Clone Sequence Records
BO17991.3prime Sequence
607 bp (593 high quality bases) assembled on 2006-10-13
> BO17991.3prime
ATGGTCTAGAAAGCTTGCTTCGTCCAGGCAGATGGTGCGCAAGATGGCCT
CCACCACGGAGTAGGGATCGCAGTTGGAGCTGGGGCGGCGATCCTCGAAA
TAGCCCTTGCCATCATCATTGACGCCGCGAGGAATGCGTATGCTGCATCC
GCGATTGGCCACGCCGGCACTGAAATCGTTGATGGAGCTCGTCTCGTGCT
TTCCGGTCAGACGACGGGCATTGTCCTGTCCCTGCTTGGGATCGTAGGCG
CGAATGTGCCTCTCGTGGCACTTGGACAGCTTGGCCACCGCCTTCTCAAT
GTCCCGAATGCCGCCATCTTCGCGCATTGCCTTCGTCGACACATTGGTGT
GGGCACCAGCACCGTTCCAATCGCCAGGCATCGGCTTGGGATCCAGAGTG
GACACAATGCCAAACTCCTCGGAGATGCGAGGCGGGAGGAAACGGGCCAT
CCAGAGATCATCACCAATGGAGATGCCCTCGCAGGGTCCCACCTGGAACT
CCCACTGGGCGGGCATCACCTCGGCATTGGTGCCGGACACCTTGATGCCG
GCGTACAGACAGGCGCGATAGTGGGCTTCCACAATGTCGCGGGCGTAGAC
CTTGTTG
BO17991.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1743-PB | 1110 | Gs2-RB | 519..1107 | 607..19 | 2845 | 99.3 | Minus |
| CG1743-PC | 1110 | Gs2-RC | 519..1107 | 607..19 | 2845 | 99.3 | Minus |
| CG1743-PA | 801 | Gs2-RA | 210..798 | 607..19 | 2845 | 99.3 | Minus |
| CG2718-PC | 1200 | Gs1-RC | 683..725 | 536..494 | 165 | 95.3 | Minus |
| CG2718-PB | 1200 | Gs1-RB | 683..725 | 536..494 | 165 | 95.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gs2-RF | 1990 | CG1743-RF | 833..1421 | 607..19 | 2885 | 99.3 | Minus |
| Gs2-RE | 1829 | CG1743-RE | 672..1260 | 607..19 | 2885 | 99.3 | Minus |
| Gs2-RD | 1918 | CG1743-RD | 761..1349 | 607..19 | 2885 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11429239..11429628 | 408..19 | 1950 | 100 | Minus |
| X | 23542271 | X | 11428980..11429173 | 602..409 | 910 | 97.9 | Minus |
| 2L | 23513712 | 2L | 133104..133207 | 597..494 | 205 | 79.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:41:24 has no hits.
BO17991.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:33 Download gff for
BO17991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1743-PA | 210..801 | 18..607 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:56:12 Download gff for
BO17991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RD | 761..1349 | 19..607 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:31:02 Download gff for
BO17991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RD | 761..1349 | 19..607 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:31:02 Download gff for
BO17991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11428975..11429173 | 409..607 | 96 | -> | Minus |
| X | 11429239..11429628 | 19..408 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:56:12 Download gff for
BO17991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11323008..11323206 | 409..607 | 96 | -> | Minus |
| arm_X | 11323272..11323661 | 19..408 | 100 | | Minus |
BO17991.5prime Sequence
595 bp (594 high quality bases) assembled on 2006-10-13
> BO17991.5prime
GAAGTTATCAGTCGACATGCATTCCGCGATCCTGGAGGACTCGCCCAACG
CGCGCATCAACAAGACGATCCTCGATCGCTATCTTTCACTGCCGCTGCAG
GAGAACATCGTTCAGGCCACCTACGTGTGGATCGATGGCACCGGCGAGGA
TTTGCGCTGCAAGGATCGCACCCTCGACTTCATTCCCCAGAGTCCCAAGG
AGCTACCCGTTTGGAACTACGATGGAAGCTCGTGCTACCAGGCCGAGGGA
TCCAACTCGGACACCTACCTGTATCCGGTGGCCATCTACAAGGACCCGTT
CCGGCGCGGCAACAACATCCTGGTGATGTGCGACACCTACAAGTTCGACG
GCACCCCCACGGACACCAACAAGCGCAAGACCTGCCTGGAGGTGGCCAAC
AAGTGCGCCGCAGAGGAGCCCTGGTTCGGTATTGAGCAGGAGTACACCTT
CCTCGACTTTGATGGCCATCCATTGGGCTGGCCCAAGAACGGTTTCCCCG
GACCCCAGGGACCCTACTATTGCGGCGTTGGTGCCAACAAGGTCTACGCC
CGCGACATTGTGGATGCCCACTATCGCGCCTGTCTGTACGCCGGC
BO17991.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1743-PB | 1110 | Gs2-RB | 1..579 | 17..595 | 2895 | 100 | Plus |
| CG1743-PC | 1110 | Gs2-RC | 12..579 | 28..595 | 2840 | 100 | Plus |
| CG1743-PA | 801 | Gs2-RA | 1..270 | 326..595 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gs2-RB | 1906 | CG1743-RB | 231..809 | 17..595 | 2895 | 100 | Plus |
| Gs2-RF | 1990 | CG1743-RF | 326..893 | 28..595 | 2840 | 100 | Plus |
| Gs2-RE | 1829 | CG1743-RE | 165..732 | 28..595 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11428528..11428871 | 200..543 | 1720 | 100 | Plus |
| X | 23542271 | X | 11424282..11424454 | 28..200 | 865 | 100 | Plus |
| X | 23542271 | X | 11428980..11429035 | 540..595 | 280 | 100 | Plus |
| 2L | 23513712 | 2L | 132973..133130 | 414..571 | 250 | 77.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:11:12 has no hits.
BO17991.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:34 Download gff for
BO17991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1743-PB | 1..579 | 17..595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:24:39 Download gff for
BO17991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RB | 224..809 | 9..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:53 Download gff for
BO17991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RB | 224..809 | 9..595 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:53 Download gff for
BO17991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11424282..11424454 | 28..200 | 100 | -> | Plus |
| X | 11428529..11428869 | 201..541 | 100 | -> | Plus |
| X | 11428982..11429035 | 542..595 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:24:39 Download gff for
BO17991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11318315..11318487 | 28..200 | 100 | -> | Plus |
| arm_X | 11322562..11322902 | 201..541 | 100 | -> | Plus |
| arm_X | 11323015..11323068 | 542..595 | 100 | | Plus |
BO17991.complete Sequence
1141 bp assembled on 2007-03-23
GenBank Submission: FJ634273
> BO17991.complete
GAAGTTATCAGTCGACATGCATTCCGCGATCCTGGAGGACTCGCCCAACG
CGCGCATCAACAAGACGATCCTCGATCGCTATCTTTCACTGCCGCTGCAG
GAGAACATCGTTCAGGCCACCTACGTGTGGATCGATGGCACCGGCGAGGA
TTTGCGCTGCAAGGATCGCACCCTCGACTTCATTCCCCAGAGTCCCAAGG
AGCTACCCGTTTGGAACTACGATGGAAGCTCGTGCTACCAGGCCGAGGGA
TCCAACTCGGACACCTACCTGTATCCGGTGGCCATCTACAAGGACCCGTT
CCGGCGCGGCAACAACATCCTGGTGATGTGCGACACCTACAAGTTCGACG
GCACCCCCACGGACACCAACAAGCGCAAGACCTGCCTGGAGGTGGCCAAC
AAGTGCGCCGCAGAGGAGCCCTGGTTCGGTATTGAGCAGGAGTACACCTT
CCTCGACTTTGATGGCCATCCATTGGGCTGGCCCAAGAACGGTTTCCCCG
GACCCCAGGGACCCTACTATTGCGGCGTTGGTGCCAACAAGGTCTACGCC
CGCGACATTGTGGATGCCCACTATCGCGCCTGTCTGTACGCCGGCATCAA
GGTGTCCGGCACCAATGCCGAGGTGATGCCCGCCCAGTGGGAGTTCCAGG
TGGGACCCTGCGAGGGCATCTCCATTGGTGATGATCTCTGGATGGCCCGT
TTCCTCTTGCATCGCATCTCCGAGGAGTTTGGCATTGTGTCCACTCTGGA
TCCCAAGCCGATGCCTGGCGATTGGAACGGTGCTGGTGCCCACACCAATG
TGTCGACGAAGGCAATGCGCGAAGATGGCGGCATTCGGGACATTGAGAAG
GCGGTGGCCAAGCTGTCCAAGTGCCACGAGAGGCACATTCGCGCCTACGA
TCCCAAGCAGGGACAGGACAATGCCCGTCGTCTGACCGGAAAGCACGAGA
CGAGCTCCATCAACGATTTCAGTGCCGGCGTGGCCAATCGCGGATGCAGC
ATACGCATTCCTCGCGGCGTCAATGATGATGGCAAGGGCTATTTCGAGGA
TCGCCGCCCCAGCTCCAACTGCGATCCCTACTCCGTGGTGGAGGCCATCT
TGCGCACCATCTGCCTGGACGAAGCAAGCTTTCTAGACCAT
BO17991.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gs2-RB | 1110 | CG1743-PB | 1..1107 | 17..1123 | 5535 | 100 | Plus |
| Gs2-RF | 1110 | CG1743-PF | 12..1107 | 28..1123 | 5480 | 100 | Plus |
| Gs2-RE | 1110 | CG1743-PE | 12..1107 | 28..1123 | 5480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gs2-RB | 1906 | CG1743-RB | 231..1337 | 17..1123 | 5535 | 100 | Plus |
| Gs2-RF | 1990 | CG1743-RF | 326..1421 | 28..1123 | 5480 | 100 | Plus |
| Gs2-RE | 1829 | CG1743-RE | 165..1260 | 28..1123 | 5480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11429239..11429628 | 734..1123 | 1950 | 100 | Plus |
| X | 23542271 | X | 11428528..11428871 | 200..543 | 1720 | 100 | Plus |
| X | 23542271 | X | 11428980..11429173 | 540..733 | 970 | 100 | Plus |
| X | 23542271 | X | 11424282..11424454 | 28..200 | 865 | 100 | Plus |
| 2L | 23513712 | 2L | 132973..133207 | 414..648 | 380 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:08:56 has no hits.
BO17991.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:50 Download gff for
BO17991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RB | 1..1110 | 17..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:05 Download gff for
BO17991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RB | 201..1314 | 9..1123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:25 Download gff for
BO17991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RB | 231..1337 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:50 Download gff for
BO17991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RB | 201..1314 | 9..1123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:40 Download gff for
BO17991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gs2-RB | 231..1337 | 17..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:40 Download gff for
BO17991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11424282..11424454 | 28..200 | 100 | -> | Plus |
| X | 11428529..11428869 | 201..541 | 100 | -> | Plus |
| X | 11428982..11429173 | 542..733 | 100 | -> | Plus |
| X | 11429239..11429628 | 734..1125 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:25 Download gff for
BO17991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11318315..11318487 | 28..200 | 100 | -> | Plus |
| arm_X | 11322562..11322902 | 201..541 | 100 | -> | Plus |
| arm_X | 11323015..11323206 | 542..733 | 100 | -> | Plus |
| arm_X | 11323272..11323661 | 734..1125 | 99 | | Plus |
BO17991.pep Sequence
Translation from 16 to 1141
> BO17991.pep
MHSAILEDSPNARINKTILDRYLSLPLQENIVQATYVWIDGTGEDLRCKD
RTLDFIPQSPKELPVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRGNN
ILVMCDTYKFDGTPTDTNKRKTCLEVANKCAAEEPWFGIEQEYTFLDFDG
HPLGWPKNGFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTN
AEVMPAQWEFQVGPCEGISIGDDLWMARFLLHRISEEFGIVSTLDPKPMP
GDWNGAGAHTNVSTKAMREDGGIRDIEKAVAKLSKCHERHIRAYDPKQGQ
DNARRLTGKHETSSINDFSAGVANRGCSIRIPRGVNDDGKGYFEDRRPSS
NCDPYSVVEAILRTICLDEASFLDH
BO17991.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gs2-PB | 369 | CG1743-PB | 1..369 | 1..369 | 2021 | 100 | Plus |
| Gs2-PD | 373 | CG1743-PD | 1..373 | 1..369 | 2006 | 98.9 | Plus |
| Gs2-PF | 369 | CG1743-PF | 1..369 | 1..369 | 2004 | 99.2 | Plus |
| Gs2-PE | 369 | CG1743-PE | 1..369 | 1..369 | 2004 | 99.2 | Plus |
| Gs2-PC | 369 | CG1743-PC | 1..369 | 1..369 | 2004 | 99.2 | Plus |
