393 | CG11650-PA | 1..390 | 17..406 | 1950 | 100 | Plus |
Lcp2-RB | 381 | CG8697-PB | 63..378 | 91..406 | 1295 | 94 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp1-RB | 1065 | CG11650-RB | 43..432 | 17..406 | 1950 | 100 | Plus |
Lcp1-RA | 543 | CG11650-RA | 43..432 | 17..406 | 1950 | 100 | Plus |
Lcp2-RB | 927 | CG8697-RB | 315..630 | 91..406 | 1295 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8430748..8431125 | 406..29 | 1890 | 100 | Minus |
2R | 25286936 | 2R | 8434094..8434409 | 406..91 | 1295 | 94 | Minus |
2R | 25286936 | 2R | 8433018..8433250 | 336..108 | 270 | 76.4 | Minus |
3L | 28110227 | 3L | 10890418..10890523 | 241..346 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:25:25 has no hits.
BO17982.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:31 Download gff for
BO17982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp1-RA | 1..393 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:07 Download gff for
BO17982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp1-RA | 23..421 | 8..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:31 Download gff for
BO17982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp1-RA | 37..421 | 22..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:31 Download gff for
BO17982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp1-RA | 23..421 | 8..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:06 Download gff for
BO17982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp1-RA | 48..432 | 22..408 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:06 Download gff for
BO17982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8430746..8431128 | 22..408 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:31 Download gff for
BO17982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4318251..4318633 | 22..408 | 98 | | Minus |
BO17982.pep Sequence
Translation from 16 to 424
> BO17982.pep
MFKFVMICAVLGLAVANPPVPHSLGRSEDVHADVLSQSDDVRADGFDSSL
HTSNGIEQAASGDAHGNIHGNFGWISPEGEHVEVKYVANENGYQPSGAWI
PTPPPIPEAIARAVAWLESHPPAPEHPRHHASFLDH
BO17982.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp1-PB | 130 | CG11650-PB | 1..130 | 1..130 | 712 | 100 | Plus |
Lcp1-PA | 130 | CG11650-PA | 1..130 | 1..130 | 712 | 100 | Plus |
Lcp2-PB | 126 | CG8697-PB | 1..126 | 1..130 | 624 | 90 | Plus |
Lcp2-PA | 126 | CG8697-PA | 1..126 | 1..130 | 624 | 90 | Plus |
Lcp4-PB | 112 | CG2044-PB | 1..109 | 1..121 | 310 | 48.8 | Plus |