Clone Sequence Records
BO17986.3prime Sequence
534 bp (452 high quality bases) assembled on 2006-10-13
> BO17986.3prime
ATGGTCTAGAAAGCTTGCTTTTTTATTTTTATCCTTGTTCTTATCTTTCT
TCTTATCCGTGCCCTTATCCTTCTTATCCTTTTTCATCTTCTTGATCATG
TCTTTTCTCGCCTTCTTGGCCTTTTTTATGGCACTGGGACAGACGTGGTT
CTCACCATGAATTTTGACCCACTGACGACCCCGCTCCGCTTCGCAGAGGC
TCAGGGGGAATCGGCACTCGCACTCGCGAGGTCGATATGGTCGCTTGGCC
AGCTTAGGCTGCTTACAATCCGACCAGCAGGGCATCGGTGCACACAACCT
GCGGCAGCAGGAGGGCGTCTTGGCCGCGTGGCATCTGGGCGGACGACGTC
CTGGCACGCATCGTGCCAACGGAGCGAAATGGGGACATGGTCCTGTGGCT
GTGGCACTGAGCGTTGTCCGCTCGCGCCGCTCGGCCACCCGACGGGCGGG
GCTCAGAGCCTCCAGCTTGTCGTAGGCGCAGATTTATCTTCTTGCGGATC
ATGAACTTGGGGCACTCCACCCAGTGGCGCTGGT
BO17986.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-PA | 861 | CG11635-RA | 344..858 | 534..19 | 2515 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-RA | 935 | CG11635-RA | 413..927 | 534..19 | 2540 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8358950..8359464 | 534..19 | 2515 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:07:24 has no hits.
BO17986.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:26 Download gff for
BO17986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-PA | 344..861 | 15..534 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:47:50 Download gff for
BO17986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 413..935 | 10..534 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:10 Download gff for
BO17986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 413..935 | 10..534 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:10 Download gff for
BO17986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8358950..8359473 | 7..534 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:47:50 Download gff for
BO17986.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4246455..4246978 | 7..534 | 98 | | Minus |
BO17986.5prime Sequence
755 bp (641 high quality bases) assembled on 2006-10-13
> BO17986.5prime
GAAGTTATCCGTCGACATGTTTTGGTCCTCCCTACTAAGGGGCTTCAGCT
CACGTCAGAGCGGCTCCTCGAATAAACCCCCAAACCCTCCAAGTCCACCG
AAGCCACCATCGTCACCATCTCCACCAAAGTCTCCTTCTGCCAAACGAGA
ATGCAAGATCCGGACGCACTGCATTCCGGCCGCCTTCTGCGCCGAAGGGG
ATAAGTTCAAGTCGATGTGGGATCCGCCGAAGAACCTGCCTCCGCCGTAC
CCCTTCGTGGTCAGCCGATCAAATGACTTGTGCTGCGAACCCAACTGCAC
CAAACCACTGCCCTCATTCGACGAGCTGTATTACCGTCCCTCCTGCAAGA
ACGGTCCTTACCAGCGCCACTGGGTGGAGTGCCCCAAGTTCATGATCCGC
AAGAAGATAATCTGCGCCTACGACAAGCTGGAGGCTCTGAGCCCCGCCCG
TCGGGTGGCCGAGCGGCGCGAGCGGACAACGCTCAGTGCCACAGCCACAG
GACCATGTCCCCATTTCGCTCCGTTGGCACGATGCGTGCCAGGACGTCGT
CCGCCCAGATGCCACGCGGCCAAGACGCCCTCCTGCTGCCGCAGGTTGTG
TGCACCGATGCCCTGCTGGTCGGATTGTAAGCAGCCTAAGCTGGGCAAGC
GACCATATCGACCTCGCGAGTGCGAGTGCCGATTCCCCCTGAGCCTCTGC
GAAGCGGAGCGGGGTCGTCAGTGGGTCAAAATTCATGGTGAGAACCACGT
CTGTC
BO17986.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-PA | 861 | CG11635-RA | 1..739 | 17..755 | 3645 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-RA | 935 | CG11635-RA | 70..808 | 17..755 | 3665 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8358607..8359345 | 17..755 | 3665 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:10:21 has no hits.
BO17986.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:26 Download gff for
BO17986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-PA | 1..739 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:24:21 Download gff for
BO17986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 58..808 | 2..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:50:30 Download gff for
BO17986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 58..808 | 2..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:50:30 Download gff for
BO17986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8358595..8359345 | 2..755 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:24:21 Download gff for
BO17986.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4246100..4246850 | 2..755 | 99 | | Plus |
BO17986.complete Sequence
892 bp assembled on 2008-11-10
GenBank Submission: KX798541
> BO17986.complete
GAAGTTATCAGTCGACATGTTTTGGTCCTCCCTACTAAGGGGCTTCAGCT
CACGTCAGAGCGGCTCCTCGAATAAACCCCCAAAACCTCCAAGTCCACCG
AAGCCACCATCGTCACCATCTCCACCAAAGTCTCCTTCTGCCAAACGAGA
ATGCAAGATCCGGACGCACTGCATTCCGGCCGCCTTCTGCGCCGAAGGGG
ATAAGTTCAAGTCGATGTGGGATCCGCCGAAGAACCTGCCTCCGCCGTAC
CCCTTCGTGGTCAGCCGATCAAATGACTTGTGCTGCGAACCCAACTGCAC
CAAACCACTGCCCTCATTCGACGAGCTGTATTACCGTCCCTCCTGCAAGA
ACGGTCCTTACCAGCGCCACTGGGTGGAGTGCCCCAAGTTCATGATCCGC
AAGAAGATAATCTGCGCCTACGACAAGCTGGAGGCTCTGAGCCCCGCCCG
TCGGGTGGCCGAGCGGCGCGAGCGGACAACGCTCAGTGCCACAGCCACAG
GACCATGTCCCCATTTCGCTCCGTTGGCACGATGCGTGCCAGGACGTCGT
CCGCCCAGATGCCACGCGGCCAAGACGCCCTCCTGCTGCCGCAGGTTGTG
TGCACCGATGCCCTGCTGGTCGGATTGTAAGCAGCCTAAGCTGGCCAAGC
GACCATATCGACCTCGCGAGTGCGAGTGCCGATTCCCCCTGAGCCTCTGC
GAAGCGGAGCGGGGTCGTCAGTGGGTCAAAATTCATGGTGAGAACCACGT
CTGTCCCAGTGCCATAAAAAAGGCCAAGAAGGCGAGAAAAGACATGCTCA
AGAAGATGAAAAAGGATAAGAAGGATAAGGGCACGGATAAGAAGAAAGAT
AAGAACAAGGATAAAAATAAAAAAGCAAGCTTTCTAGACCAT
BO17986.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-RA | 861 | CG11635-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-RA | 935 | CG11635-RA | 70..927 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8358607..8359464 | 17..874 | 4290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:01:19 has no hits.
BO17986.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:04 Download gff for
BO17986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 475..1342 | 8..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:09 Download gff for
BO17986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 77..913 | 24..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:24 Download gff for
BO17986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 489..1325 | 24..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:48 Download gff for
BO17986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11635-RA | 77..913 | 24..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:48 Download gff for
BO17986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8358614..8359450 | 24..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:09 Download gff for
BO17986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4246119..4246955 | 24..860 | 100 | | Plus |
BO17986.pep Sequence
Translation from 16 to 892
> BO17986.pep
MFWSSLLRGFSSRQSGSSNKPPKPPSPPKPPSSPSPPKSPSAKRECKIRT
HCIPAAFCAEGDKFKSMWDPPKNLPPPYPFVVSRSNDLCCEPNCTKPLPS
FDELYYRPSCKNGPYQRHWVECPKFMIRKKIICAYDKLEALSPARRVAER
RERTTLSATATGPCPHFAPLARCVPGRRPPRCHAAKTPSCCRRLCAPMPC
WSDCKQPKLAKRPYRPRECECRFPLSLCEAERGRQWVKIHGENHVCPSAI
KKAKKARKDMLKKMKKDKKDKGTDKKKDKNKDKNKKASFLDH
BO17986.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11635-PA | 286 | CG11635-PA | 1..286 | 1..286 | 1619 | 100 | Plus |
| hubl-PB | 291 | CG30364-PB | 53..279 | 23..244 | 220 | 32.9 | Plus |
| hubl-PA | 291 | CG30364-PA | 53..279 | 23..244 | 220 | 32.9 | Plus |
| swif-PB | 284 | CG30366-PB | 88..279 | 41..235 | 219 | 33.6 | Plus |
| swif-PA | 284 | CG30366-PA | 88..279 | 41..235 | 219 | 33.6 | Plus |
