Clone Sequence Records
BO17983.3prime Sequence
791 bp (693 high quality bases) assembled on 2006-10-13
> BO17983.3prime
ATGGTCTAGAAAGCTTGCGGCGTTGTTGATCACCCAGGAGCGGAGGGCAG
CAACATCGGCATAGACACCGGGGTAGTTAGCGGCAGCACATCCGTATCCC
CAGGAGACAACACCGACGAGGACTCCGCCGGAGACCAGTGGGCCACCGGA
GTCACCCTGGCACGAGTCCTTGCCGCTGGCAAAAGCGCAGATCATGGAGC
TCTTGATCTGGTTTCCGTAGCCATAGGAGGAAGAAGAGCACCGGCTCTGG
CTGACGATGTTCACGTTGACATAACGCAGCTGGGAGGGAATGGAGCTGGA
GCCAGAGGACTCGGTACCCCATCCGGAGACGGAGGCAGCAGCACCGTTGG
CGGGGTTGGAGCTAGCCAGACCGATGGCCTTGATGGTGGAGCTGAAGCTC
AGAGAGGAGCTCAGATGGAGCACAGCGATGTCGTTGACCATGGTGTTGGC
GTTGTAACCCTCGTGGTTCTTGAAAGAGGAAACCTTGGCGACGACGCCAC
CAGAGCTCCAGTAGCTGGATCCGGCGCGGATCTGCAGGGAGGAGGCGGAC
ACGGACTGCAGGCAGTGAGCGGCGGTCACGATCACCCTGGCGGAGTAGAT
GGATCCACCGCAGGAGTGGCTGCCACTGCGCTGCAGGGAGATCTGCCAGG
GGAAGCTGCTGATGGTGGTAGCAGTACCGCCGACAATGCGGCCATCCAAC
TGGGGCAGGAGACCCTCGGGGATGGTGCCTCCCAGGGCGCAGGCTACAGC
CGACAACAGGATCAGGAACTTCAGCATGTCGACTGATAACT
BO17983.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18211-PA | 762 | betaTry-RA | 1..759 | 777..19 | 3795 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 1..186 | 777..592 | 655 | 94 | Minus |
CG12351-PA | 762 | deltaTry-RA | 1..186 | 777..592 | 655 | 94 | Minus |
CG30031-PA | 762 | CG30031-RA | 1..186 | 777..592 | 655 | 94 | Minus |
CG30028-PA | 762 | gammaTry-RA | 1..186 | 777..592 | 655 | 94 | Minus |
CG18444-PA | 771 | alphaTry-RA | 36..185 | 742..593 | 600 | 96 | Minus |
CG18444-PA | 771 | alphaTry-RA | 240..401 | 538..377 | 485 | 91.9 | Minus |
CG30025-PA | 762 | CG30025-RA | 616..689 | 162..89 | 370 | 100 | Minus |
CG12351-PA | 762 | deltaTry-RA | 616..689 | 162..89 | 370 | 100 | Minus |
CG30031-PA | 762 | CG30031-RA | 616..689 | 162..89 | 370 | 100 | Minus |
CG30028-PA | 762 | gammaTry-RA | 616..689 | 162..89 | 370 | 100 | Minus |
CG18444-PA | 771 | alphaTry-RA | 616..689 | 162..89 | 370 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 381..461 | 397..317 | 355 | 97.5 | Minus |
CG12351-PA | 762 | deltaTry-RA | 381..461 | 397..317 | 355 | 97.5 | Minus |
CG30031-PA | 762 | CG30031-RA | 381..461 | 397..317 | 355 | 97.5 | Minus |
CG30028-PA | 762 | gammaTry-RA | 381..461 | 397..317 | 355 | 97.5 | Minus |
CG30025-PA | 762 | CG30025-RA | 700..759 | 78..19 | 300 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 196..275 | 582..503 | 250 | 92.5 | Minus |
CG12351-PA | 762 | deltaTry-RA | 196..275 | 582..503 | 250 | 92.5 | Minus |
CG30031-PA | 762 | CG30031-RA | 196..275 | 582..503 | 250 | 92.5 | Minus |
CG30028-PA | 762 | gammaTry-RA | 196..275 | 582..503 | 250 | 92.5 | Minus |
CG12351-PA | 762 | deltaTry-RA | 700..746 | 78..32 | 235 | 100 | Minus |
CG30031-PA | 762 | CG30031-RA | 700..746 | 78..32 | 235 | 100 | Minus |
CG30028-PA | 762 | gammaTry-RA | 700..746 | 78..32 | 235 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 298..350 | 480..428 | 215 | 96.2 | Minus |
CG12351-PA | 762 | deltaTry-RA | 298..350 | 480..428 | 215 | 96.2 | Minus |
CG30031-PA | 762 | CG30031-RA | 298..350 | 480..428 | 215 | 96.2 | Minus |
CG30028-PA | 762 | gammaTry-RA | 298..350 | 480..428 | 215 | 96.2 | Minus |
CG18444-PA | 771 | alphaTry-RA | 700..747 | 78..31 | 190 | 95.8 | Minus |
CG18444-PA | 771 | alphaTry-RA | 199..233 | 579..545 | 150 | 97.1 | Minus |
CG18681-PA | 771 | epsilonTry-RA | 616..650 | 162..128 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTry-RB | 1071 | CG18211-RB | 17..776 | 778..19 | 3800 | 100 | Minus |
betaTry-RA | 813 | CG18211-RA | 17..776 | 778..19 | 3800 | 100 | Minus |
CG30025-RA | 810 | CG30025-RA | 14..773 | 778..19 | 2465 | 88.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11346341..11347100 | 778..19 | 3800 | 100 | Minus |
2R | 25286936 | 2R | 11353601..11354360 | 19..778 | 2465 | 88.3 | Plus |
2R | 25286936 | 2R | 11349097..11349856 | 19..778 | 2405 | 87.8 | Plus |
2R | 25286936 | 2R | 11350826..11351585 | 778..19 | 2405 | 87.8 | Minus |
2R | 25286936 | 2R | 11355332..11356091 | 778..19 | 2405 | 87.8 | Minus |
2R | 25286936 | 2R | 11344346..11345093 | 31..778 | 2390 | 88 | Plus |
2R | 25286936 | 2R | 11345694..11346014 | 424..744 | 285 | 72.6 | Plus |
2R | 25286936 | 2R | 11345320..11345489 | 50..219 | 280 | 77.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:03:58 has no hits.
BO17983.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:22 Download gff for
BO17983.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18211-PA | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:42 Download gff for
BO17983.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 1..771 | 11..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:06 Download gff for
BO17983.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 7..781 | 11..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:06 Download gff for
BO17983.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11346331..11347105 | 11..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:42 Download gff for
BO17983.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7233836..7234610 | 11..786 | 99 | | Minus |
BO17983.5prime Sequence
791 bp (757 high quality bases) assembled on 2006-10-13
> BO17983.5prime
GAAGTTATCAGTCGACATGCTGAAGTTCCTGATCCTGTTGTCGGCTGTAG
CCTGCGCCCTGGGAGGCACCATCCCCGAGGGTCTCCTGCCCCAGTTGGAT
GGCCGCATTGTCGGCGGTACTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CCGCCAGGGTGATCGTGACCGCCGCTCACTGCCTGCAGTCCGTGTCCGCC
TCCTCCCTGCAGATCCGCGCCGGATCCAGCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGTTACAACGCCAACA
CCATGGTCAACGACATCGCTGTGCTCCATCTGAGCTCCTCTCTGAGCTTC
AGCTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGG
TGCTGCTGCCTCCGTCTCCGGATGGGGTACCGAGTCCTCTGGCTCCAGCT
CCATTCCCTCCCAGCTGCGTTATGTCAACGTGAACATCGTCAGCCAGAGC
CGGTGCTCTTCTTCCTCCTATGGCTACGGAAACCAGATCAAGAGCTCCAT
GATCTGCGCTTTTGCCAGCGGCAAGGACTCGTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGTGCTGCCGCTAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCT
CCGCTCCTGGGTGATCAACAACGCCGCAAGCTTTCTAGACC
BO17983.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18211-PA | 762 | betaTry-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
CG30025-PA | 762 | CG30025-RA | 1..186 | 17..202 | 655 | 94 | Plus |
CG12351-PA | 762 | deltaTry-RA | 1..186 | 17..202 | 655 | 94 | Plus |
CG30031-PA | 762 | CG30031-RA | 1..186 | 17..202 | 655 | 94 | Plus |
CG30028-PA | 762 | gammaTry-RA | 1..186 | 17..202 | 655 | 94 | Plus |
CG18444-PA | 771 | alphaTry-RA | 36..185 | 52..201 | 600 | 96 | Plus |
CG18444-PA | 771 | alphaTry-RA | 240..401 | 256..417 | 485 | 91.9 | Plus |
CG30025-PA | 762 | CG30025-RA | 616..689 | 632..705 | 370 | 100 | Plus |
CG12351-PA | 762 | deltaTry-RA | 616..689 | 632..705 | 370 | 100 | Plus |
CG30031-PA | 762 | CG30031-RA | 616..689 | 632..705 | 370 | 100 | Plus |
CG30028-PA | 762 | gammaTry-RA | 616..689 | 632..705 | 370 | 100 | Plus |
CG18444-PA | 771 | alphaTry-RA | 616..689 | 632..705 | 370 | 100 | Plus |
CG30025-PA | 762 | CG30025-RA | 381..461 | 397..477 | 355 | 97.5 | Plus |
CG12351-PA | 762 | deltaTry-RA | 381..461 | 397..477 | 355 | 97.5 | Plus |
CG30031-PA | 762 | CG30031-RA | 381..461 | 397..477 | 355 | 97.5 | Plus |
CG30028-PA | 762 | gammaTry-RA | 381..461 | 397..477 | 355 | 97.5 | Plus |
CG30025-PA | 762 | CG30025-RA | 700..759 | 716..775 | 300 | 100 | Plus |
CG30025-PA | 762 | CG30025-RA | 196..275 | 212..291 | 250 | 92.5 | Plus |
CG12351-PA | 762 | deltaTry-RA | 196..275 | 212..291 | 250 | 92.5 | Plus |
CG30031-PA | 762 | CG30031-RA | 196..275 | 212..291 | 250 | 92.5 | Plus |
CG30028-PA | 762 | gammaTry-RA | 196..275 | 212..291 | 250 | 92.5 | Plus |
CG12351-PA | 762 | deltaTry-RA | 700..746 | 716..762 | 235 | 100 | Plus |
CG30031-PA | 762 | CG30031-RA | 700..746 | 716..762 | 235 | 100 | Plus |
CG30028-PA | 762 | gammaTry-RA | 700..746 | 716..762 | 235 | 100 | Plus |
CG30025-PA | 762 | CG30025-RA | 298..350 | 314..366 | 215 | 96.2 | Plus |
CG12351-PA | 762 | deltaTry-RA | 298..350 | 314..366 | 215 | 96.2 | Plus |
CG30031-PA | 762 | CG30031-RA | 298..350 | 314..366 | 215 | 96.2 | Plus |
CG30028-PA | 762 | gammaTry-RA | 298..350 | 314..366 | 215 | 96.2 | Plus |
CG18444-PA | 771 | alphaTry-RA | 700..747 | 716..763 | 190 | 95.8 | Plus |
CG18444-PA | 771 | alphaTry-RA | 199..233 | 215..249 | 150 | 97.1 | Plus |
CG18681-PA | 771 | epsilonTry-RA | 616..650 | 632..666 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTry-RB | 1071 | CG18211-RB | 17..776 | 16..775 | 3800 | 100 | Plus |
betaTry-RA | 813 | CG18211-RA | 17..776 | 16..775 | 3800 | 100 | Plus |
CG30025-RA | 810 | CG30025-RA | 14..773 | 16..775 | 2465 | 88.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11346341..11347100 | 16..775 | 3800 | 100 | Plus |
2R | 25286936 | 2R | 11353601..11354360 | 775..16 | 2465 | 88.3 | Minus |
2R | 25286936 | 2R | 11349097..11349856 | 775..16 | 2405 | 87.8 | Minus |
2R | 25286936 | 2R | 11350826..11351585 | 16..775 | 2405 | 87.8 | Plus |
2R | 25286936 | 2R | 11355332..11356091 | 16..775 | 2405 | 87.8 | Plus |
2R | 25286936 | 2R | 11344346..11345093 | 763..16 | 2390 | 88 | Minus |
2R | 25286936 | 2R | 11345694..11346014 | 370..50 | 285 | 72.6 | Minus |
2R | 25286936 | 2R | 11345320..11345489 | 744..575 | 280 | 77.6 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:39:45 has no hits.
BO17983.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:24 Download gff for
BO17983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18211-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:45 Download gff for
BO17983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 1..771 | 12..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:57 Download gff for
BO17983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 7..781 | 8..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:57 Download gff for
BO17983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11346331..11347105 | 8..783 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:45 Download gff for
BO17983.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7233836..7234610 | 8..783 | 99 | | Plus |
BO17983.complete Sequence
793 bp assembled on 2006-10-11
GenBank Submission: FJ634272
> BO17983.complete
GAAGTTATCAGTCGACATGCTGAAGTTCCTGATCCTGTTGTCGGCTGTAG
CCTGCGCCCTGGGAGGCACCATCCCCGAGGGTCTCCTGCCCCAGTTGGAT
GGCCGCATTGTCGGCGGTACTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACT
CCGCCAGGGTGATCGTGACCGCCGCTCACTGCCTGCAGTCCGTGTCCGCC
TCCTCCCTGCAGATCCGCGCCGGATCCAGCTACTGGAGCTCTGGTGGCGT
CGTCGCCAAGGTTTCCTCTTTCAAGAACCACGAGGGTTACAACGCCAACA
CCATGGTCAACGACATCGCTGTGCTCCATCTGAGCTCCTCTCTGAGCTTC
AGCTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGG
TGCTGCTGCCTCCGTCTCCGGATGGGGTACCGAGTCCTCTGGCTCCAGCT
CCATTCCCTCCCAGCTGCGTTATGTCAACGTGAACATCGTCAGCCAGAGC
CGGTGCTCTTCTTCCTCCTATGGCTACGGAAACCAGATCAAGAGCTCCAT
GATCTGCGCTTTTGCCAGCGGCAAGGACTCGTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGTGCTGCCGCTAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCT
CCGCTCCTGGGTGATCAACAACGCCGCAAGCTTTCTAGACCAT
BO17983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTry-RB | 762 | CG18211-PB | 1..759 | 17..775 | 3795 | 100 | Plus |
betaTry-RA | 762 | CG18211-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
CG30025-RA | 762 | CG30025-PA | 1..759 | 17..775 | 2460 | 88.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTry-RB | 1071 | CG18211-RB | 17..776 | 16..775 | 3800 | 100 | Plus |
betaTry-RA | 813 | CG18211-RA | 17..776 | 16..775 | 3800 | 100 | Plus |
CG30025-RA | 810 | CG30025-RA | 14..773 | 16..775 | 2465 | 88.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11346341..11347100 | 16..775 | 3800 | 100 | Plus |
2R | 25286936 | 2R | 11353601..11354360 | 775..16 | 2465 | 88.3 | Minus |
2R | 25286936 | 2R | 11349097..11349856 | 775..16 | 2405 | 87.8 | Minus |
2R | 25286936 | 2R | 11350826..11351585 | 16..775 | 2405 | 87.8 | Plus |
2R | 25286936 | 2R | 11355332..11356091 | 16..775 | 2405 | 87.8 | Plus |
2R | 25286936 | 2R | 11344346..11345093 | 763..16 | 2390 | 88 | Minus |
2R | 25286936 | 2R | 11345694..11346014 | 370..50 | 285 | 72.6 | Minus |
2R | 25286936 | 2R | 11345320..11345489 | 744..575 | 280 | 77.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:39:30 has no hits.
BO17983.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:07 Download gff for
BO17983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:33 Download gff for
BO17983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 1..767 | 15..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:54 Download gff for
BO17983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 8..766 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:07 Download gff for
BO17983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 1..767 | 15..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:08 Download gff for
BO17983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
betaTry-RA | 18..776 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:08 Download gff for
BO17983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11346342..11347100 | 17..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:54 Download gff for
BO17983.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7233847..7234605 | 17..777 | 99 | | Plus |
BO17983.pep Sequence
Translation from 16 to 793
> BO17983.pep
MLKFLILLSAVACALGGTIPEGLLPQLDGRIVGGTATTISSFPWQISLQR
SGSHSCGGSIYSARVIVTAAHCLQSVSASSLQIRAGSSYWSSGGVVAKVS
SFKNHEGYNANTMVNDIAVLHLSSSLSFSSTIKAIGLASSNPANGAAASV
SGWGTESSGSSSIPSQLRYVNVNIVSQSRCSSSSYGYGNQIKSSMICAFA
SGKDSCQGDSGGPLVSGGVLVGVVSWGYGCAAANYPGVYADVAALRSWVI
NNAASFLDH
BO17983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
betaTry-PB | 253 | CG18211-PB | 1..253 | 1..253 | 1286 | 100 | Plus |
betaTry-PA | 253 | CG18211-PA | 1..253 | 1..253 | 1286 | 100 | Plus |
CG30025-PA | 253 | CG30025-PA | 1..253 | 1..253 | 1163 | 88.1 | Plus |
gammaTry-PA | 253 | CG30028-PA | 1..253 | 1..253 | 1158 | 87.7 | Plus |
deltaTry-PA | 253 | CG12351-PA | 1..253 | 1..253 | 1158 | 87.7 | Plus |