Clone BO18001 Report

Search the DGRC for BO18001

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCp1-RA
Protein status:BO18001.pep: validated not full length
Sequenced Size:1057

Clone Sequence Records

BO18001.3prime Sequence

830 bp (810 high quality bases) assembled on 2006-10-13

> BO18001.3prime
ATGGTCTAGAAAGCTTGCGACCAGGGGATAGCTGGAGGCGCTAGCGATGC
CGCACTGGTTCTCCTTGTTGCGCAGCATCTTGATGAAGCCCTTGTCGCCC
CAGGTGGTGCCCCACGAGTTCTTCACCAGCCAGTAATCCTCGCCGGACTC
GTCGGTGCCGAAGCCAACGACCAGCACACCGTGATCCAGATTCTGGGCAT
CACACTGCGGCTCGTTGTAGACGCCCTCCGAGTAGAACTGGAACGACTCG
TGGGAGGCATCGATGGCGACGGAAACGGGACCAACGGTGGCCACAGCCTC
GGCCATCTTCTTCTCATCACCCTGGGGAATATCGGTGAATCCACGATCGG
TGGCTCCGACTGTGCCCTTGTTAAAGTGGCACGAGTCATCGATGGCCTCG
TAGGGATAGGACTTCTCGGTATCGATGCCTCCATTATCCTTAATATAGCG
GAAGGCATTGTCCATGAGACCGCCGTTGCATCCATTGTTGCCGTACTTGG
TGGAGCAATCGACCAGATTCTGCTCGGACAGCGAGACGAGGACACCGGAC
TTGCGGAAATGCTGACCCTCGAGGGCGCCTGTGCTGGAGAAGGCCCAGCA
GCTGCCGCAGTGTCCCTGATCCTTGACGGCGGTCACAGCTCCCTTGGTGC
GCCAGTCCACAGATTTGGGCAGCGTCACATGAGCCGGCGAGATGAAGGTG
ACTCCCTTGAAGCTTTCATCGGCGGCACGCAGTTGCTTGTGCAGAGTGTA
GTTGAAGCCGTTCATCAGCTGACGGAATTCGTGGTGCAGCAAATCGGCGT
ACTTATTGACCGCCAGTTTGAAGCTCACCT

BO18001.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6692-PB 1026 Cp1-RB 212..1023 830..19 4060 100 Minus
CG6692-PA 1026 Cp1-RA 212..1023 830..19 4060 100 Minus
CG6692-PC 1116 Cp1-RC 302..1113 830..19 4060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-RD 1481 CG6692-RD 427..1238 830..19 4060 100 Minus
Cp1-RE 1662 CG6692-RE 608..1419 830..19 4060 100 Minus
Cp1-RC 1369 CG6692-RC 315..1126 830..19 4060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13967029..13967738 728..19 3550 100 Minus
2R 25286936 2R 13966867..13966969 830..728 515 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:49:31 has no hits.

BO18001.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:44 Download gff for BO18001.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6692-PC 302..1116 18..830 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:19 Download gff for BO18001.3prime
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 315..1132 13..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:53 Download gff for BO18001.3prime
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 315..1132 13..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:53 Download gff for BO18001.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13966867..13966969 728..830 100 -> Minus
2R 13967030..13967744 13..727 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:19 Download gff for BO18001.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9854372..9854474 728..830 100 -> Minus
arm_2R 9854535..9855249 13..727 99   Minus

BO18001.5prime Sequence

876 bp (742 high quality bases) assembled on 2006-10-13

> BO18001.5prime
GAAGTTATCAGTCGACATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCC
TGCTGGCGGTGGCTCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAA
TGGCATACGTTCAAGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGA
GGAGCGTTTCCGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCA
AGCACAACCAGCGATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTC
AATAAGTACGCCGATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGG
CTTCAACTACACTCTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCA
AGGGAGTCACCTTCATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTG
GACTGGCGCACCAAGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTG
CGGCAGCTGCTGGGCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATT
TCCGCAAGTCCGGTGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGAT
TGCTCCACCAAGTACGGCAACAATGGATGCAACGGCGGTCTCATGGACAA
TGCCTTCCGCTATATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCT
ATCCCTACGAGGCCATCGATGACTCGTGCCACTTTAACAAGGGCACAGTC
GGAGCCACCGATCGTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAA
GATGGCCGAGGCTGTGGCCACCGTTGGTCCCGTTTCCGTCGCCATCGATG
CCTCCCACGAGTCGTTCCAGTTCTACTCGGAGGGCGTCTACAACGAGCCG
CAGTGTGATGCCCAGAATCTGGATCA

BO18001.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6692-PB 1026 Cp1-RB 1..860 17..876 4300 100 Plus
CG6692-PA 1026 Cp1-RA 1..860 17..876 4300 100 Plus
CG6692-PC 1116 Cp1-RC 91..950 17..876 4300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-RC 1369 CG6692-RC 104..963 17..876 4300 100 Plus
Cp1-RA 1486 CG6692-RA 221..1080 17..876 4300 100 Plus
Cp1-RD 1481 CG6692-RD 313..1075 114..876 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13967029..13967575 330..876 2735 100 Plus
2R 25286936 2R 13966753..13966969 114..330 1085 100 Plus
2R 25286936 2R 13962238..13962336 17..115 495 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:49:38 has no hits.

BO18001.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:45 Download gff for BO18001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6692-PC 85..949 7..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:21 Download gff for BO18001.5prime
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 215..1079 7..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:05 Download gff for BO18001.5prime
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 215..1079 7..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:05 Download gff for BO18001.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13962232..13962336 7..115 96 -> Plus
2R 13966755..13966969 116..330 100 -> Plus
2R 13967030..13967574 331..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:21 Download gff for BO18001.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9854260..9854474 116..330 100 -> Plus
arm_2R 9849737..9849841 7..115 96 -> Plus
arm_2R 9854535..9855079 331..875 100   Plus

BO18001.complete Sequence

1057 bp assembled on 2006-10-11

GenBank Submission: FJ634275

> BO18001.complete
GAAGTTATCAGTCGACATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCC
TGCTGGCGGTGGCTCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAA
TGGCATACGTTCAAGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGA
GGAGCGTTTCCGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCA
AGCACAACCAGCGATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTC
AATAAGTACGCCGATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGG
CTTCAACTACACTCTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCA
AGGGAGTCACCTTCATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTG
GACTGGCGCACCAAGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTG
CGGCAGCTGCTGGGCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATT
TCCGCAAGTCCGGTGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGAT
TGCTCCACCAAGTACGGCAACAATGGATGCAACGGCGGTCTCATGGACAA
TGCCTTCCGCTATATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCT
ATCCCTACGAGGCCATCGATGACTCGTGCCACTTTAACAAGGGCACAGTC
GGAGCCACCGATCGTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAA
GATGGCCGAGGCTGTGGCCACCGTTGGTCCCGTTTCCGTCGCCATCGATG
CCTCCCACGAGTCGTTCCAGTTCTACTCGGAGGGCGTCTACAACGAGCCG
CAGTGTGATGCCCAGAATCTGGATCACGGTGTGCTGGTCGTTGGCTTCGG
CACCGACGAGTCCGGCGAGGATTACTGGCTGGTGAAGAACTCGTGGGGCA
CCACCTGGGGCGACAAGGGCTTCATCAAGATGCTGCGCAACAAGGAGAAC
CAGTGCGGCATCGCTAGCGCCTCCAGCTATCCCCTGGTCGCAAGCTTTCT
AGACCAT

BO18001.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-RC 1116 CG6692-PC 91..1113 17..1039 5115 100 Plus
Cp1-RA 1026 CG6692-PA 1..1023 17..1039 5115 100 Plus
Cp1-RE 1017 CG6692-PE 90..1014 115..1039 4625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-RC 1369 CG6692-RC 104..1126 17..1039 5115 100 Plus
Cp1-RA 1486 CG6692-RA 221..1243 17..1039 5115 100 Plus
Cp1-RD 1481 CG6692-RD 313..1238 114..1039 4630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13967029..13967738 330..1039 3550 100 Plus
2R 25286936 2R 13966753..13966969 114..330 1085 100 Plus
2R 25286936 2R 13962238..13962336 17..115 495 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:48:14 has no hits.

BO18001.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:09 Download gff for BO18001.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 85..1116 7..1040 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:36 Download gff for BO18001.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 98..1132 7..1045 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:52 Download gff for BO18001.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 221..1243 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:09 Download gff for BO18001.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RC 98..1132 7..1045 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:46 Download gff for BO18001.complete
Subject Subject Range Query Range Percent Splice Strand
Cp1-RA 221..1243 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:46 Download gff for BO18001.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13962238..13962336 17..115 100 -> Plus
2R 13966755..13966969 116..330 100 -> Plus
2R 13967030..13967738 331..1041 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:52 Download gff for BO18001.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9854260..9854474 116..330 100 -> Plus
arm_2R 9849743..9849841 17..115 100 -> Plus
arm_2R 9854535..9855243 331..1041 99   Plus

BO18001.pep Sequence

Translation from 16 to 1057

> BO18001.pep
MRTAVLLPLLALLAVAQAVSFADVVMEEWHTFKLEHRKNYQDETEERFRL
KIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTL
HKQLRAADESFKGVTFISPAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWA
FSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYI
KDNGGIDTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAV
ATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESG
EDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASSYPLVASFLDH

BO18001.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cp1-PA 341 CG6692-PA 1..341 1..341 1822 100 Plus
Cp1-PC 371 CG6692-PC 31..371 1..341 1822 100 Plus
Cp1-PE 338 CG6692-PE 31..338 34..341 1661 100 Plus
Cp1-PD 249 CG6692-PD 1..249 93..341 1349 100 Plus
CG4847-PE 390 CG4847-PE 79..390 26..341 621 41.7 Plus