Clone Sequence Records
BO17992.3prime Sequence
568 bp (567 high quality bases) assembled on 2006-10-13
> BO17992.3prime
ATGGTCTAGAAAGCTTGCCGGATTGAATGTTACTGGCAAGTGGAACCTTT
GCATTAAGGCCCGCATTCGGATGTTGTGTTGACTCGCTGGAAGCAATGAG
GTTTCAACAAGTGGCTGATTGGGCAAGGGCACATGGCCAGGTATTGTGTT
TCCATATGTAATAGCTTGTCTCATAACGTCCTCGTTCAACCGGATGTTCA
ATGGCCGATAAACCGGCGGTGAAGCCTTCTCGACCACGCCCACATTGTAG
TCGATCTTTGTGTTGGCACTCGGAGTTTGCGAATTGGAGGTCTGCGTGCT
CACATGTCCGGTTACAGCATTCTTTGTTGTGTAGTATGTGCTCATTGCTA
TGTTGAGACCAAGTTCGATTGTTTTAGTGTTTGGTGCGTTCGTGTTTGTG
TTGGAGGTTTGCAAGAAAAAAAGAAAAGAAGTAAACACGCGAAGAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNN
BO17992.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12755-PC | 957 | l(3)mbn-RC | 560..954 | 413..19 | 1975 | 100 | Minus |
CG12755-PB | 1962 | l(3)mbn-RB | 560..894 | 413..79 | 1675 | 100 | Minus |
CG12755-PB | 1962 | l(3)mbn-RB | 1022..1081 | 78..19 | 300 | 100 | Minus |
CG12755-PB | 1962 | l(3)mbn-RB | 959..1018 | 78..19 | 300 | 100 | Minus |
CG12755-PB | 1962 | l(3)mbn-RB | 919..955 | 55..19 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)mbn-RB | 2321 | CG12755-RB | 806..1201 | 413..19 | 1725 | 96 | Minus |
l(3)mbn-RE | 2150 | CG12755-RE | 699..1030 | 349..19 | 1405 | 95.2 | Minus |
l(3)mbn-RB | 2321 | CG12755-RB | 1205..1264 | 78..19 | 300 | 100 | Minus |
l(3)mbn-RB | 2321 | CG12755-RB | 1268..1327 | 78..19 | 300 | 100 | Minus |
l(3)mbn-RE | 2150 | CG12755-RE | 1034..1093 | 78..19 | 300 | 100 | Minus |
l(3)mbn-RE | 2150 | CG12755-RE | 1097..1156 | 78..19 | 300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6125325..6125720 | 19..413 | 1690 | 95.7 | Plus |
3L | 28110227 | 3L | 6125199..6125258 | 19..78 | 300 | 100 | Plus |
3L | 28110227 | 3L | 6125262..6125321 | 19..78 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:49:16 has no hits.
BO17992.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:35 Download gff for
BO17992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12755-PC | 560..957 | 18..413 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:14 Download gff for
BO17992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 806..1140 | 79..413 | 100 | -> | Minus |
l(3)mbn-RB | 1205..1268 | 13..78 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:20 Download gff for
BO17992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 806..1140 | 79..413 | 100 | -> | Minus |
l(3)mbn-RB | 1205..1268 | 13..78 | 95 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:20 Download gff for
BO17992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6125258..6125321 | 13..78 | 95 | <- | Plus |
3L | 6125386..6125722 | 79..415 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:14 Download gff for
BO17992.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6118358..6118421 | 13..78 | 95 | <- | Plus |
arm_3L | 6118486..6118822 | 79..415 | 99 | -> | Plus |
BO17992.5prime Sequence
732 bp (663 high quality bases) assembled on 2006-10-13
> BO17992.5prime
GAAGTTATCAGTCGACATGAGCCTAAAATTGATGGCGTTTGTCTGTGCTC
TGCTGCTCCTGTGCACCTTGACCCATGTCCTGTCGGCCGCGACCACAGTG
CGTCCCTACAAGTTCGGCTTCACCATCGACGAGCAGCAGCATCGGGCAGA
GAAGAGAGATGAACGCGGCATTATCATGGGCGAGTTTGGGTTCATCACCG
CCGATGGTATCTATCACGTGACGGTCTATGCCACCGACGAGGAGGGCAAA
TTCCGGATAATCTCCATGAAGAGCTATCCTTACGCGGGTCCAGTTGGTTC
AAAAAGTGTTCCTGTGACAACGACTCCAAAGGTCCTGCTTCCTGCAGCTC
CGGTGGCTCTGCCCAAGTACAACTTCAACTCGGAGGCCTGTTCCGGTTGT
TTCCTAAAAAAGTCCCCTCCCAAGACGGAAATTCGCACACTTTCACAGCC
ATTGGCTCCAGTTCAACCAGGTAAGCCCGATGGCTCTTCAGACATCGGCC
TGAATGTGCAGTTACCCTTCCGGGAATCCATTGCACAGACTGTGGCAAGT
CGTCTTGGTTTGCTCCAAGATACACTGCAAACCTCCAACACAAACACGAA
CGCACCAAACACTAAAACAATCGAACTTGGTCTCAACATAGCAATGAGCA
CATACTACACAACAAAAAATGCTGTAACCGGACATGTGAGCACGCAGACC
TCCAATTCGCAAACTCCGAGTGCCAACACAAG
BO17992.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12755-PB | 1962 | l(3)mbn-RB | 1..715 | 17..731 | 3550 | 99.8 | Plus |
CG12755-PC | 957 | l(3)mbn-RC | 1..715 | 17..731 | 3550 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)mbn-RB | 2321 | CG12755-RB | 247..961 | 17..731 | 3560 | 99.9 | Plus |
l(3)mbn-RD | 1568 | CG12755-RD | 247..702 | 17..472 | 2280 | 100 | Plus |
l(3)mbn-RE | 2150 | CG12755-RE | 247..700 | 17..470 | 2270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6125565..6125993 | 731..303 | 2130 | 99.8 | Minus |
3L | 28110227 | 3L | 6126354..6126499 | 302..157 | 730 | 100 | Minus |
3L | 28110227 | 3L | 6128357..6128469 | 162..50 | 550 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:49:24 has no hits.
BO17992.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:37 Download gff for
BO17992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12755-PC | 1..715 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:16 Download gff for
BO17992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 247..961 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:35 Download gff for
BO17992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 247..961 | 17..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:35 Download gff for
BO17992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6125563..6125993 | 303..732 | 99 | <- | Minus |
3L | 6126354..6126497 | 159..302 | 100 | <- | Minus |
3L | 6128361..6128469 | 50..158 | 100 | <- | Minus |
3L | 6128529..6128561 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:16 Download gff for
BO17992.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6118663..6119093 | 303..732 | 99 | <- | Minus |
arm_3L | 6119454..6119597 | 159..302 | 100 | <- | Minus |
arm_3L | 6121461..6121569 | 50..158 | 100 | <- | Minus |
arm_3L | 6121629..6121661 | 17..49 | 100 | | Minus |
BO17992.complete Sequence
988 bp assembled on 2006-10-11
GenBank Submission: FJ634274
> BO17992.complete
GAAGTTATCAGTCGACATGAGCCTAAAATTGATGGCGTTTGTCTGTGCTC
TGCTGCTCCTGTGCACCTTGACCCATGTCCTGTCGGCCGCGACCACAGTG
CGTCCCTACAAGTTCGGCTTCACCATCGACGAGCAGCAGCATCGGGCAGA
GAAGAGAGATGAACGCGGCATTATCATGGGCGAGTTTGGGTTCATCACCG
CCGATGGTATCTATCACGTGACGGTCTATGCCACCGACGAGGAGGGCAAA
TTCCGGATAATCTCCATGAAGAGCTATCCTTACGCGGGTCCAGTTGGTTC
AAAAAGTGTTCCTGTGACAACGACTCCAAAGGTCCTGCTTCCTGCAGCTC
CGGTGGCTCTGCCCAAGTACAACTTCAACTCGGAGGCCTGTTCCGGTTGT
TTCCTAAAAAAGTCCCCTCCCAAGACGGAAATTCGCACACTTTCACAGCC
ATTGGCTCCAGTTCAACCAGGTAAGCCCGATGGCTCTTCAGACATCGGCC
TGAATGTGCAGTTACCCTTCCGGGAATCCATTGCACAGACTGTGGCAAGT
CGTCTTGGTTTGCTCCAAGATACACTGCAAACCTCCAACACAAACACGAA
CGCACCAAACACTAAAACAATCGAACTTGGTCTCAACATAGCAATGAGCA
CATACTACACAACAAAGAATGCTGTAACCGGACATGTGAGCACGCAGACC
TCCAATTCGCAAACTCCGAGTGCCAACACAAAGATCGACTACAATGTGGG
CGTGGTCGAGAAGGCTTCACCGCCGGTTTATCGGCCATTGAACATCCGGT
TGAACGAGGACGTTATGAGACAAGCTATTACATATGGAAACACAATACCT
GGCCATGTGCCCTTGCCCAATCAGCCACTTGTTGAAACCTCATTGCTTCC
AGCGAGTCAACACAACATCCGAATGCGGGCCTTAATGCAAAGGTTCCACT
TGCCAGTAACATTCAATCCGGCAAGCTTTCTAGACCAT
BO17992.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)mbn-RB | 1962 | CG12755-PB | 1..955 | 17..970 | 4485 | 98.2 | Plus |
l(3)mbn-RD | 1209 | CG12755-PD | 1..456 | 17..472 | 2280 | 100 | Plus |
l(3)mbn-RE | 1791 | CG12755-PE | 1..454 | 17..470 | 2270 | 100 | Plus |
l(3)mbn-RB | 1962 | CG12755-PB | 959..1018 | 911..970 | 300 | 100 | Plus |
l(3)mbn-RB | 1962 | CG12755-PB | 1022..1081 | 911..970 | 300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)mbn-RB | 2321 | CG12755-RB | 247..1201 | 17..970 | 4485 | 98.2 | Plus |
l(3)mbn-RD | 1568 | CG12755-RD | 247..702 | 17..472 | 2280 | 100 | Plus |
l(3)mbn-RE | 2150 | CG12755-RE | 247..700 | 17..470 | 2270 | 100 | Plus |
l(3)mbn-RB | 2321 | CG12755-RB | 1205..1264 | 911..970 | 300 | 100 | Plus |
l(3)mbn-RB | 2321 | CG12755-RB | 1268..1327 | 911..970 | 300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6125325..6125993 | 970..303 | 3055 | 97.5 | Minus |
3L | 28110227 | 3L | 6126354..6126499 | 302..157 | 730 | 100 | Minus |
3L | 28110227 | 3L | 6128357..6128469 | 162..50 | 550 | 99.1 | Minus |
3L | 28110227 | 3L | 6125199..6125258 | 970..911 | 300 | 100 | Minus |
3L | 28110227 | 3L | 6125262..6125321 | 970..911 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:47:27 has no hits.
BO17992.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:08 Download gff for
BO17992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RC | 1..957 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:35 Download gff for
BO17992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RC | 59..1016 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:55 Download gff for
BO17992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 247..1140 | 17..910 | 100 | -> | Plus |
l(3)mbn-RB | 1205..1264 | 911..972 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:08 Download gff for
BO17992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RC | 59..1016 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:03 Download gff for
BO17992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)mbn-RB | 247..1140 | 17..910 | 100 | -> | Plus |
l(3)mbn-RB | 1205..1264 | 911..972 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:03 Download gff for
BO17992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6128361..6128469 | 50..158 | 100 | <- | Minus |
3L | 6128529..6128561 | 17..49 | 100 | | Minus |
3L | 6125258..6125321 | 911..972 | 96 | <- | Minus |
3L | 6125386..6125993 | 303..910 | 100 | <- | Minus |
3L | 6126354..6126497 | 159..302 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:55 Download gff for
BO17992.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6121461..6121569 | 50..158 | 100 | <- | Minus |
arm_3L | 6121629..6121661 | 17..49 | 100 | | Minus |
arm_3L | 6118358..6118421 | 911..972 | 96 | <- | Minus |
arm_3L | 6118486..6119093 | 303..910 | 100 | <- | Minus |
arm_3L | 6119454..6119597 | 159..302 | 100 | <- | Minus |
BO17992.pep Sequence
Translation from 16 to 988
> BO17992.pep
MSLKLMAFVCALLLLCTLTHVLSAATTVRPYKFGFTIDEQQHRAEKRDER
GIIMGEFGFITADGIYHVTVYATDEEGKFRIISMKSYPYAGPVGSKSVPV
TTTPKVLLPAAPVALPKYNFNSEACSGCFLKKSPPKTEIRTLSQPLAPVQ
PGKPDGSSDIGLNVQLPFRESIAQTVASRLGLLQDTLQTSNTNTNAPNTK
TIELGLNIAMSTYYTTKNAVTGHVSTQTSNSQTPSANTKIDYNVGVVEKA
SPPVYRPLNIRLNEDVMRQAITYGNTIPGHVPLPNQPLVETSLLPASQHN
IRMRALMQRFHLPVTFNPASFLDH
BO17992.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)mbn-PB | 653 | CG12755-PB | 1..322 | 1..324 | 1543 | 93.8 | Plus |
l(3)mbn-PE | 596 | CG12755-PE | 1..265 | 1..324 | 1074 | 70.4 | Plus |
l(3)mbn-PD | 402 | CG12755-PD | 1..167 | 1..167 | 796 | 92.2 | Plus |