Clone Sequence Records
BO18008.3prime Sequence
803 bp (675 high quality bases) assembled on 2006-10-13
> BO18008.3prime
ATGGTCTAGAAAGCTTGCATCCTTGAGGATCTCGTTAACGGCGTTGACGA
CGTGACGTGCGGAGATGCCGAACATATCGATGAGTACCGACGGAGGACCC
GAACGTGGCACGGTGGGCACGTACAAGTGCTTGACAACGAAGTTGCGCTC
GCCAGCCAGGGCACTCAGCACAGCTTCACCCAGGCCTCCTTGCTGGTAGT
GATCCTCCACGACGACTACGCGTCCTCCGCACTGCTTGCCGTGCTCGATG
ATCAGCTCGGCGTCCAATGGCTTCACGGTGAACGGATCGATCACACGGAC
GGTGATGCAGTTCTTCTCCAGCTGATCGGCGGCAGCCAGGCACTCGTACA
AAGTGATTCCAGCTCCGATCAGAAGCACCTCGTCGGAGCTCTTTTGGCGC
ACCACCTTGCCGCGGCCAATGGTGAAGGGTTCCTCGTTGTCGTAGATCAC
ACAGGTGTTGGGACGGGACGTACGGATGAAGCAGACACCCTTGGTGTTGG
CGGCCAGTTCGACGGCACGCTCCGTGCTCACTGCATCGGAGGGATAGAAG
ATGGTGCTGCCCGGAATGGTGCGGAACATGGCAATGTCCTCCAGACCCAT
CTGCGAAGGACCATCCTCACCGATACTGCAGCCGCAGTGGGAGCCCACAA
AGTTAACGTTCGTCTGCGAGATGGCGCCCATACGGATCTGATCGAAGGCA
CGGGTGAAGAAGGTGGCAAAGGTGGACACAAAGGCCACAGTGCGGCGACG
GCAGGCGGCTCCCACGGCCACTCCCACAAGATTCTGCTCAGCGATGAAGC
ACT
BO18008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-PB | 1881 | CG8036-RB | 1094..1878 | 803..19 | 3900 | 99.8 | Minus |
| CG8036-PC | 1881 | CG8036-RC | 1094..1878 | 803..19 | 3900 | 99.8 | Minus |
| CG8036-PD | 1743 | CG8036-RD | 956..1740 | 803..19 | 3900 | 99.8 | Minus |
| CG5103-PA | 1872 | CG5103-RA | 1189..1314 | 699..574 | 255 | 88 | Minus |
| CG5103-PA | 1872 | CG5103-RA | 1100..1157 | 788..731 | 140 | 89.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-RD | 2179 | CG8036-RD | 1245..2029 | 803..19 | 3910 | 99.9 | Minus |
| CG8036-RC | 2235 | CG8036-RC | 1301..2085 | 803..19 | 3910 | 99.9 | Minus |
| CG8036-RB | 2493 | CG8036-RB | 1559..2343 | 803..19 | 3910 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8672700..8673314 | 803..189 | 3045 | 99.7 | Minus |
| 3L | 28110227 | 3L | 18292405..18293080 | 128..803 | 1100 | 77.5 | Plus |
| 3R | 32079331 | 3R | 8673378..8673552 | 193..19 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:40:09 has no hits.
BO18008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:53 Download gff for
BO18008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-PD | 956..1743 | 18..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:15 Download gff for
BO18008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 1559..2343 | 19..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:47 Download gff for
BO18008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 1559..2343 | 19..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:47 Download gff for
BO18008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8672700..8673309 | 194..803 | 99 | -> | Minus |
| 3R | 8673378..8673552 | 19..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:15 Download gff for
BO18008.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4498422..4499031 | 194..803 | 99 | -> | Minus |
| arm_3R | 4499100..4499274 | 19..193 | 100 | | Minus |
BO18008.5prime Sequence
823 bp (790 high quality bases) assembled on 2006-10-13
> BO18008.5prime
GAAGTTATCAGTCGACATGTCGTACCACAAGCCCGAAGCTAAGACCGTCC
AGGATCTGAAAGATCTGGCCCAGAAACTGCGAATTCACTCTATCAACGCC
ACCCAGGCCTCCAAATCGGGCCATCCCACATCATGTGCCTCGATCGCTGA
GATCATGTCCGTGCTGTTCTTCCAGCAGCTGCGCCTGAACCTGAAGCACC
CACGCGATCCCTCCAGCGATCGCTTCATCCTGTCCAAAGGACACGCTGCT
CCCATTCTGTATGCCGCCTGGGCTGAGGCTGGTCTCTTCCCCATCGCGGA
TCTGAACAACCTGCGCAAGATCGACAGCGATCTGGAGGGTCACCCGACGC
CTCGTCTGAACTTCATCGATGTGGGCACTGGATCCCTGGGACAGGGTGTC
GCCGTCGGCGCTGGCATGGCCTATGTGGGCAAGAACTTCGACAAGGCCGA
CTACCGCACCTACGTGGTGGTGGGTGATGGTGAGTCCGCCGAGGGTTCCA
TCTGGGAGTCGCTGCACTTTGCCGGCCACTATAAACTGGACAACCTTTGC
GTGATCTTTGATGTGAACCGCTTGGGCCAGTCGGAGGCCACCTCCCTGCA
GCATAAGCTGGATGTTTACCGTGATCGTCTGGAGGCCTTCGGCTTTAATG
CCGTCGTTGTCGATGGTCATGATGTCGAGGAATTGAGCAAGGCTTTCCAT
TGTGCTGCAATCACCAAGAACAAGCCCACCGCCATCATTGCAAAGACGTT
CAAGGGCAGGGACTTCCCCAACATCGAGGATTTGGACAACTGGCACGGCA
AGCCACTGGGCGAACAGGCCGCC
BO18008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-PB | 1881 | CG8036-RB | 1..797 | 17..813 | 3985 | 100 | Plus |
| CG8036-PC | 1881 | CG8036-RC | 1..797 | 17..813 | 3985 | 100 | Plus |
| CG8036-PD | 1743 | CG8036-RD | 1..659 | 155..813 | 3295 | 100 | Plus |
| CG5103-PA | 1872 | CG5103-RA | 145..206 | 161..222 | 135 | 88.7 | Plus |
| CG5103-PA | 1872 | CG5103-RA | 214..275 | 230..291 | 135 | 88.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-RC | 2235 | CG8036-RC | 208..1014 | 17..823 | 4005 | 99.8 | Plus |
| CG8036-RB | 2493 | CG8036-RB | 466..1272 | 17..823 | 4005 | 99.8 | Plus |
| CG8036-RD | 2179 | CG8036-RD | 256..958 | 121..823 | 3485 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8671710..8672413 | 120..823 | 3490 | 99.7 | Plus |
| 3L | 28110227 | 3L | 18293677..18294199 | 568..46 | 1010 | 79.5 | Minus |
| 3R | 32079331 | 3R | 8669825..8669928 | 17..120 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:11:53 has no hits.
BO18008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:54 Download gff for
BO18008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-PC | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:06 Download gff for
BO18008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..1272 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:29 Download gff for
BO18008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..1272 | 17..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:29 Download gff for
BO18008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8669825..8669928 | 17..120 | 100 | -> | Plus |
| 3R | 8671711..8672413 | 121..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:06 Download gff for
BO18008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4495547..4495650 | 17..120 | 100 | -> | Plus |
| arm_3R | 4497433..4498135 | 121..823 | 99 | | Plus |
BO18008.complete Sequence
1912 bp assembled on 2007-03-23
GenBank Submission: FJ638760
> BO18008.complete
GAAGTTATCAGTCGACATGTCGTACCACAAGCCCGAAGCTAAGACCGTCC
AGGATCTGAAAGATCTGGCCCAGAAACTGCGAATTCACTCTATCAACGCC
ACCCAGGCCTCCAAATCGGGCCATCCCACATCATGTGCCTCGATCGCTGA
GATCATGTCCGTGCTGTTCTTCCAGCAGCTGCGCCTGAACCTGAAGCACC
CACGCGATCCCTCCAGCGATCGCTTCATCCTGTCCAAAGGACACGCTGCT
CCCATTCTGTATGCCGCCTGGGCTGAGGCTGGTCTCTTCCCCATCGCGGA
TCTGAACAACCTGCGCAAGATCGACAGCGATCTGGAGGGTCACCCGACGC
CTCGTCTGAACTTCATCGATGTGGGCACTGGATCCCTGGGACAGGGTGTC
GCCGTCGGCGCTGGCATGGCCTATGTGGGCAAGAACTTCGACAAGGCCGA
CTACCGCACCTACGTGGTGGTGGGTGATGGTGAGTCCGCCGAGGGTTCCA
TCTGGGAGTCGCTGCACTTTGCCGGCCACTATAAACTGGACAACCTTTGC
GTGATCTTTGATGTGAACCGCTTGGGCCAGTCGGAGGCCACCTCCCTGCA
GCATAAGCTGGATGTTTACCGTGATCGTCTGGAGGCCTTCGGCTTTAATG
CCGTCGTTGTCGATGGTCATGATGTCGAGGAATTGAGCAAGGCTTTCCAT
TGTGCTGCAATCACCAAGAACAAGCCCACCGCCATCATTGCAAAGACGTT
CAAGGGCAGGGACTTCCCCAACATCGAGGATTTGGACAACTGGCACGGCA
AGCCACTGGGCGACAAGGCCGCCGAAGTGGTGAAGCATCTGGAGGGACTG
ATTGTCAACAAGAACGTCAAGCTGACCCCTAAGCCGGTGCCCAAGACTGG
TGCTGCTCCCGACGTGGACATCAACAACATTAAGTTGAGCTCGCCACCCG
CCTACAAGCTGGGTGATTCCATTGCCACCCGTTTGGCCTATGGAACAGCT
CTGGCCAAGATTGGCCAGAACAACCTGCGTGTTGTTGCCCTAGACGGAGA
CACCAAGAACTCAACTTTCTCCGACAAGCTGAAGAACCTCGACCCGCAGC
GCTACATTGAGTGCTTCATCGCTGAGCAGAATCTTGTGGGAGTGGCCGTT
GGAGCCGCCTGCCGTCGCCGCACTGTGGCCTTTGTGTCCACCTTTGCCAC
CTTCTTCACCCGTGCCTTCGATCAGATCCGTATGGGCGCCATCTCGCAGA
CGAACGTTAACTTTGTGGGCTCCCACTGCGGCTGCAGTATCGGTGAGGAT
GGTCCTTCGCAGATGGGTCTGGAGGACATTGCCATGTTCCGCACCATTCC
GGGCAGCACCATCTTCTATCCCTCCGATGCAGTGAGCACGGAGCGTGCCG
TCGAACTGGCCGCCAACACCAAGGGTGTCTGCTTCATCCGTACGTCCCGT
CCCAACACCTGTGTGATCTACGACAACGAGGAACCCTTCACCATTGGCCG
CGGCAAGGTGGTGCGCCAAAAGAGCTCCGACGAGGTGCTTCTGATCGGAG
CTGGAATCACTTTGTACGAGTGCCTGGCTGCCGCCGATCAGCTGGAGAAG
AACTGCATCACCGTCCGTGTGATCGATCCGTTCACCGTGAAGCCATTGGA
CGCCGAGCTGATCATCGAGCACGGCAAGCAGTGCGGAGGACGCGTAGTCG
TCGTGGAGGATCACTACCAGCAAGGAGGCCTGGGTGAAGCTGTGCTGAGT
GCCCTGGCTGGCGAGCGCAACTTCGTTGTCAAGCACTTGTACGTGCCCAC
CGTGCCACGTTCGGGTCCTCCGTCGGTACTCATCGATATGTTCGGCATCT
CCGCACGTCACGTCGTCAACGCCGTTAACGAGATCCTCAAGGATGCAAGC
TTTCTAGACCAT
BO18008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-RC | 1881 | CG8036-PC | 1..1878 | 17..1894 | 9390 | 100 | Plus |
| CG8036-RB | 1881 | CG8036-PB | 1..1878 | 17..1894 | 9390 | 100 | Plus |
| CG8036-RD | 1743 | CG8036-PD | 1..1740 | 155..1894 | 8700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-RC | 2235 | CG8036-RC | 208..2085 | 17..1894 | 9390 | 100 | Plus |
| CG8036-RB | 2493 | CG8036-RB | 466..2343 | 17..1894 | 9390 | 100 | Plus |
| CG8036-RD | 2179 | CG8036-RD | 256..2029 | 121..1894 | 8870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8671710..8673314 | 120..1724 | 8010 | 99.9 | Plus |
| 3L | 28110227 | 3L | 18292405..18293092 | 1785..1098 | 1100 | 77.3 | Minus |
| 3L | 28110227 | 3L | 18293677..18294199 | 568..46 | 1010 | 79.5 | Minus |
| 3R | 32079331 | 3R | 8673378..8673552 | 1720..1894 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 8669825..8669928 | 17..120 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:45:30 has no hits.
BO18008.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:37 Download gff for
BO18008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RC | 1..1881 | 17..1895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:48 Download gff for
BO18008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RC | 194..2071 | 17..1894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:46 Download gff for
BO18008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..2343 | 17..1896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:37 Download gff for
BO18008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RC | 194..2071 | 17..1894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:46 Download gff for
BO18008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..2343 | 17..1896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:46 Download gff for
BO18008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8669825..8669928 | 17..120 | 100 | -> | Plus |
| 3R | 8671711..8673309 | 121..1719 | 100 | -> | Plus |
| 3R | 8673378..8673552 | 1720..1896 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:46 Download gff for
BO18008.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4495547..4495650 | 17..120 | 100 | -> | Plus |
| arm_3R | 4497433..4499031 | 121..1719 | 100 | -> | Plus |
| arm_3R | 4499100..4499274 | 1720..1896 | 98 | | Plus |
BO18008.pep Sequence
Translation from 16 to 1912
> BO18008.pep
MSYHKPEAKTVQDLKDLAQKLRIHSINATQASKSGHPTSCASIAEIMSVL
FFQQLRLNLKHPRDPSSDRFILSKGHAAPILYAAWAEAGLFPIADLNNLR
KIDSDLEGHPTPRLNFIDVGTGSLGQGVAVGAGMAYVGKNFDKADYRTYV
VVGDGESAEGSIWESLHFAGHYKLDNLCVIFDVNRLGQSEATSLQHKLDV
YRDRLEAFGFNAVVVDGHDVEELSKAFHCAAITKNKPTAIIAKTFKGRDF
PNIEDLDNWHGKPLGDKAAEVVKHLEGLIVNKNVKLTPKPVPKTGAAPDV
DINNIKLSSPPAYKLGDSIATRLAYGTALAKIGQNNLRVVALDGDTKNST
FSDKLKNLDPQRYIECFIAEQNLVGVAVGAACRRRTVAFVSTFATFFTRA
FDQIRMGAISQTNVNFVGSHCGCSIGEDGPSQMGLEDIAMFRTIPGSTIF
YPSDAVSTERAVELAANTKGVCFIRTSRPNTCVIYDNEEPFTIGRGKVVR
QKSSDEVLLIGAGITLYECLAAADQLEKNCITVRVIDPFTVKPLDAELII
EHGKQCGGRVVVVEDHYQQGGLGEAVLSALAGERNFVVKHLYVPTVPRSG
PPSVLIDMFGISARHVVNAVNEILKDASFLDH
BO18008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-PC | 626 | CG8036-PC | 1..626 | 1..626 | 3242 | 100 | Plus |
| CG8036-PB | 626 | CG8036-PB | 1..626 | 1..626 | 3242 | 100 | Plus |
| CG8036-PD | 580 | CG8036-PD | 1..580 | 47..626 | 3009 | 100 | Plus |
| CG5103-PA | 623 | CG5103-PA | 1..622 | 1..625 | 2463 | 73.6 | Plus |
