Clone BO17983 Report

Search the DGRC for BO17983

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptbetaTry-RA
Protein status:BO17983.pep: validated full length
Sequenced Size:793

Clone Sequence Records

BO17983.3prime Sequence

791 bp (693 high quality bases) assembled on 2006-10-13

> BO17983.3prime
ATGGTCTAGAAAGCTTGCGGCGTTGTTGATCACCCAGGAGCGGAGGGCAG
CAACATCGGCATAGACACCGGGGTAGTTAGCGGCAGCACATCCGTATCCC
CAGGAGACAACACCGACGAGGACTCCGCCGGAGACCAGTGGGCCACCGGA
GTCACCCTGGCACGAGTCCTTGCCGCTGGCAAAAGCGCAGATCATGGAGC
TCTTGATCTGGTTTCCGTAGCCATAGGAGGAAGAAGAGCACCGGCTCTGG
CTGACGATGTTCACGTTGACATAACGCAGCTGGGAGGGAATGGAGCTGGA
GCCAGAGGACTCGGTACCCCATCCGGAGACGGAGGCAGCAGCACCGTTGG
CGGGGTTGGAGCTAGCCAGACCGATGGCCTTGATGGTGGAGCTGAAGCTC
AGAGAGGAGCTCAGATGGAGCACAGCGATGTCGTTGACCATGGTGTTGGC
GTTGTAACCCTCGTGGTTCTTGAAAGAGGAAACCTTGGCGACGACGCCAC
CAGAGCTCCAGTAGCTGGATCCGGCGCGGATCTGCAGGGAGGAGGCGGAC
ACGGACTGCAGGCAGTGAGCGGCGGTCACGATCACCCTGGCGGAGTAGAT
GGATCCACCGCAGGAGTGGCTGCCACTGCGCTGCAGGGAGATCTGCCAGG
GGAAGCTGCTGATGGTGGTAGCAGTACCGCCGACAATGCGGCCATCCAAC
TGGGGCAGGAGACCCTCGGGGATGGTGCCTCCCAGGGCGCAGGCTACAGC
CGACAACAGGATCAGGAACTTCAGCATGTCGACTGATAACT

BO17983.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG18211-PA 762 betaTry-RA 1..759 777..19 3795 100 Minus
CG30025-PA 762 CG30025-RA 1..186 777..592 655 94 Minus
CG12351-PA 762 deltaTry-RA 1..186 777..592 655 94 Minus
CG30031-PA 762 CG30031-RA 1..186 777..592 655 94 Minus
CG30028-PA 762 gammaTry-RA 1..186 777..592 655 94 Minus
CG18444-PA 771 alphaTry-RA 36..185 742..593 600 96 Minus
CG18444-PA 771 alphaTry-RA 240..401 538..377 485 91.9 Minus
CG30025-PA 762 CG30025-RA 616..689 162..89 370 100 Minus
CG12351-PA 762 deltaTry-RA 616..689 162..89 370 100 Minus
CG30031-PA 762 CG30031-RA 616..689 162..89 370 100 Minus
CG30028-PA 762 gammaTry-RA 616..689 162..89 370 100 Minus
CG18444-PA 771 alphaTry-RA 616..689 162..89 370 100 Minus
CG30025-PA 762 CG30025-RA 381..461 397..317 355 97.5 Minus
CG12351-PA 762 deltaTry-RA 381..461 397..317 355 97.5 Minus
CG30031-PA 762 CG30031-RA 381..461 397..317 355 97.5 Minus
CG30028-PA 762 gammaTry-RA 381..461 397..317 355 97.5 Minus
CG30025-PA 762 CG30025-RA 700..759 78..19 300 100 Minus
CG30025-PA 762 CG30025-RA 196..275 582..503 250 92.5 Minus
CG12351-PA 762 deltaTry-RA 196..275 582..503 250 92.5 Minus
CG30031-PA 762 CG30031-RA 196..275 582..503 250 92.5 Minus
CG30028-PA 762 gammaTry-RA 196..275 582..503 250 92.5 Minus
CG12351-PA 762 deltaTry-RA 700..746 78..32 235 100 Minus
CG30031-PA 762 CG30031-RA 700..746 78..32 235 100 Minus
CG30028-PA 762 gammaTry-RA 700..746 78..32 235 100 Minus
CG30025-PA 762 CG30025-RA 298..350 480..428 215 96.2 Minus
CG12351-PA 762 deltaTry-RA 298..350 480..428 215 96.2 Minus
CG30031-PA 762 CG30031-RA 298..350 480..428 215 96.2 Minus
CG30028-PA 762 gammaTry-RA 298..350 480..428 215 96.2 Minus
CG18444-PA 771 alphaTry-RA 700..747 78..31 190 95.8 Minus
CG18444-PA 771 alphaTry-RA 199..233 579..545 150 97.1 Minus
CG18681-PA 771 epsilonTry-RA 616..650 162..128 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
betaTry-RB 1071 CG18211-RB 17..776 778..19 3800 100 Minus
betaTry-RA 813 CG18211-RA 17..776 778..19 3800 100 Minus
CG30025-RA 810 CG30025-RA 14..773 778..19 2465 88.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11346341..11347100 778..19 3800 100 Minus
2R 25286936 2R 11353601..11354360 19..778 2465 88.3 Plus
2R 25286936 2R 11349097..11349856 19..778 2405 87.8 Plus
2R 25286936 2R 11350826..11351585 778..19 2405 87.8 Minus
2R 25286936 2R 11355332..11356091 778..19 2405 87.8 Minus
2R 25286936 2R 11344346..11345093 31..778 2390 88 Plus
2R 25286936 2R 11345694..11346014 424..744 285 72.6 Plus
2R 25286936 2R 11345320..11345489 50..219 280 77.6 Plus
Blast to na_te.dros performed on 2015-02-10 21:03:58 has no hits.

BO17983.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:22 Download gff for BO17983.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18211-PA 1..762 15..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:42 Download gff for BO17983.3prime
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..771 11..782 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:06 Download gff for BO17983.3prime
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 7..781 11..786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:06 Download gff for BO17983.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11346331..11347105 11..786 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:42 Download gff for BO17983.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7233836..7234610 11..786 99   Minus

BO17983.5prime Sequence

791 bp (757 high quality bases) assembled on 2006-10-13

> BO17983.5prime
GAAGTTATCAGTCGACATGCTGAAGTTCCTGATCCTGTTGTCGGCTGTAG
CCTGCGCCCTGGGAGGCACCATCCCCGAGGGTCTCCTGCCCCAGTTGGAT
GGCCGCATTGTCGGCGGTACTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CCGCCAGGGTGATCGTGACCGCCGCTCACTGCCTGCAGTCCGTGTCCGCC
TCCTCCCTGCAGATCCGCGCCGGATCCAGCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGTTACAACGCCAACA
CCATGGTCAACGACATCGCTGTGCTCCATCTGAGCTCCTCTCTGAGCTTC
AGCTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGG
TGCTGCTGCCTCCGTCTCCGGATGGGGTACCGAGTCCTCTGGCTCCAGCT
CCATTCCCTCCCAGCTGCGTTATGTCAACGTGAACATCGTCAGCCAGAGC
CGGTGCTCTTCTTCCTCCTATGGCTACGGAAACCAGATCAAGAGCTCCAT
GATCTGCGCTTTTGCCAGCGGCAAGGACTCGTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGTGCTGCCGCTAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCT
CCGCTCCTGGGTGATCAACAACGCCGCAAGCTTTCTAGACC

BO17983.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18211-PA 762 betaTry-RA 1..759 17..775 3795 100 Plus
CG30025-PA 762 CG30025-RA 1..186 17..202 655 94 Plus
CG12351-PA 762 deltaTry-RA 1..186 17..202 655 94 Plus
CG30031-PA 762 CG30031-RA 1..186 17..202 655 94 Plus
CG30028-PA 762 gammaTry-RA 1..186 17..202 655 94 Plus
CG18444-PA 771 alphaTry-RA 36..185 52..201 600 96 Plus
CG18444-PA 771 alphaTry-RA 240..401 256..417 485 91.9 Plus
CG30025-PA 762 CG30025-RA 616..689 632..705 370 100 Plus
CG12351-PA 762 deltaTry-RA 616..689 632..705 370 100 Plus
CG30031-PA 762 CG30031-RA 616..689 632..705 370 100 Plus
CG30028-PA 762 gammaTry-RA 616..689 632..705 370 100 Plus
CG18444-PA 771 alphaTry-RA 616..689 632..705 370 100 Plus
CG30025-PA 762 CG30025-RA 381..461 397..477 355 97.5 Plus
CG12351-PA 762 deltaTry-RA 381..461 397..477 355 97.5 Plus
CG30031-PA 762 CG30031-RA 381..461 397..477 355 97.5 Plus
CG30028-PA 762 gammaTry-RA 381..461 397..477 355 97.5 Plus
CG30025-PA 762 CG30025-RA 700..759 716..775 300 100 Plus
CG30025-PA 762 CG30025-RA 196..275 212..291 250 92.5 Plus
CG12351-PA 762 deltaTry-RA 196..275 212..291 250 92.5 Plus
CG30031-PA 762 CG30031-RA 196..275 212..291 250 92.5 Plus
CG30028-PA 762 gammaTry-RA 196..275 212..291 250 92.5 Plus
CG12351-PA 762 deltaTry-RA 700..746 716..762 235 100 Plus
CG30031-PA 762 CG30031-RA 700..746 716..762 235 100 Plus
CG30028-PA 762 gammaTry-RA 700..746 716..762 235 100 Plus
CG30025-PA 762 CG30025-RA 298..350 314..366 215 96.2 Plus
CG12351-PA 762 deltaTry-RA 298..350 314..366 215 96.2 Plus
CG30031-PA 762 CG30031-RA 298..350 314..366 215 96.2 Plus
CG30028-PA 762 gammaTry-RA 298..350 314..366 215 96.2 Plus
CG18444-PA 771 alphaTry-RA 700..747 716..763 190 95.8 Plus
CG18444-PA 771 alphaTry-RA 199..233 215..249 150 97.1 Plus
CG18681-PA 771 epsilonTry-RA 616..650 632..666 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
betaTry-RB 1071 CG18211-RB 17..776 16..775 3800 100 Plus
betaTry-RA 813 CG18211-RA 17..776 16..775 3800 100 Plus
CG30025-RA 810 CG30025-RA 14..773 16..775 2465 88.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11346341..11347100 16..775 3800 100 Plus
2R 25286936 2R 11353601..11354360 775..16 2465 88.3 Minus
2R 25286936 2R 11349097..11349856 775..16 2405 87.8 Minus
2R 25286936 2R 11350826..11351585 16..775 2405 87.8 Plus
2R 25286936 2R 11355332..11356091 16..775 2405 87.8 Plus
2R 25286936 2R 11344346..11345093 763..16 2390 88 Minus
2R 25286936 2R 11345694..11346014 370..50 285 72.6 Minus
2R 25286936 2R 11345320..11345489 744..575 280 77.6 Minus
Blast to na_te.dros performed on 2015-01-30 17:39:45 has no hits.

BO17983.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:24 Download gff for BO17983.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18211-PA 1..762 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:45 Download gff for BO17983.5prime
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..771 12..783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:57 Download gff for BO17983.5prime
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 7..781 8..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:57 Download gff for BO17983.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11346331..11347105 8..783 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:45 Download gff for BO17983.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7233836..7234610 8..783 99   Plus

BO17983.complete Sequence

793 bp assembled on 2006-10-11

GenBank Submission: FJ634272

> BO17983.complete
GAAGTTATCAGTCGACATGCTGAAGTTCCTGATCCTGTTGTCGGCTGTAG
CCTGCGCCCTGGGAGGCACCATCCCCGAGGGTCTCCTGCCCCAGTTGGAT
GGCCGCATTGTCGGCGGTACTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CCGCCAGGGTGATCGTGACCGCCGCTCACTGCCTGCAGTCCGTGTCCGCC
TCCTCCCTGCAGATCCGCGCCGGATCCAGCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGTTACAACGCCAACA
CCATGGTCAACGACATCGCTGTGCTCCATCTGAGCTCCTCTCTGAGCTTC
AGCTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGG
TGCTGCTGCCTCCGTCTCCGGATGGGGTACCGAGTCCTCTGGCTCCAGCT
CCATTCCCTCCCAGCTGCGTTATGTCAACGTGAACATCGTCAGCCAGAGC
CGGTGCTCTTCTTCCTCCTATGGCTACGGAAACCAGATCAAGAGCTCCAT
GATCTGCGCTTTTGCCAGCGGCAAGGACTCGTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGTGCTGCCGCTAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCT
CCGCTCCTGGGTGATCAACAACGCCGCAAGCTTTCTAGACCAT

BO17983.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
betaTry-RB 762 CG18211-PB 1..759 17..775 3795 100 Plus
betaTry-RA 762 CG18211-PA 1..759 17..775 3795 100 Plus
CG30025-RA 762 CG30025-PA 1..759 17..775 2460 88.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
betaTry-RB 1071 CG18211-RB 17..776 16..775 3800 100 Plus
betaTry-RA 813 CG18211-RA 17..776 16..775 3800 100 Plus
CG30025-RA 810 CG30025-RA 14..773 16..775 2465 88.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11346341..11347100 16..775 3800 100 Plus
2R 25286936 2R 11353601..11354360 775..16 2465 88.3 Minus
2R 25286936 2R 11349097..11349856 775..16 2405 87.8 Minus
2R 25286936 2R 11350826..11351585 16..775 2405 87.8 Plus
2R 25286936 2R 11355332..11356091 16..775 2405 87.8 Plus
2R 25286936 2R 11344346..11345093 763..16 2390 88 Minus
2R 25286936 2R 11345694..11346014 370..50 285 72.6 Minus
2R 25286936 2R 11345320..11345489 744..575 280 77.6 Minus
Blast to na_te.dros performed on 2014-11-27 15:39:30 has no hits.

BO17983.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:07 Download gff for BO17983.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..762 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:33 Download gff for BO17983.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..767 15..783 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:54 Download gff for BO17983.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 8..766 17..777 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:07 Download gff for BO17983.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 1..767 15..783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:08 Download gff for BO17983.complete
Subject Subject Range Query Range Percent Splice Strand
betaTry-RA 18..776 17..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:08 Download gff for BO17983.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11346342..11347100 17..777 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:54 Download gff for BO17983.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7233847..7234605 17..777 99   Plus

BO17983.pep Sequence

Translation from 16 to 793

> BO17983.pep
MLKFLILLSAVACALGGTIPEGLLPQLDGRIVGGTATTISSFPWQISLQR
SGSHSCGGSIYSARVIVTAAHCLQSVSASSLQIRAGSSYWSSGGVVAKVS
SFKNHEGYNANTMVNDIAVLHLSSSLSFSSTIKAIGLASSNPANGAAASV
SGWGTESSGSSSIPSQLRYVNVNIVSQSRCSSSSYGYGNQIKSSMICAFA
SGKDSCQGDSGGPLVSGGVLVGVVSWGYGCAAANYPGVYADVAALRSWVI
NNAASFLDH

BO17983.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
betaTry-PB 253 CG18211-PB 1..253 1..253 1286 100 Plus
betaTry-PA 253 CG18211-PA 1..253 1..253 1286 100 Plus
CG30025-PA 253 CG30025-PA 1..253 1..253 1163 88.1 Plus
gammaTry-PA 253 CG30028-PA 1..253 1..253 1158 87.7 Plus
deltaTry-PA 253 CG12351-PA 1..253 1..253 1158 87.7 Plus