Clone BO18003 Report

Search the DGRC for BO18003

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG11255-RB
Protein status:BO18003.pep: validated full length
Sequenced Size:1069

Clone Sequence Records

BO18003.3prime Sequence

783 bp (707 high quality bases) assembled on 2006-10-13

> BO18003.3prime
ATGGTCTAGAAAGCTTGCCTCAACGAACTCCGGTTCGCCGGAGTATGTGC
AACCTGGATTCTTGATAATGTGCCCGGCTGCATAGTTTCCGCACCTGATG
CAGACATCCAGCGACTTGCCCTGCACAAACTGCGATAGGAAACCTCCAAC
GAATGCATCCCCAGCGCCATTGGTATCGACAATTTCATGCACCGCCAATT
TCGTGACCGGGAATTCCTGCACCGAATCCTGCTGTATAAGCAGTACAGGA
TCGCAGCCCTGCGTGAGAATGGCAATGCGCGGCCGCGTCGGGTTTTTCTT
CTCCATCGCCACCAGTCGCTTGCCAATCTCGCGCAGGTCCCCGCTAGGCC
ACTGCTGGGCCTCGGCGAACGCCTGAGCCTCCGCCTCGTTGCCAAAGATG
ATGTCCACGTAAGGCAGGGCGGCCAGCAGCGGTGCCATGTAGAATTGCGA
TATGAATGGTGCGCTGAGGTTCATTAGGAACGGTCGCTGTTTGGCGTGGG
CGGTGGCCGCCACCTGCATAATGCTTGGCGGGTTCACAGTGAGGAAGAAG
CCCGAAATGTAGTAGTACTGGGCGTTATCCACCAGAGCCTTGTTGCTGGG
CTCCTCCAGGTGATCGATGGTGAAGTTATTGGCGGCCGCCAGATTAGCGC
AGAGCGATCGGTGGGTGCCGGTGATCAGAACGGCACAGGTTCCCGTGGGC
ACGTCCTTCTTCACCTGGTAGTGAACATCCAGTCCGGCGGCTTGCGCCTT
TTCCTTCAAGATATTGGCGTACCGATCCTCGCC

BO18003.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11255-PA 1038 CG11255-RA 271..1035 783..19 3825 100 Minus
CG11255-PB 1038 CG11255-RB 271..1035 783..19 3825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RC 1847 CG11255-RC 505..1269 783..19 3825 100 Minus
AdenoK-RB 1387 CG11255-RB 312..1076 783..19 3825 100 Minus
AdenoK-RA 1580 CG11255-RA 505..1269 783..19 3825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13020293..13020827 19..553 2675 100 Plus
3L 28110227 3L 13021073..13021304 552..783 1160 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:16:34 has no hits.

BO18003.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:47 Download gff for BO18003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-PB 271..1038 15..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:03 Download gff for BO18003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-RA 505..1272 15..783 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:05 Download gff for BO18003.3prime
Subject Subject Range Query Range Percent Splice Strand
AdenoK-RA 505..1272 15..783 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:05 Download gff for BO18003.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13020289..13020826 15..552 99 <- Plus
3L 13021074..13021304 553..783 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:03 Download gff for BO18003.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13013389..13013926 15..552 99 <- Plus
arm_3L 13014174..13014404 553..783 100   Plus

BO18003.5prime Sequence

849 bp (766 high quality bases) assembled on 2006-10-13

> BO18003.5prime
GAAGTTATCAGTCGACATGTGCGATCGCGTCAGAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCA
TTCTCACGCAGGGCTGCGATCCTGTACTGCCTATACAGCAGGAATCGGT

BO18003.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11255-PB 1038 CG11255-RB 1..833 17..849 4115 99.7 Plus
CG11255-PA 1038 CG11255-RA 18..833 34..849 4030 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RB 1387 CG11255-RB 40..874 15..849 4145 99.8 Plus
AdenoK-RC 1847 CG11255-RC 252..1067 34..849 4050 99.8 Plus
AdenoK-RA 1580 CG11255-RA 252..1067 34..849 4050 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13021073..13021560 518..31 2440 100 Minus
3L 28110227 3L 13020495..13020827 849..517 1635 99.4 Minus
Blast to na_te.dros performed on 2015-02-11 09:06:45 has no hits.

BO18003.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:48 Download gff for BO18003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-PB 1..833 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:07 Download gff for BO18003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11255-RB 36..874 10..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:46 Download gff for BO18003.5prime
Subject Subject Range Query Range Percent Splice Strand
AdenoK-RB 36..874 10..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:46 Download gff for BO18003.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13020495..13020826 518..849 99 <- Minus
3L 13021074..13021557 34..517 100 <- Minus
3L 13021628..13021650 10..33 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:07 Download gff for BO18003.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13013595..13013926 518..849 99 <- Minus
arm_3L 13014174..13014657 34..517 100 <- Minus
arm_3L 13014728..13014750 10..33 91   Minus

BO18003.complete Sequence

1069 bp assembled on 2006-10-11

GenBank Submission: FJ634277

> BO18003.complete
GAAGTTATCAGTCGACATGTGCGATCGCGTCAGAGAAGGAATCCTGGTCG
GATGCGGCAACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTC
CTGCAGAAGTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCG
ACACATGCCCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTC
TGGCTGGCGGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTT
CGACAGCCCAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTA
CGCCAATATCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACT
ACCAGGTGAAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACC
GGCACCCACCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCAC
CATCGATCACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCC
AGTACTACTACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATT
ATGCAGGTGGCGGCCACCGCCCACGCCAAACAGCGACCGTTCCTAATGAA
CCTCAGCGCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCG
CCCTGCCTTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCG
TTCGCCGAGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAA
GCGACTGGTGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCA
TTCTCACGCAGGGCTGCGATCCTGTACTGCTTATACAGCAGGATTCGGTG
CAGGAATTCCCGGTCACGAAATTGGCGGTGCATGAAATTGTCGATACCAA
TGGCGCTGGGGATGCATTCGTTGGAGGTTTCCTATCGCAGTTTGTGCAGG
GCAAGTCGCTGGATGTCTGCATCAGGTGCGGAAACTATGCAGCCGGGCAC
ATTATCAAGAATCCAGGTTGCACATACTCCGGCGAACCGGAGTTCGTTGA
GGCAAGCTTTCTAGACCAT

BO18003.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RB 1038 CG11255-PB 1..1035 17..1051 5175 100 Plus
AdenoK-RC 1038 CG11255-PC 18..1035 34..1051 5090 100 Plus
AdenoK-RA 1038 CG11255-PA 18..1035 34..1051 5090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-RB 1387 CG11255-RB 40..1076 15..1051 5185 100 Plus
AdenoK-RC 1847 CG11255-RC 252..1269 34..1051 5090 100 Plus
AdenoK-RA 1580 CG11255-RA 252..1269 34..1051 5090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13020293..13020827 1051..517 2675 100 Minus
3L 28110227 3L 13021073..13021560 518..31 2440 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:57:52 has no hits.

BO18003.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:12 Download gff for BO18003.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RB 1..1038 17..1055 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:41 Download gff for BO18003.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RB 11..1054 10..1055 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:10 Download gff for BO18003.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RB 42..1076 17..1053 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:12 Download gff for BO18003.complete
Subject Subject Range Query Range Percent Splice Strand
CG11255-RB 11..1054 10..1055 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:12 Download gff for BO18003.complete
Subject Subject Range Query Range Percent Splice Strand
AdenoK-RB 42..1076 17..1053 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:12 Download gff for BO18003.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13020291..13020826 518..1053 99 <- Minus
3L 13021074..13021557 34..517 100 <- Minus
3L 13021628..13021644 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:10 Download gff for BO18003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13013391..13013926 518..1053 99 <- Minus
arm_3L 13014174..13014657 34..517 100 <- Minus
arm_3L 13014728..13014744 17..33 100   Minus

BO18003.pep Sequence

Translation from 16 to 1069

> BO18003.pep
MCDRVREGILVGCGNPLLDISAVVPLNFLQKYSMNEDDAILAEDRHMPIY
GELVEGYQAEFLAGGSVQNSLRIAQWILRQPRVAVFFGCVGEDRYANILK
EKAQAAGLDVHYQVKKDVPTGTCAVLITGTHRSLCANLAAANNFTIDHLE
EPSNKALVDNAQYYYISGFFLTVNPPSIMQVAATAHAKQRPFLMNLSAPF
ISQFYMAPLLAALPYVDIIFGNEAEAQAFAEAQQWPSGDLREIGKRLVAM
EKKNPTRPRIAILTQGCDPVLLIQQDSVQEFPVTKLAVHEIVDTNGAGDA
FVGGFLSQFVQGKSLDVCIRCGNYAAGHIIKNPGCTYSGEPEFVEASFLD
H

BO18003.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
AdenoK-PB 345 CG11255-PB 1..345 1..345 1800 100 Plus
AdenoK-PC 345 CG11255-PC 1..345 1..345 1771 98.6 Plus
AdenoK-PA 345 CG11255-PA 1..345 1..345 1771 98.6 Plus
CG3809-PA 396 CG3809-PA 54..393 7..345 707 44 Plus
Ady43A-PA 366 CG1851-PA 87..363 64..335 267 28 Plus