Clone Sequence Records
BO18001.3prime Sequence
830 bp (810 high quality bases) assembled on 2006-10-13
> BO18001.3prime
ATGGTCTAGAAAGCTTGCGACCAGGGGATAGCTGGAGGCGCTAGCGATGC
CGCACTGGTTCTCCTTGTTGCGCAGCATCTTGATGAAGCCCTTGTCGCCC
CAGGTGGTGCCCCACGAGTTCTTCACCAGCCAGTAATCCTCGCCGGACTC
GTCGGTGCCGAAGCCAACGACCAGCACACCGTGATCCAGATTCTGGGCAT
CACACTGCGGCTCGTTGTAGACGCCCTCCGAGTAGAACTGGAACGACTCG
TGGGAGGCATCGATGGCGACGGAAACGGGACCAACGGTGGCCACAGCCTC
GGCCATCTTCTTCTCATCACCCTGGGGAATATCGGTGAATCCACGATCGG
TGGCTCCGACTGTGCCCTTGTTAAAGTGGCACGAGTCATCGATGGCCTCG
TAGGGATAGGACTTCTCGGTATCGATGCCTCCATTATCCTTAATATAGCG
GAAGGCATTGTCCATGAGACCGCCGTTGCATCCATTGTTGCCGTACTTGG
TGGAGCAATCGACCAGATTCTGCTCGGACAGCGAGACGAGGACACCGGAC
TTGCGGAAATGCTGACCCTCGAGGGCGCCTGTGCTGGAGAAGGCCCAGCA
GCTGCCGCAGTGTCCCTGATCCTTGACGGCGGTCACAGCTCCCTTGGTGC
GCCAGTCCACAGATTTGGGCAGCGTCACATGAGCCGGCGAGATGAAGGTG
ACTCCCTTGAAGCTTTCATCGGCGGCACGCAGTTGCTTGTGCAGAGTGTA
GTTGAAGCCGTTCATCAGCTGACGGAATTCGTGGTGCAGCAAATCGGCGT
ACTTATTGACCGCCAGTTTGAAGCTCACCT
BO18001.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6692-PB | 1026 | Cp1-RB | 212..1023 | 830..19 | 4060 | 100 | Minus |
CG6692-PA | 1026 | Cp1-RA | 212..1023 | 830..19 | 4060 | 100 | Minus |
CG6692-PC | 1116 | Cp1-RC | 302..1113 | 830..19 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp1-RD | 1481 | CG6692-RD | 427..1238 | 830..19 | 4060 | 100 | Minus |
Cp1-RE | 1662 | CG6692-RE | 608..1419 | 830..19 | 4060 | 100 | Minus |
Cp1-RC | 1369 | CG6692-RC | 315..1126 | 830..19 | 4060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13967029..13967738 | 728..19 | 3550 | 100 | Minus |
2R | 25286936 | 2R | 13966867..13966969 | 830..728 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:49:31 has no hits.
BO18001.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:44 Download gff for
BO18001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6692-PC | 302..1116 | 18..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:19 Download gff for
BO18001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RC | 315..1132 | 13..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:53 Download gff for
BO18001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RC | 315..1132 | 13..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:53 Download gff for
BO18001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13966867..13966969 | 728..830 | 100 | -> | Minus |
2R | 13967030..13967744 | 13..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:19 Download gff for
BO18001.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9854372..9854474 | 728..830 | 100 | -> | Minus |
arm_2R | 9854535..9855249 | 13..727 | 99 | | Minus |
BO18001.5prime Sequence
876 bp (742 high quality bases) assembled on 2006-10-13
> BO18001.5prime
GAAGTTATCAGTCGACATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCC
TGCTGGCGGTGGCTCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAA
TGGCATACGTTCAAGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGA
GGAGCGTTTCCGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCA
AGCACAACCAGCGATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTC
AATAAGTACGCCGATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGG
CTTCAACTACACTCTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCA
AGGGAGTCACCTTCATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTG
GACTGGCGCACCAAGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTG
CGGCAGCTGCTGGGCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATT
TCCGCAAGTCCGGTGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGAT
TGCTCCACCAAGTACGGCAACAATGGATGCAACGGCGGTCTCATGGACAA
TGCCTTCCGCTATATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCT
ATCCCTACGAGGCCATCGATGACTCGTGCCACTTTAACAAGGGCACAGTC
GGAGCCACCGATCGTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAA
GATGGCCGAGGCTGTGGCCACCGTTGGTCCCGTTTCCGTCGCCATCGATG
CCTCCCACGAGTCGTTCCAGTTCTACTCGGAGGGCGTCTACAACGAGCCG
CAGTGTGATGCCCAGAATCTGGATCA
BO18001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6692-PB | 1026 | Cp1-RB | 1..860 | 17..876 | 4300 | 100 | Plus |
CG6692-PA | 1026 | Cp1-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
CG6692-PC | 1116 | Cp1-RC | 91..950 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp1-RC | 1369 | CG6692-RC | 104..963 | 17..876 | 4300 | 100 | Plus |
Cp1-RA | 1486 | CG6692-RA | 221..1080 | 17..876 | 4300 | 100 | Plus |
Cp1-RD | 1481 | CG6692-RD | 313..1075 | 114..876 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13967029..13967575 | 330..876 | 2735 | 100 | Plus |
2R | 25286936 | 2R | 13966753..13966969 | 114..330 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 13962238..13962336 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:49:38 has no hits.
BO18001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:45 Download gff for
BO18001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6692-PC | 85..949 | 7..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:21 Download gff for
BO18001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RA | 215..1079 | 7..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:05 Download gff for
BO18001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RA | 215..1079 | 7..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:05 Download gff for
BO18001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13962232..13962336 | 7..115 | 96 | -> | Plus |
2R | 13966755..13966969 | 116..330 | 100 | -> | Plus |
2R | 13967030..13967574 | 331..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:21 Download gff for
BO18001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9854260..9854474 | 116..330 | 100 | -> | Plus |
arm_2R | 9849737..9849841 | 7..115 | 96 | -> | Plus |
arm_2R | 9854535..9855079 | 331..875 | 100 | | Plus |
BO18001.complete Sequence
1057 bp assembled on 2006-10-11
GenBank Submission: FJ634275
> BO18001.complete
GAAGTTATCAGTCGACATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCC
TGCTGGCGGTGGCTCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAA
TGGCATACGTTCAAGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGA
GGAGCGTTTCCGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCA
AGCACAACCAGCGATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTC
AATAAGTACGCCGATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGG
CTTCAACTACACTCTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCA
AGGGAGTCACCTTCATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTG
GACTGGCGCACCAAGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTG
CGGCAGCTGCTGGGCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATT
TCCGCAAGTCCGGTGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGAT
TGCTCCACCAAGTACGGCAACAATGGATGCAACGGCGGTCTCATGGACAA
TGCCTTCCGCTATATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCT
ATCCCTACGAGGCCATCGATGACTCGTGCCACTTTAACAAGGGCACAGTC
GGAGCCACCGATCGTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAA
GATGGCCGAGGCTGTGGCCACCGTTGGTCCCGTTTCCGTCGCCATCGATG
CCTCCCACGAGTCGTTCCAGTTCTACTCGGAGGGCGTCTACAACGAGCCG
CAGTGTGATGCCCAGAATCTGGATCACGGTGTGCTGGTCGTTGGCTTCGG
CACCGACGAGTCCGGCGAGGATTACTGGCTGGTGAAGAACTCGTGGGGCA
CCACCTGGGGCGACAAGGGCTTCATCAAGATGCTGCGCAACAAGGAGAAC
CAGTGCGGCATCGCTAGCGCCTCCAGCTATCCCCTGGTCGCAAGCTTTCT
AGACCAT
BO18001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp1-RC | 1116 | CG6692-PC | 91..1113 | 17..1039 | 5115 | 100 | Plus |
Cp1-RA | 1026 | CG6692-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Cp1-RE | 1017 | CG6692-PE | 90..1014 | 115..1039 | 4625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp1-RC | 1369 | CG6692-RC | 104..1126 | 17..1039 | 5115 | 100 | Plus |
Cp1-RA | 1486 | CG6692-RA | 221..1243 | 17..1039 | 5115 | 100 | Plus |
Cp1-RD | 1481 | CG6692-RD | 313..1238 | 114..1039 | 4630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13967029..13967738 | 330..1039 | 3550 | 100 | Plus |
2R | 25286936 | 2R | 13966753..13966969 | 114..330 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 13962238..13962336 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:48:14 has no hits.
BO18001.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:09 Download gff for
BO18001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RC | 85..1116 | 7..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:36 Download gff for
BO18001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RC | 98..1132 | 7..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:52 Download gff for
BO18001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RA | 221..1243 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:09 Download gff for
BO18001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RC | 98..1132 | 7..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:46 Download gff for
BO18001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cp1-RA | 221..1243 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:46 Download gff for
BO18001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13962238..13962336 | 17..115 | 100 | -> | Plus |
2R | 13966755..13966969 | 116..330 | 100 | -> | Plus |
2R | 13967030..13967738 | 331..1041 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:52 Download gff for
BO18001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9854260..9854474 | 116..330 | 100 | -> | Plus |
arm_2R | 9849743..9849841 | 17..115 | 100 | -> | Plus |
arm_2R | 9854535..9855243 | 331..1041 | 99 | | Plus |
BO18001.pep Sequence
Translation from 16 to 1057
> BO18001.pep
MRTAVLLPLLALLAVAQAVSFADVVMEEWHTFKLEHRKNYQDETEERFRL
KIFNENKHKIAKHNQRFAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTL
HKQLRAADESFKGVTFISPAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWA
FSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYI
KDNGGIDTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAV
ATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESG
EDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASSYPLVASFLDH
BO18001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cp1-PA | 341 | CG6692-PA | 1..341 | 1..341 | 1822 | 100 | Plus |
Cp1-PC | 371 | CG6692-PC | 31..371 | 1..341 | 1822 | 100 | Plus |
Cp1-PE | 338 | CG6692-PE | 31..338 | 34..341 | 1661 | 100 | Plus |
Cp1-PD | 249 | CG6692-PD | 1..249 | 93..341 | 1349 | 100 | Plus |
CG4847-PE | 390 | CG4847-PE | 79..390 | 26..341 | 621 | 41.7 | Plus |