Clone Sequence Records
BO18002.3prime Sequence
790 bp (716 high quality bases) assembled on 2006-10-13
> BO18002.3prime
ATGGTCTAGAAAGCTTGCTCTAAGCGTATAGCCCGTCAAAAGGTAGCCAC
TATTTCCGCTCATATTCACTTCCGGATGTGTGCGATTGGGCAGGATCTGG
TAGGTGCGCAGCCAGTTCGAGGTCAAGTGCAGACCCGTCACCTTGCCTGT
TGTTTTCAGCTCCATGAATGTCTCTTGTAACAGCTCCTTGCAGGTGCTGA
ATACCACCACGGGTCTTGAGGGTTTCACAAGAGGCAGCAGGGCTTGCAGA
ATGTTGGATGGGTGCTCCTTGGCGGCCACCACCAGACTGTCGAATTCGGC
GTGCATCAGGGCCGTGGCCCGCTTGTTTTCCAAATGCCAGCGCGGAGGTC
CCTTTGCTCCTTCTCTACCACTATTTGACTCATCCAGCTTGGGTTTCTTT
GTGGTCGGTTCTATCGCCTCAGGTTGTTCCTCCGTTGGCGTCTCCAGCTG
GGTTTCCTGAGGTTCGTTTTCACTGGGCTCCACAACGGGAATATCTGTGG
CCTTCGCGTCCCCTCCTTGGTAAAACTCCCTTAAAACGGAATAGAGATTA
ACGGAAACACATCGCTGTTGCTGCTCCAGGGGTAGTTTCAGAGCTGAGAG
CGCCTGCTTCTGGGGCACATTGCCCGGGTGCATGTGCACCAGGGTGCCCT
CCGTGCCTGCGCCTATAGAGTTGAGCATGGCAGCCGGCAGTAGACCATTG
GTACCACTCTCGTACAGCAGATAGCTGCCGAATCCACAAACGCCCGAGTA
AGAAATAATTTGCGATAAAGTGTCAACGCGAATGCCCATG
BO18002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-PB | 1335 | CG9596-RB | 561..1332 | 790..19 | 3860 | 100 | Minus |
| CG9596-PA | 1395 | CG9596-RA | 561..992 | 790..359 | 2160 | 100 | Minus |
| CG9596-PA | 1395 | CG9596-RA | 1050..1392 | 361..19 | 1715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-RD | 1613 | CG9596-RD | 797..1568 | 790..19 | 3860 | 100 | Minus |
| CG9596-RC | 2175 | CG9596-RC | 654..1425 | 790..19 | 3860 | 100 | Minus |
| CG9596-RB | 1470 | CG9596-RB | 654..1425 | 790..19 | 3860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6560576..6561007 | 359..790 | 2160 | 100 | Plus |
| 2L | 23513712 | 2L | 6560176..6560518 | 19..361 | 1715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:39:57 has no hits.
BO18002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:45 Download gff for
BO18002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-PB | 561..1335 | 18..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:54 Download gff for
BO18002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 654..1430 | 11..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:50 Download gff for
BO18002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 654..1430 | 11..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:50 Download gff for
BO18002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6560171..6560516 | 11..359 | 98 | <- | Plus |
| 2L | 6560577..6561007 | 360..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:54 Download gff for
BO18002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6560171..6560516 | 11..359 | 98 | <- | Plus |
| arm_2L | 6560577..6561007 | 360..790 | 100 | | Plus |
BO18002.5prime Sequence
864 bp (707 high quality bases) assembled on 2006-10-13
> BO18002.5prime
GAAGTTATCAGTCGACATGGCCACCGAAGAGGACATCCCCAGAATCCAAT
TGGGCGACTACATCGTCATCCAGCGGCAGAAATATACGAAGCTACAAAAA
TTCGGCAGTCTGGACACCACGGCCACATTGGGCAAAGAAACACTGGAGCT
GAAGTCTCTTTTGGACCAACCCTATGGCTCCACGTTCAAGATGTGCGTCA
AAGAGACAAAGCCGGGTAAAAGGGGCGCCCAGAGACAACACACCTTGGAG
CTGTGCAGCGAGACTGAGCTGAGAAGCACGCGAGAGGTTCTGGGCATCTC
CAGCAGTGGAGCGGATAATCGGGACATCCGGGATGATGGAGAAGCGCAGA
CCCTGAAACCAGAGGACATTGCGCAGCTGCGTGAGGAGTGCAACGACTCC
AGCAAAATCATCGAGAAGCTGGTGGAGAATTCTAAGACTTTCCACAACCG
AACGGAGTACTCCCAAGAGAAGTACCTGCTAAAGAAGGAGAAAAAGTATT
TCGAGTTCGTTCAAATCCGCCAGCCAACGATCCGTCTGATGCTGGACATC
TTCTACCGCCAAGACTCGGAAAAGGTCATGGGCATTCGCGTTGACACTTT
ATCGCAAATTATTTCTTACTCGGGCGTTTGTGGATTCGGCAGCTATCTGC
TGTACGAGAGTGGTACCAATGGTCTACTGCCGGCTGCCATGCTCAACTCT
ATAGGCGCAGGCACGGAGGGCACCCTGGTGCACATGCACCCGGGCAATGT
GCCACAGAAGCAGGCGCTCTCAGCTCTGAAACTACCCCTGGAGCAGCAAC
AGCGATGTGTTTCCGTTAATCTCTATTCCGTTTTAAGGGAAGTTTTACCA
AGGAGGGGACGCGA
BO18002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-PA | 1395 | CG9596-RA | 1..824 | 17..840 | 4095 | 99.8 | Plus |
| CG9596-PB | 1335 | CG9596-RB | 1..824 | 17..840 | 4095 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-RD | 1613 | CG9596-RD | 236..1083 | 16..864 | 4205 | 99.8 | Plus |
| CG9596-RC | 2175 | CG9596-RC | 93..940 | 16..864 | 4205 | 99.8 | Plus |
| CG9596-RB | 1470 | CG9596-RB | 93..940 | 16..864 | 4205 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6560721..6561568 | 864..16 | 4180 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:49:53 has no hits.
BO18002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:46 Download gff for
BO18002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-PB | 1..846 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:26 Download gff for
BO18002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 93..939 | 16..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:34 Download gff for
BO18002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 93..939 | 16..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:34 Download gff for
BO18002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6560722..6561568 | 16..863 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:26 Download gff for
BO18002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6560722..6561568 | 16..863 | 99 | -> | Minus |
BO18002.complete Sequence
1366 bp assembled on 2006-10-11
GenBank Submission: FJ634276
> BO18002.complete
GAAGTTATCAGTCGACATGGCCACCGAAGAGGACATCCCCAGAATCCAAT
TGGGCGACTACATCGTCATCCAGCGGCAGAAATATACGAAGCTACAAAAA
TTCGGCAGTCTGGACACCACGGCCACATTGGGCAAAGAAACACTGGAGCT
GAAGTCTCTTTTGGACCAACCCTATGGCTCCACGTTCAAGATGTGCGTCA
AAGAGACAAAGCCGGGTAAAAGGGGCGCCCAGAGACAACACACCTTGGAG
CTGTGCAGCGAGACTGAGCTGAGAAGCACGCGAGAGGTTCTGGGCATCTC
CAGCAGTGGAGCGGATAATCGGGACATCCGGGATGATGGAGAAGCGCAGA
CCCTGAAACCAGAGGACATTGCGCAGCTGCGTGAGGAGTGCAACGACTCC
AGCAAAATCATCGAGAAGCTGGTGGAGAATTCTAAGACTTTCCACAACCG
AACGGAGTACTCCCAAGAGAAGTACCTGCTAAAGAAGGAGAAAAAGTATT
TCGAGTTCGTTCAAATCCGCCAGCCAACGATCCGTCTGATGCTGGACATC
TTCTACCGCCAAGACTCGGAAAAGGTCATGGGCATTCGCGTTGACACTTT
ATCGCAAATTATTTCTTACTCGGGCGTTTGTGGATTCGGCAGCTATCTGC
TGTACGAGAGTGGTACCAATGGTCTACTGCCGGCTGCCATGCTCAACTCT
ATAGGCGCAGGCACGGAGGGCACCCTGGTGCACATGCACCCGGGCAATGT
GCCCCAGAAGCAGGCGCTCTCAGCTCTGAAACTACCCCTGGAGCAGCAAC
AGCGATGTGTTTCCGTTAATCTCTATTCCGTTTTAAGGGAGTTTTACCAA
GGAGGGGACGCGAAGGCCACAGATATTCCCGTTGTGGAGCCCAGTGAAAA
CGAACCTCAGGAAACCCAGCTGGAGACGCCAACGGAGGAACAACCTGAGG
CGATAGAACCGACCACAAAGAAACCCAAGCTGGATGAGTCAAATAGTGGT
AGAGAAGGAGCAAAGGGACCTCCGCGCTGGCATTTGGAAAACAAGCGGGC
CACGGCCCTGATGCACGCCGAATTCGACAGTCTGGTGGTGGCCGCCAAGG
AGCACCCATCCAACATTCTGCAAGCCCTGCTGCCTCTTGTGAAACCCTCA
AGACCCGTGGTGGTATTCAGCACCTGCAAGGAGCTGTTACAAGAGACATT
CATGGAGCTGAAAACAACAGGCAAGGTGACGGGTCTGCACTTGACCTCGA
ACTGGCTGCGCACCTACCAGATCCTGCCCAATCGCACACATCCGGAAGTG
AATATGAGCGGAAATAGTGGCTACCTTTTGACGGGCTATACGCTTAGAGC
AAGCTTTCTAGACCAT
BO18002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-RD | 1335 | CG9596-PD | 1..1332 | 17..1348 | 6660 | 100 | Plus |
| CG9596-RC | 1335 | CG9596-PC | 1..1332 | 17..1348 | 6660 | 100 | Plus |
| CG9596-RB | 1335 | CG9596-PB | 1..1332 | 17..1348 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-RD | 1613 | CG9596-RD | 236..1568 | 16..1348 | 6665 | 100 | Plus |
| CG9596-RC | 2175 | CG9596-RC | 93..1425 | 16..1348 | 6665 | 100 | Plus |
| CG9596-RB | 1470 | CG9596-RB | 93..1425 | 16..1348 | 6665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6560576..6561568 | 1008..16 | 4965 | 100 | Minus |
| 2L | 23513712 | 2L | 6560176..6560518 | 1348..1006 | 1715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:52:52 has no hits.
BO18002.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:11 Download gff for
BO18002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 1..1335 | 17..1349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:39 Download gff for
BO18002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 93..1430 | 16..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:35 Download gff for
BO18002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 94..1425 | 17..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:11 Download gff for
BO18002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 42..1379 | 16..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:01 Download gff for
BO18002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9596-RB | 94..1425 | 17..1350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:01 Download gff for
BO18002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6560174..6560516 | 1008..1350 | 99 | <- | Minus |
| 2L | 6560577..6561567 | 17..1007 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:35 Download gff for
BO18002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6560174..6560516 | 1008..1350 | 99 | <- | Minus |
| arm_2L | 6560577..6561567 | 17..1007 | 100 | | Minus |
BO18002.pep Sequence
Translation from 16 to 1366
> BO18002.pep
MATEEDIPRIQLGDYIVIQRQKYTKLQKFGSLDTTATLGKETLELKSLLD
QPYGSTFKMCVKETKPGKRGAQRQHTLELCSETELRSTREVLGISSSGAD
NRDIRDDGEAQTLKPEDIAQLREECNDSSKIIEKLVENSKTFHNRTEYSQ
EKYLLKKEKKYFEFVQIRQPTIRLMLDIFYRQDSEKVMGIRVDTLSQIIS
YSGVCGFGSYLLYESGTNGLLPAAMLNSIGAGTEGTLVHMHPGNVPQKQA
LSALKLPLEQQQRCVSVNLYSVLREFYQGGDAKATDIPVVEPSENEPQET
QLETPTEEQPEAIEPTTKKPKLDESNSGREGAKGPPRWHLENKRATALMH
AEFDSLVVAAKEHPSNILQALLPLVKPSRPVVVFSTCKELLQETFMELKT
TGKVTGLHLTSNWLRTYQILPNRTHPEVNMSGNSGYLLTGYTLRASFLDH
BO18002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9596-PD | 444 | CG9596-PD | 1..444 | 1..444 | 2287 | 100 | Plus |
| CG9596-PC | 444 | CG9596-PC | 1..444 | 1..444 | 2287 | 100 | Plus |
| CG9596-PB | 444 | CG9596-PB | 1..444 | 1..444 | 2287 | 100 | Plus |
