Clone BO17982 Report

Search the DGRC for BO17982

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptLcp1-RA
Protein status:BO17982.pep: validated full length
Sequenced Size:424

Clone Sequence Records

BO17982.3prime Sequence

422 bp (422 high quality bases) assembled on 2006-10-13

> BO17982.3prime
ATGGTCTAGAAAGCTTGCGTGATGACGGGGGTGCTCGGGTGCTGGTGGGT
GGGACTCCAGCCAGGCGACGGCGCGGGCGATGGCCTCTGGGATTGGAGGA
GGAGTGGGGATCCAGGCTCCCGAGGGCTGGTATCCGTTCTCATTGGCGAC
GTACTTAACCTCGACGTGCTCGCCCTCGGGTGAGATCCAGCCGAAGTTGC
CGTGGATGTTGCCATGGGCATCACCGCTGGCGGCCTGCTCGATTCCGTTG
GAGGTGTGCAGGCTGGAATCGAATCCATCGGCACGAACATCATCGGATTG
GGAAAGGACATCGGCGTGGACATCCTCCGAACGGCCTAGGGAATGGGGCA
CCGGGGGGTTGGCCACCGCCAGGCCCAAAACTGCGCAGATCATGACAAAC
TTGAACATGTCGACTGATAACT

BO17982.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11650-PA 393 Lcp1-RA 1..390 408..19 1950 100 Minus
CG8697-PA 381 Lcp2-RA 73..378 324..19 1130 94.7 Minus
CG2044-PA 339 Lcp4-RA 265..294 108..79 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp1-RB 1065 CG11650-RB 43..432 408..19 1950 100 Minus
Lcp1-RA 543 CG11650-RA 43..432 408..19 1950 100 Minus
Lcp2-RB 927 CG8697-RB 315..630 334..19 1295 94 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8430748..8431125 19..396 1890 100 Plus
2R 25286936 2R 8434094..8434409 19..334 1295 94 Plus
2R 25286936 2R 8433018..8433250 89..317 270 76.4 Plus
3L 28110227 3L 10890418..10890523 184..79 200 79.2 Minus
Blast to na_te.dros performed on 2015-02-12 17:39:18 has no hits.

BO17982.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:21 Download gff for BO17982.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11650-PA 1..393 18..408 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:44 Download gff for BO17982.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 23..421 19..417 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:34 Download gff for BO17982.3prime
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 34..432 19..417 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:34 Download gff for BO17982.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8430748..8431125 19..396 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:44 Download gff for BO17982.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4318253..4318630 19..396 100 <- Plus

BO17982.5prime Sequence

422 bp (422 high quality bases) assembled on 2006-10-13

> BO17982.5prime
GAAGTTATCAGTCGACATGTTCAAGTTTGTCATGATCTGCGCAGTTTTGG
GCCTGGCGGTGGCCAACCCCCCGGTGCCCCATTCCCTAGGCCGTTCGGAG
GATGTCCACGCCGATGTCCTTTCCCAATCCGATGATGTTCGTGCCGATGG
ATTCGATTCCAGCCTGCACACCTCCAACGGAATCGAGCAGGCCGCCAGCG
GTGATGCCCATGGCAACATCCACGGCAACTTCGGCTGGATCTCACCCGAG
GGCGAGCACGTCGAGGTTAAGTACGTCGCCAATGAGAACGGATACCAGCC
CTCGGGAGCCTGGATCCCCACTCCTCCTCCAATCCCAGAGGCCATCGCCC
GCGCCGTCGCCTGGCTGGAGTCCCACCCACCAGCACCCGAGCACCCCCGT
CATCACGCAAGCTTTCTAGACC

BO17982.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11650-PA 393 Lcp1-RA 1..390 17..406 1950 100 Plus
CG8697-PA 381 Lcp2-RA 73..378 101..406 1130 94.7 Plus
CG2044-PA 339 Lcp4-RA 265..294 317..346 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp1-RB 1065 CG11650-RB 43..432 17..406 1950 100 Plus
Lcp1-RA 543 CG11650-RA 43..432 17..406 1950 100 Plus
Lcp2-RB 927 CG8697-RB 315..630 91..406 1295 94 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8430748..8431125 406..29 1890 100 Minus
2R 25286936 2R 8434094..8434409 406..91 1295 94 Minus
2R 25286936 2R 8433018..8433250 336..108 270 76.4 Minus
3L 28110227 3L 10890418..10890523 241..346 200 79.2 Plus
Blast to na_te.dros performed on 2015-02-08 11:41:27 has no hits.

BO17982.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:22 Download gff for BO17982.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11650-PA 1..393 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:09 Download gff for BO17982.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 23..421 8..406 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:31 Download gff for BO17982.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 34..432 8..406 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:31 Download gff for BO17982.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8430748..8431125 29..406 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:09 Download gff for BO17982.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4318253..4318630 29..406 100 <- Minus

BO17982.complete Sequence

424 bp assembled on 2006-10-11

GenBank Submission: FJ634271

> BO17982.complete
GAAGTTATCAGTCGACATGTTCAAGTTTGTCATGATCTGCGCAGTTTTGG
GCCTGGCGGTGGCCAACCCCCCGGTGCCCCATTCCCTAGGCCGTTCGGAG
GATGTCCACGCCGATGTCCTTTCCCAATCCGATGATGTTCGTGCCGATGG
ATTCGATTCCAGCCTGCACACCTCCAACGGAATCGAGCAGGCCGCCAGCG
GTGATGCCCATGGCAACATCCACGGCAACTTCGGCTGGATCTCACCCGAG
GGCGAGCACGTCGAGGTTAAGTACGTCGCCAATGAGAACGGATACCAGCC
CTCGGGAGCCTGGATCCCCACTCCTCCTCCAATCCCAGAGGCCATCGCCC
GCGCCGTCGCCTGGCTGGAGTCCCACCCACCAGCACCCGAGCACCCCCGT
CATCACGCAAGCTTTCTAGACCAT

BO17982.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp1-RB 393 CG11650-PB 1..390 17..406 1950 100 Plus
Lcp1-RA 393 CG11650-PA 1..390 17..406 1950 100 Plus
Lcp2-RB 381 CG8697-PB 63..378 91..406 1295 94 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp1-RB 1065 CG11650-RB 43..432 17..406 1950 100 Plus
Lcp1-RA 543 CG11650-RA 43..432 17..406 1950 100 Plus
Lcp2-RB 927 CG8697-RB 315..630 91..406 1295 94 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8430748..8431125 406..29 1890 100 Minus
2R 25286936 2R 8434094..8434409 406..91 1295 94 Minus
2R 25286936 2R 8433018..8433250 336..108 270 76.4 Minus
3L 28110227 3L 10890418..10890523 241..346 200 79.2 Plus
Blast to na_te.dros performed on 2014-11-27 20:25:25 has no hits.

BO17982.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:31 Download gff for BO17982.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 1..393 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:07 Download gff for BO17982.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 23..421 8..406 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:31 Download gff for BO17982.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 37..421 22..408 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:31 Download gff for BO17982.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 23..421 8..406 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:06 Download gff for BO17982.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp1-RA 48..432 22..408 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:06 Download gff for BO17982.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8430746..8431128 22..408 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:31 Download gff for BO17982.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4318251..4318633 22..408 98   Minus

BO17982.pep Sequence

Translation from 16 to 424

> BO17982.pep
MFKFVMICAVLGLAVANPPVPHSLGRSEDVHADVLSQSDDVRADGFDSSL
HTSNGIEQAASGDAHGNIHGNFGWISPEGEHVEVKYVANENGYQPSGAWI
PTPPPIPEAIARAVAWLESHPPAPEHPRHHASFLDH

BO17982.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp1-PB 130 CG11650-PB 1..130 1..130 712 100 Plus
Lcp1-PA 130 CG11650-PA 1..130 1..130 712 100 Plus
Lcp2-PB 126 CG8697-PB 1..126 1..130 624 90 Plus
Lcp2-PA 126 CG8697-PA 1..126 1..130 624 90 Plus
Lcp4-PB 112 CG2044-PB 1..109 1..121 310 48.8 Plus