Clone BO17992 Report

Search the DGRC for BO17992

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:179
Well:92
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)mbn-RC
Protein status:BO17992.pep: validated full length
Sequenced Size:988

Clone Sequence Records

BO17992.3prime Sequence

568 bp (567 high quality bases) assembled on 2006-10-13

> BO17992.3prime
ATGGTCTAGAAAGCTTGCCGGATTGAATGTTACTGGCAAGTGGAACCTTT
GCATTAAGGCCCGCATTCGGATGTTGTGTTGACTCGCTGGAAGCAATGAG
GTTTCAACAAGTGGCTGATTGGGCAAGGGCACATGGCCAGGTATTGTGTT
TCCATATGTAATAGCTTGTCTCATAACGTCCTCGTTCAACCGGATGTTCA
ATGGCCGATAAACCGGCGGTGAAGCCTTCTCGACCACGCCCACATTGTAG
TCGATCTTTGTGTTGGCACTCGGAGTTTGCGAATTGGAGGTCTGCGTGCT
CACATGTCCGGTTACAGCATTCTTTGTTGTGTAGTATGTGCTCATTGCTA
TGTTGAGACCAAGTTCGATTGTTTTAGTGTTTGGTGCGTTCGTGTTTGTG
TTGGAGGTTTGCAAGAAAAAAAGAAAAGAAGTAAACACGCGAAGAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNN

BO17992.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12755-PC 957 l(3)mbn-RC 560..954 413..19 1975 100 Minus
CG12755-PB 1962 l(3)mbn-RB 560..894 413..79 1675 100 Minus
CG12755-PB 1962 l(3)mbn-RB 1022..1081 78..19 300 100 Minus
CG12755-PB 1962 l(3)mbn-RB 959..1018 78..19 300 100 Minus
CG12755-PB 1962 l(3)mbn-RB 919..955 55..19 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-RB 2321 CG12755-RB 806..1201 413..19 1725 96 Minus
l(3)mbn-RE 2150 CG12755-RE 699..1030 349..19 1405 95.2 Minus
l(3)mbn-RB 2321 CG12755-RB 1205..1264 78..19 300 100 Minus
l(3)mbn-RB 2321 CG12755-RB 1268..1327 78..19 300 100 Minus
l(3)mbn-RE 2150 CG12755-RE 1034..1093 78..19 300 100 Minus
l(3)mbn-RE 2150 CG12755-RE 1097..1156 78..19 300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6125325..6125720 19..413 1690 95.7 Plus
3L 28110227 3L 6125199..6125258 19..78 300 100 Plus
3L 28110227 3L 6125262..6125321 19..78 300 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:49:16 has no hits.

BO17992.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:35 Download gff for BO17992.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12755-PC 560..957 18..413 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:14 Download gff for BO17992.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 806..1140 79..413 100 -> Minus
l(3)mbn-RB 1205..1268 13..78 95   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:20 Download gff for BO17992.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 806..1140 79..413 100 -> Minus
l(3)mbn-RB 1205..1268 13..78 95   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:20 Download gff for BO17992.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6125258..6125321 13..78 95 <- Plus
3L 6125386..6125722 79..415 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:14 Download gff for BO17992.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6118358..6118421 13..78 95 <- Plus
arm_3L 6118486..6118822 79..415 99 -> Plus

BO17992.5prime Sequence

732 bp (663 high quality bases) assembled on 2006-10-13

> BO17992.5prime
GAAGTTATCAGTCGACATGAGCCTAAAATTGATGGCGTTTGTCTGTGCTC
TGCTGCTCCTGTGCACCTTGACCCATGTCCTGTCGGCCGCGACCACAGTG
CGTCCCTACAAGTTCGGCTTCACCATCGACGAGCAGCAGCATCGGGCAGA
GAAGAGAGATGAACGCGGCATTATCATGGGCGAGTTTGGGTTCATCACCG
CCGATGGTATCTATCACGTGACGGTCTATGCCACCGACGAGGAGGGCAAA
TTCCGGATAATCTCCATGAAGAGCTATCCTTACGCGGGTCCAGTTGGTTC
AAAAAGTGTTCCTGTGACAACGACTCCAAAGGTCCTGCTTCCTGCAGCTC
CGGTGGCTCTGCCCAAGTACAACTTCAACTCGGAGGCCTGTTCCGGTTGT
TTCCTAAAAAAGTCCCCTCCCAAGACGGAAATTCGCACACTTTCACAGCC
ATTGGCTCCAGTTCAACCAGGTAAGCCCGATGGCTCTTCAGACATCGGCC
TGAATGTGCAGTTACCCTTCCGGGAATCCATTGCACAGACTGTGGCAAGT
CGTCTTGGTTTGCTCCAAGATACACTGCAAACCTCCAACACAAACACGAA
CGCACCAAACACTAAAACAATCGAACTTGGTCTCAACATAGCAATGAGCA
CATACTACACAACAAAAAATGCTGTAACCGGACATGTGAGCACGCAGACC
TCCAATTCGCAAACTCCGAGTGCCAACACAAG

BO17992.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12755-PB 1962 l(3)mbn-RB 1..715 17..731 3550 99.8 Plus
CG12755-PC 957 l(3)mbn-RC 1..715 17..731 3550 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-RB 2321 CG12755-RB 247..961 17..731 3560 99.9 Plus
l(3)mbn-RD 1568 CG12755-RD 247..702 17..472 2280 100 Plus
l(3)mbn-RE 2150 CG12755-RE 247..700 17..470 2270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6125565..6125993 731..303 2130 99.8 Minus
3L 28110227 3L 6126354..6126499 302..157 730 100 Minus
3L 28110227 3L 6128357..6128469 162..50 550 99.1 Minus
Blast to na_te.dros performed on 2015-02-12 03:49:24 has no hits.

BO17992.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:37 Download gff for BO17992.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12755-PC 1..715 17..732 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:16 Download gff for BO17992.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 247..961 17..732 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:35 Download gff for BO17992.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 247..961 17..732 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:35 Download gff for BO17992.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6125563..6125993 303..732 99 <- Minus
3L 6126354..6126497 159..302 100 <- Minus
3L 6128361..6128469 50..158 100 <- Minus
3L 6128529..6128561 17..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:16 Download gff for BO17992.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6118663..6119093 303..732 99 <- Minus
arm_3L 6119454..6119597 159..302 100 <- Minus
arm_3L 6121461..6121569 50..158 100 <- Minus
arm_3L 6121629..6121661 17..49 100   Minus

BO17992.complete Sequence

988 bp assembled on 2006-10-11

GenBank Submission: FJ634274

> BO17992.complete
GAAGTTATCAGTCGACATGAGCCTAAAATTGATGGCGTTTGTCTGTGCTC
TGCTGCTCCTGTGCACCTTGACCCATGTCCTGTCGGCCGCGACCACAGTG
CGTCCCTACAAGTTCGGCTTCACCATCGACGAGCAGCAGCATCGGGCAGA
GAAGAGAGATGAACGCGGCATTATCATGGGCGAGTTTGGGTTCATCACCG
CCGATGGTATCTATCACGTGACGGTCTATGCCACCGACGAGGAGGGCAAA
TTCCGGATAATCTCCATGAAGAGCTATCCTTACGCGGGTCCAGTTGGTTC
AAAAAGTGTTCCTGTGACAACGACTCCAAAGGTCCTGCTTCCTGCAGCTC
CGGTGGCTCTGCCCAAGTACAACTTCAACTCGGAGGCCTGTTCCGGTTGT
TTCCTAAAAAAGTCCCCTCCCAAGACGGAAATTCGCACACTTTCACAGCC
ATTGGCTCCAGTTCAACCAGGTAAGCCCGATGGCTCTTCAGACATCGGCC
TGAATGTGCAGTTACCCTTCCGGGAATCCATTGCACAGACTGTGGCAAGT
CGTCTTGGTTTGCTCCAAGATACACTGCAAACCTCCAACACAAACACGAA
CGCACCAAACACTAAAACAATCGAACTTGGTCTCAACATAGCAATGAGCA
CATACTACACAACAAAGAATGCTGTAACCGGACATGTGAGCACGCAGACC
TCCAATTCGCAAACTCCGAGTGCCAACACAAAGATCGACTACAATGTGGG
CGTGGTCGAGAAGGCTTCACCGCCGGTTTATCGGCCATTGAACATCCGGT
TGAACGAGGACGTTATGAGACAAGCTATTACATATGGAAACACAATACCT
GGCCATGTGCCCTTGCCCAATCAGCCACTTGTTGAAACCTCATTGCTTCC
AGCGAGTCAACACAACATCCGAATGCGGGCCTTAATGCAAAGGTTCCACT
TGCCAGTAACATTCAATCCGGCAAGCTTTCTAGACCAT

BO17992.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-RB 1962 CG12755-PB 1..955 17..970 4485 98.2 Plus
l(3)mbn-RD 1209 CG12755-PD 1..456 17..472 2280 100 Plus
l(3)mbn-RE 1791 CG12755-PE 1..454 17..470 2270 100 Plus
l(3)mbn-RB 1962 CG12755-PB 959..1018 911..970 300 100 Plus
l(3)mbn-RB 1962 CG12755-PB 1022..1081 911..970 300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-RB 2321 CG12755-RB 247..1201 17..970 4485 98.2 Plus
l(3)mbn-RD 1568 CG12755-RD 247..702 17..472 2280 100 Plus
l(3)mbn-RE 2150 CG12755-RE 247..700 17..470 2270 100 Plus
l(3)mbn-RB 2321 CG12755-RB 1205..1264 911..970 300 100 Plus
l(3)mbn-RB 2321 CG12755-RB 1268..1327 911..970 300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6125325..6125993 970..303 3055 97.5 Minus
3L 28110227 3L 6126354..6126499 302..157 730 100 Minus
3L 28110227 3L 6128357..6128469 162..50 550 99.1 Minus
3L 28110227 3L 6125199..6125258 970..911 300 100 Minus
3L 28110227 3L 6125262..6125321 970..911 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:47:27 has no hits.

BO17992.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:08 Download gff for BO17992.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RC 1..957 17..971 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:35 Download gff for BO17992.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RC 59..1016 17..976 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:55 Download gff for BO17992.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 247..1140 17..910 100 -> Plus
l(3)mbn-RB 1205..1264 911..972 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:08 Download gff for BO17992.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RC 59..1016 17..976 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:03 Download gff for BO17992.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)mbn-RB 247..1140 17..910 100 -> Plus
l(3)mbn-RB 1205..1264 911..972 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:03 Download gff for BO17992.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6128361..6128469 50..158 100 <- Minus
3L 6128529..6128561 17..49 100   Minus
3L 6125258..6125321 911..972 96 <- Minus
3L 6125386..6125993 303..910 100 <- Minus
3L 6126354..6126497 159..302 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:55 Download gff for BO17992.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6121461..6121569 50..158 100 <- Minus
arm_3L 6121629..6121661 17..49 100   Minus
arm_3L 6118358..6118421 911..972 96 <- Minus
arm_3L 6118486..6119093 303..910 100 <- Minus
arm_3L 6119454..6119597 159..302 100 <- Minus

BO17992.pep Sequence

Translation from 16 to 988

> BO17992.pep
MSLKLMAFVCALLLLCTLTHVLSAATTVRPYKFGFTIDEQQHRAEKRDER
GIIMGEFGFITADGIYHVTVYATDEEGKFRIISMKSYPYAGPVGSKSVPV
TTTPKVLLPAAPVALPKYNFNSEACSGCFLKKSPPKTEIRTLSQPLAPVQ
PGKPDGSSDIGLNVQLPFRESIAQTVASRLGLLQDTLQTSNTNTNAPNTK
TIELGLNIAMSTYYTTKNAVTGHVSTQTSNSQTPSANTKIDYNVGVVEKA
SPPVYRPLNIRLNEDVMRQAITYGNTIPGHVPLPNQPLVETSLLPASQHN
IRMRALMQRFHLPVTFNPASFLDH

BO17992.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)mbn-PB 653 CG12755-PB 1..322 1..324 1543 93.8 Plus
l(3)mbn-PE 596 CG12755-PE 1..265 1..324 1074 70.4 Plus
l(3)mbn-PD 402 CG12755-PD 1..167 1..167 796 92.2 Plus