Clone Sequence Records
BO18007.3prime Sequence
802 bp (752 high quality bases) assembled on 2006-10-13
> BO18007.3prime
ATGGTCTAGAAAGCTTGCGTACAGGATGCCGGGATGGACGGCCCCGCTGC
GCTGGAAGTACACATTCGGATTGCTGCTCAACGTGGGCTCCAGCGTGGTG
TAAAGATTCGTTTCGTCTGGTCGTATAAACATGCCTGGCGCATAGCGCAG
CGTTTTGGCCAACTGCGCCGCTTGTGTCATGGAGCTTAGCGAGTTGCCCA
ACTGCTTGAGGGTCAACGGCGTGAGCGTGGGCGGTGCGGCTTGCTGTGGT
GGCGGTGGTTGCGGTGGCAGTGGTGGTGGTGGTGCGGGAGGATAATAGCA
GAACGGGTGCGGACTCAGGTGTGCTGGAAAATAGTGATACATACGCGTAT
AGCTCGGCGGTGCGGCAGTGACCAGAGCAACCCGATCACCTCCATTGTTG
GCACTGGAGCAGTGTTTGGAGCTGAGTCCCTGGCCCGTGTTGGATGCAGA
GTTGGGCAGTCCGCAGCCGCTCATCACGCCGTACTTGATGGGCTTGAAGT
GGAAGAACGAGGGCGAGTAGCCGGAACCGGCGCGACTCAGGGAACTGAAC
TGCTCCTCGCGGTCCTCCACGTACAGGCCCTCCTTGCCCATGGCCGCCAG
TTGCCTGCCCTTGGGCATGAACATCACCAAGAAGACCGTGGCGGATGTGG
CTACCAGACCGAAGGCCACGCAAGCGTCCTTGTGCCGCTCGGCCACGGCC
AGGCCGCATAGCATCCATCCCAGCCAGATGGGGATGGCTCCTCCGATGGC
CAGCCCAATGTAGGTGGCCTCACGGTAGTTGTCCCTGATGCCGCGCGACT
TG
BO18007.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-PB | 1977 | CG32447-RB | 1191..1974 | 802..19 | 3920 | 100 | Minus |
| CG32447-PA | 2121 | CG32447-RA | 1191..1607 | 802..386 | 2085 | 100 | Minus |
| CG32447-PA | 2121 | CG32447-RA | 1751..2118 | 386..19 | 1840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-RB | 2989 | CG32447-RB | 1403..2186 | 802..19 | 3920 | 100 | Minus |
| CG32447-RD | 4928 | CG32447-RD | 1403..1818 | 802..387 | 2080 | 100 | Minus |
| CG32447-RC | 3800 | CG32447-RC | 1403..1818 | 802..387 | 2080 | 100 | Minus |
| CG32447-RD | 4928 | CG32447-RD | 1818..1934 | 135..19 | 585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21704548..21704963 | 387..802 | 2080 | 100 | Plus |
| 3L | 28110227 | 3L | 21694315..21694568 | 134..387 | 1270 | 100 | Plus |
| 3L | 28110227 | 3L | 21693606..21693724 | 19..137 | 595 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 18:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frogger | 2483 | frogger FROGGER 2483bp | 1177..1239 | 78..138 | 112 | 66.7 | Plus |
BO18007.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:52 Download gff for
BO18007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-PB | 1191..1977 | 16..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:56:21 Download gff for
BO18007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 1403..2186 | 19..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:33:38 Download gff for
BO18007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 1403..2186 | 19..802 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:33:38 Download gff for
BO18007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21693606..21693721 | 19..134 | 100 | <- | Plus |
| 3L | 21694316..21694567 | 135..386 | 100 | <- | Plus |
| 3L | 21704548..21704963 | 387..802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:56:21 Download gff for
BO18007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21686706..21686821 | 19..134 | 100 | <- | Plus |
| arm_3L | 21687416..21687667 | 135..386 | 100 | <- | Plus |
| arm_3L | 21697648..21698063 | 387..802 | 100 | | Plus |
BO18007.5prime Sequence
841 bp (758 high quality bases) assembled on 2006-10-13
> BO18007.5prime
GAAGTTATCAGTCGACATGGCCGGTAGACGCCACCTGCTGCTGATCCTGC
TGCTGATCATGCAGTTGATCGCCACCACGCCGGCGTCGCGCAGCCTCAGC
GTTAATGGCAACAACATTTGGCGGCGGGTGCGCCTGGTGACCAGCCAGGA
ATCGGATCGCAACGCCTACCAGGTGCTTAAGCCGAGTAGCCGTAATGCCA
CCAGCACCACCACTACTACCAGCACGACTACAAGTACTACAAGTAGCACC
ACTAGTACCACTACTCCGGCAGCTCCTCAGACCCAGCGATCTGCCAAACA
ATTGGATCTCAATTTTCCGGGTGGCAATGTCTCCAGTGCTGCCCGTCTCG
AAATGTCGACGGAATTCTTTGTGGTACCCACACTATCGGCCAGCAGTTCT
AGCAGCACCACGTCCACCACCACACCAGCCACGCCCCGTCGGAGTTCAGG
GGCGAAGGCGCGAGCAGCCGGCACCACTGGACGGGTGACTCCCGGGAGCA
GCTCCAACAGCACACCGCCCAGTATAGTGTCCACCCACTTGCCCTTCGCG
GGACTACGCAAGGAGCCGTGGGTGGTGCCGGTGCTAGTCCTGGCCACCCT
CACCATGCTCATGATGGCAGCGTTCGAGATCTTTGTGCTCTTCAAGGCCT
GGCGGACGTCCCCGTCGCGTAGGCACCTCTTTCTGGGCCAGATGCTGCTT
CTCGGTCTGTTCGCCTGCGCTAGTTTGGGGGCCATCATCACCGCACAGCC
CTCGTTGATCAGTTGCGGGGCCATCCGCTTCGGAGTGGGCGTGGCCTACG
CCCTGGTCTTTTGCCGCCTGCTGGTCAAATGCGTATTTCTG
BO18007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-PA | 2121 | CG32447-RA | 1..825 | 17..841 | 4050 | 99.7 | Plus |
| CG32447-PB | 1977 | CG32447-RB | 1..825 | 17..841 | 4050 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-RD | 4928 | CG32447-RD | 213..1037 | 17..841 | 4080 | 99.8 | Plus |
| CG32447-RC | 3800 | CG32447-RC | 213..1037 | 17..841 | 4080 | 99.8 | Plus |
| CG32447-RB | 2989 | CG32447-RB | 213..1037 | 17..841 | 4080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:53:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21705329..21706153 | 841..17 | 4065 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:53:11 has no hits.
BO18007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:53 Download gff for
BO18007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-PB | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:04:03 Download gff for
BO18007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 207..1037 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:15 Download gff for
BO18007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 207..1037 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:15 Download gff for
BO18007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21705329..21706151 | 19..841 | 99 | -> | Minus |
| 3L | 21868224..21868241 | 1..18 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:04:03 Download gff for
BO18007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21698429..21699251 | 19..841 | 99 | -> | Minus |
| arm_3L | 21861324..21861341 | 1..18 | 94 | | Minus |
BO18007.complete Sequence
2008 bp assembled on 2007-03-23
GenBank Submission: FJ634278
> BO18007.complete
GAAGTTATCAGTCGACATGGCCGGTAGACGCCACCTGCTGCTGATCCTGC
TGCTGATCATGCAGTTGATCGCCACCACGCCGGCGTCGCGCAGCCTCAGC
GTTAATGGCAACAACATTTGGCGGCGGGTGCGCCTGGTGACCAGCCAGGA
ATCGGATCGCAACGCCTACCAGGTGCTTAAGCCGAGTAGCCGTAATGCCA
CCAGCACCACCACTACTACCAGCACGACTACAAGTACTACAAGTAGCACC
ACTAGTACCACTACTCCGGCAGCTCCTCAGACCCAGCGATCTGCCAAACA
ATTGGATCTCAATTTTCCGGGTGGCAATGTCTCCAGTGCTGCCCGTCTCG
AAATGTCGACGGAATTCTTTGTGGTACCCACACTATCGGCCAGCAGTTCT
AGCAGCACCACGTCCACCACCACACCAGCCACGCCCCGTCGGAGTTCAGG
GGCGAAGGCGCGAGCAGCCGGCACCACTGGACGGGTGACTCCCGGGAGCA
GCTCCAACAGCACACCGCCCAGTATAGTGTCCACCCACTTGCCCTTCGCG
GGACTACGCAAGGAGCCGTGGGTGGTGCCGGTGCTAGTCCTGGCCACCCT
CACCATGCTCATGATGGCAGCGTTCGAGATCTTTGTGCTCTTCAAGGCCT
GGCGGACGTCCCCGTCGCGTAGGCACCTCTTTCTGGGCCAGATGCTGCTT
CTCGGTCTGTTCGCCTGCGCTAGTTTGGGGGCCATCATCACCGCACAGCC
CTCGTTGATCAGTTGCGGGGCCATCCGCTTCGGAGTGGGCGTGGCCTACG
CCCTGGTCTTTGCCGCCCTGCTGGTCAAATGCGTATTTCTGATTAGTCTA
AATGGAGGGGTGTATCTGCCGGCTCCATACCAGGGATTGCTGCTCCTCTT
TGCGCTGCTCATCCAGGTAGCGATCGGAGGGCAGTGGCTGCTCACCCAAC
CACCGGAGGTATACACCACCAGTGTGCCTGTGATGGGCAGTGGCTTCCTT
AGCACCACGGTGGCCTCACAGACCAACTACTCGGCACTGTTTTACCCCAC
GTCCTACACAACGCTGGACGGGACTCCGGAGATCTACACCCGGATAGCGG
CGGTTAGCACCGTACTAATACCGCTCTGCAAGACGCAGTTCTCGGAGCTG
CTCTTCTCGCTGATCTACATTGTCTTTCTGATCGTCTTCATCGCCGTGCT
AGCCATCAAGTCGCGCGGCATCAGGGACAACTACCGTGAGGCCACCTACA
TTGGGCTGGCCATCGGAGGAGCCATCCCCATCTGGCTGGGATGGATGCTA
TGCGGCCTGGCCGTGGCCGAGCGGCACAAGGACGCTTGCGTGGCCTTCGG
TCTGGTAGCCACATCCGCCACGGTCTTCTTGGTGATGTTCATGCCCAAGG
GCAGGCAACTGGCGGCCATGGGCAAGGAGGGCCTGTACGTGGAGGACCGC
GAGGAGCAGTTCAGTTCCCTGAGTCGCGCCGGTTCCGGCTACTCGCCCTC
GTTCTTCCACTTCAAGCCCATCAAGTACGGCGTGATGAGCGGCTGCGGAC
TGCCCAACTCTGCATCCAACACGGGCCAGGGACTCAGCTCCAAACACTGC
TCCAGTGCCAACAATGGAGGTGATCGGGTTGCTCTGGTCACTGCCGCACC
GCCGAGCTATACGCGTATGTATCACTATTTTCCAGCACACCTGAGTCCGC
ACCCGTTCTGCTATTATCCTCCCGCACCACCACCACCACTGCCACCGCAA
CCACCGCCACCACAGCAAGCCGCACCGCCCACGCTCACGCCGTTGACCCT
CAAGCAGTTGGGCAACTCGCTAAGCTCCATGACACAAGCGGCGCAGTTGG
CCAAAACGCTGCGCTATGCGCCAGGCATGTTTATACGACCAGACGAAACG
AATCTTTACACCACGCTGGAGCCCACGTTGAGCAGCAATCCGAATGTGTA
CTTCCAGCGCAGCGGGGCCGTCCATCCCGGCATCCTGTACGCAAGCTTTC
TAGACCAT
BO18007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-RB | 1977 | CG32447-PB | 1..1974 | 17..1990 | 9870 | 100 | Plus |
| CG32447-RD | 1725 | CG32447-PD | 1..1606 | 17..1622 | 8030 | 100 | Plus |
| CG32447-RC | 1914 | CG32447-PC | 1..1606 | 17..1622 | 8030 | 100 | Plus |
| CG32447-RD | 1725 | CG32447-PD | 1606..1722 | 1874..1990 | 585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-RB | 2989 | CG32447-RB | 213..2186 | 17..1990 | 9870 | 100 | Plus |
| CG32447-RD | 4928 | CG32447-RD | 213..1818 | 17..1622 | 8030 | 100 | Plus |
| CG32447-RC | 3800 | CG32447-RC | 213..1818 | 17..1622 | 8030 | 100 | Plus |
| CG32447-RD | 4928 | CG32447-RD | 1818..1934 | 1874..1990 | 585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21704548..21706153 | 1622..17 | 8030 | 100 | Minus |
| 3L | 28110227 | 3L | 21694315..21694568 | 1875..1622 | 1270 | 100 | Minus |
| 3L | 28110227 | 3L | 21693606..21693724 | 1990..1872 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:06:59 has no hits.
BO18007.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:51 Download gff for
BO18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 1..1977 | 17..1993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:06 Download gff for
BO18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 195..2168 | 17..1992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:03 Download gff for
BO18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 213..2186 | 17..1992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:51 Download gff for
BO18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 189..2168 | 9..1990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:16 Download gff for
BO18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32447-RB | 213..2186 | 17..1992 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:16 Download gff for
BO18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21693603..21693721 | 1875..1992 | 98 | <- | Minus |
| 3L | 21694316..21694567 | 1623..1874 | 100 | <- | Minus |
| 3L | 21704548..21706153 | 17..1622 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:03 Download gff for
BO18007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21686703..21686821 | 1875..1992 | 98 | <- | Minus |
| arm_3L | 21687416..21687667 | 1623..1874 | 100 | <- | Minus |
| arm_3L | 21697648..21699253 | 17..1622 | 100 | | Minus |
BO18007.pep Sequence
Translation from 16 to 2008
> BO18007.pep
MAGRRHLLLILLLIMQLIATTPASRSLSVNGNNIWRRVRLVTSQESDRNA
YQVLKPSSRNATSTTTTTSTTTSTTSSTTSTTTPAAPQTQRSAKQLDLNF
PGGNVSSAARLEMSTEFFVVPTLSASSSSSTTSTTTPATPRRSSGAKARA
AGTTGRVTPGSSSNSTPPSIVSTHLPFAGLRKEPWVVPVLVLATLTMLMM
AAFEIFVLFKAWRTSPSRRHLFLGQMLLLGLFACASLGAIITAQPSLISC
GAIRFGVGVAYALVFAALLVKCVFLISLNGGVYLPAPYQGLLLLFALLIQ
VAIGGQWLLTQPPEVYTTSVPVMGSGFLSTTVASQTNYSALFYPTSYTTL
DGTPEIYTRIAAVSTVLIPLCKTQFSELLFSLIYIVFLIVFIAVLAIKSR
GIRDNYREATYIGLAIGGAIPIWLGWMLCGLAVAERHKDACVAFGLVATS
ATVFLVMFMPKGRQLAAMGKEGLYVEDREEQFSSLSRAGSGYSPSFFHFK
PIKYGVMSGCGLPNSASNTGQGLSSKHCSSANNGGDRVALVTAAPPSYTR
MYHYFPAHLSPHPFCYYPPAPPPPLPPQPPPPQQAAPPTLTPLTLKQLGN
SLSSMTQAAQLAKTLRYAPGMFIRPDETNLYTTLEPTLSSNPNVYFQRSG
AVHPGILYASFLDH
BO18007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32447-PB | 658 | CG32447-PB | 1..658 | 1..658 | 3368 | 100 | Plus |
| CG32447-PC | 637 | CG32447-PC | 1..637 | 1..658 | 3221 | 96.8 | Plus |
| CG32447-PD | 574 | CG32447-PD | 1..562 | 1..567 | 2705 | 95.6 | Plus |
| CG32447-PD | 574 | CG32447-PD | 512..574 | 598..658 | 210 | 69.8 | Plus |
