Clone Sequence Records
BO18003.3prime Sequence
783 bp (707 high quality bases) assembled on 2006-10-13
> BO18003.3prime
ATGGTCTAGAAAGCTTGCCTCAACGAACTCCGGTTCGCCGGAGTATGTGC
AACCTGGATTCTTGATAATGTGCCCGGCTGCATAGTTTCCGCACCTGATG
CAGACATCCAGCGACTTGCCCTGCACAAACTGCGATAGGAAACCTCCAAC
GAATGCATCCCCAGCGCCATTGGTATCGACAATTTCATGCACCGCCAATT
TCGTGACCGGGAATTCCTGCACCGAATCCTGCTGTATAAGCAGTACAGGA
TCGCAGCCCTGCGTGAGAATGGCAATGCGCGGCCGCGTCGGGTTTTTCTT
CTCCATCGCCACCAGTCGCTTGCCAATCTCGCGCAGGTCCCCGCTAGGCC
ACTGCTGGGCCTCGGCGAACGCCTGAGCCTCCGCCTCGTTGCCAAAGATG
ATGTCCACGTAAGGCAGGGCGGCCAGCAGCGGTGCCATGTAGAATTGCGA
TATGAATGGTGCGCTGAGGTTCATTAGGAACGGTCGCTGTTTGGCGTGGG
CGGTGGCCGCCACCTGCATAATGCTTGGCGGGTTCACAGTGAGGAAGAAG
CCCGAAATGTAGTAGTACTGGGCGTTATCCACCAGAGCCTTGTTGCTGGG
CTCCTCCAGGTGATCGATGGTGAAGTTATTGGCGGCCGCCAGATTAGCGC
AGAGCGATCGGTGGGTGCCGGTGATCAGAACGGCACAGGTTCCCGTGGGC
ACGTCCTTCTTCACCTGGTAGTGAACATCCAGTCCGGCGGCTTGCGCCTT
TTCCTTCAAGATATTGGCGTACCGATCCTCGCC
BO18003.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11255-PA | 1038 | CG11255-RA | 271..1035 | 783..19 | 3825 | 100 | Minus |
CG11255-PB | 1038 | CG11255-RB | 271..1035 | 783..19 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RC | 1847 | CG11255-RC | 505..1269 | 783..19 | 3825 | 100 | Minus |
AdenoK-RB | 1387 | CG11255-RB | 312..1076 | 783..19 | 3825 | 100 | Minus |
AdenoK-RA | 1580 | CG11255-RA | 505..1269 | 783..19 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13020293..13020827 | 19..553 | 2675 | 100 | Plus |
3L | 28110227 | 3L | 13021073..13021304 | 552..783 | 1160 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:16:34 has no hits.
BO18003.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:47 Download gff for
BO18003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-PB | 271..1038 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:03 Download gff for
BO18003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RA | 505..1272 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:05 Download gff for
BO18003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdenoK-RA | 505..1272 | 15..783 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:05 Download gff for
BO18003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13020289..13020826 | 15..552 | 99 | <- | Plus |
3L | 13021074..13021304 | 553..783 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:03 Download gff for
BO18003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13013389..13013926 | 15..552 | 99 | <- | Plus |
arm_3L | 13014174..13014404 | 553..783 | 100 | | Plus |
BO18003.5prime Sequence
849 bp (766 high quality bases) assembled on 2006-10-13
> BO18003.5prime
GAAGTTATCAGTCGACATGTGCGATCGCGTCAGAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCA
TTCTCACGCAGGGCTGCGATCCTGTACTGCCTATACAGCAGGAATCGGT
BO18003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11255-PB | 1038 | CG11255-RB | 1..833 | 17..849 | 4115 | 99.7 | Plus |
CG11255-PA | 1038 | CG11255-RA | 18..833 | 34..849 | 4030 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RB | 1387 | CG11255-RB | 40..874 | 15..849 | 4145 | 99.8 | Plus |
AdenoK-RC | 1847 | CG11255-RC | 252..1067 | 34..849 | 4050 | 99.8 | Plus |
AdenoK-RA | 1580 | CG11255-RA | 252..1067 | 34..849 | 4050 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13021073..13021560 | 518..31 | 2440 | 100 | Minus |
3L | 28110227 | 3L | 13020495..13020827 | 849..517 | 1635 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:06:45 has no hits.
BO18003.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:48 Download gff for
BO18003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-PB | 1..833 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:07 Download gff for
BO18003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RB | 36..874 | 10..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:46 Download gff for
BO18003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdenoK-RB | 36..874 | 10..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:46 Download gff for
BO18003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13020495..13020826 | 518..849 | 99 | <- | Minus |
3L | 13021074..13021557 | 34..517 | 100 | <- | Minus |
3L | 13021628..13021650 | 10..33 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:07 Download gff for
BO18003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13013595..13013926 | 518..849 | 99 | <- | Minus |
arm_3L | 13014174..13014657 | 34..517 | 100 | <- | Minus |
arm_3L | 13014728..13014750 | 10..33 | 91 | | Minus |
BO18003.complete Sequence
1069 bp assembled on 2006-10-11
GenBank Submission: FJ634277
> BO18003.complete
GAAGTTATCAGTCGACATGTGCGATCGCGTCAGAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCA
TTCTCACGCAGGGCTGCGATCCTGTACTGCTTATACAGCAGGATTCGGTG
CAGGAATTCCCGGTCACGAAATTGGCGGTGCATGAAATTGTCGATACCAA
TGGCGCTGGGGATGCATTCGTTGGAGGTTTCCTATCGCAGTTTGTGCAGG
GCAAGTCGCTGGATGTCTGCATCAGGTGCGGAAACTATGCAGCCGGGCAC
ATTATCAAGAATCCAGGTTGCACATACTCCGGCGAACCGGAGTTCGTTGA
GGCAAGCTTTCTAGACCAT
BO18003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RB | 1038 | CG11255-PB | 1..1035 | 17..1051 | 5175 | 100 | Plus |
AdenoK-RC | 1038 | CG11255-PC | 18..1035 | 34..1051 | 5090 | 100 | Plus |
AdenoK-RA | 1038 | CG11255-PA | 18..1035 | 34..1051 | 5090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-RB | 1387 | CG11255-RB | 40..1076 | 15..1051 | 5185 | 100 | Plus |
AdenoK-RC | 1847 | CG11255-RC | 252..1269 | 34..1051 | 5090 | 100 | Plus |
AdenoK-RA | 1580 | CG11255-RA | 252..1269 | 34..1051 | 5090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13020293..13020827 | 1051..517 | 2675 | 100 | Minus |
3L | 28110227 | 3L | 13021073..13021560 | 518..31 | 2440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:57:52 has no hits.
BO18003.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:12 Download gff for
BO18003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RB | 1..1038 | 17..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:41 Download gff for
BO18003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RB | 11..1054 | 10..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:10 Download gff for
BO18003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RB | 42..1076 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:12 Download gff for
BO18003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11255-RB | 11..1054 | 10..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:12 Download gff for
BO18003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdenoK-RB | 42..1076 | 17..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:12 Download gff for
BO18003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13020291..13020826 | 518..1053 | 99 | <- | Minus |
3L | 13021074..13021557 | 34..517 | 100 | <- | Minus |
3L | 13021628..13021644 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:10 Download gff for
BO18003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13013391..13013926 | 518..1053 | 99 | <- | Minus |
arm_3L | 13014174..13014657 | 34..517 | 100 | <- | Minus |
arm_3L | 13014728..13014744 | 17..33 | 100 | | Minus |
BO18003.pep Sequence
Translation from 16 to 1069
> BO18003.pep
MCDRVREGILVGCGNPLLDISAVVPLNFLQKYSMNEDDAILAEDRHMPIY
GELVEGYQAEFLAGGSVQNSLRIAQWILRQPRVAVFFGCVGEDRYANILK
EKAQAAGLDVHYQVKKDVPTGTCAVLITGTHRSLCANLAAANNFTIDHLE
EPSNKALVDNAQYYYISGFFLTVNPPSIMQVAATAHAKQRPFLMNLSAPF
ISQFYMAPLLAALPYVDIIFGNEAEAQAFAEAQQWPSGDLREIGKRLVAM
EKKNPTRPRIAILTQGCDPVLLIQQDSVQEFPVTKLAVHEIVDTNGAGDA
FVGGFLSQFVQGKSLDVCIRCGNYAAGHIIKNPGCTYSGEPEFVEASFLD
H
BO18003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdenoK-PB | 345 | CG11255-PB | 1..345 | 1..345 | 1800 | 100 | Plus |
AdenoK-PC | 345 | CG11255-PC | 1..345 | 1..345 | 1771 | 98.6 | Plus |
AdenoK-PA | 345 | CG11255-PA | 1..345 | 1..345 | 1771 | 98.6 | Plus |
CG3809-PA | 396 | CG3809-PA | 54..393 | 7..345 | 707 | 44 | Plus |
Ady43A-PA | 366 | CG1851-PA | 87..363 | 64..335 | 267 | 28 | Plus |