Clone Sequence Records
BO18010.3prime Sequence
272 bp (272 high quality bases) assembled on 2006-10-13
> BO18010.3prime
ATGGTCTAGAAAGCTTGCTCGCGGATGCATTGGAGGTCCTGGGGCCACGT
ATCCTGGACCATATGGATACGGACCATGCGGCGGCGGAGGATTGTAGCCG
GAGCTGTTTCCGTGAGGAGGTTCGTGGTAAATCGGATGCACTGGCGTGTG
GAACGGGGGCTGTGGTTCATGGTGCGGAGGTCCATGGTGCGGTGGTCCGT
GGGGCGGTGGCCCATGAGGCGGCGGGTTGTGGTGGTGGTGCGGTGGTGGA
GGAGGCATGTCGACTGATAACT
BO18010.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5011-PA | 243 | CG5011-RA | 1..240 | 258..19 | 1200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5011-RB | 550 | CG5011-RB | 190..429 | 258..19 | 1200 | 100 | Minus |
CG5011-RA | 443 | CG5011-RA | 83..322 | 258..19 | 1200 | 100 | Minus |
CG43349-RB | 459 | CG43349-RB | 141..193 | 222..170 | 190 | 90.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1200860..1201099 | 258..19 | 1200 | 100 | Minus |
2L | 23513712 | 2L | 1200345..1200397 | 222..170 | 190 | 90.6 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:33:12 has no hits.
BO18010.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:57 Download gff for
BO18010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-PA | 1..243 | 15..258 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:49 Download gff for
BO18010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 76..326 | 14..265 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:23 Download gff for
BO18010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 76..326 | 14..265 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:23 Download gff for
BO18010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1200860..1201103 | 14..258 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:49 Download gff for
BO18010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1200860..1201103 | 14..258 | 99 | | Minus |
BO18010.5prime Sequence
272 bp (272 high quality bases) assembled on 2006-10-13
> BO18010.5prime
GAAGTTATCAGTCGACATGCCTCCTCCACCACCGCACCACCACCACAACC
CGCCGCCTCATGGGCCACCGCCCCACGGACCACCGCACCATGGACCTCCG
CACCATGAACCACAGCCCCCGTTCCACACGCCAGTGCATCCGATTTACCA
CGAACCTCCTCACGGAAACAGCTCCGGCTACAATCCTCCGCCGCCGCATG
GTCCGTATCCATATGGTCCAGGATACGTGGCCCCAGGACCTCCAATGCAT
CCGCGAGCAAGCTTTCTAGACC
BO18010.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5011-PA | 243 | CG5011-RA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5011-RB | 550 | CG5011-RB | 190..429 | 17..256 | 1200 | 100 | Plus |
CG5011-RA | 443 | CG5011-RA | 83..322 | 17..256 | 1200 | 100 | Plus |
CG43349-RB | 459 | CG43349-RB | 141..193 | 53..105 | 190 | 90.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1200860..1201099 | 17..256 | 1200 | 100 | Plus |
2L | 23513712 | 2L | 1200345..1200397 | 53..105 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:05:52 has no hits.
BO18010.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:57 Download gff for
BO18010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-PA | 1..243 | 17..260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:54 Download gff for
BO18010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 76..326 | 10..261 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:31 Download gff for
BO18010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 76..326 | 10..261 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:31 Download gff for
BO18010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1200860..1201103 | 17..261 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:54 Download gff for
BO18010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1200860..1201103 | 17..261 | 99 | | Plus |
BO18010.complete Sequence
274 bp assembled on 2006-10-11
GenBank Submission: FJ634279
> BO18010.complete
GAAGTTATCAGTCGACATGCCTCCTCCACCACCGCACCACCACCACAACC
CGCCGCCTCATGGGCCACCGCCCCACGGACCACCGCACCATGGACCTCCG
CACCATGAACCACAGCCCCCGTTCCACACGCCAGTGCATCCGATTTACCA
CGAACCTCCTCACGGAAACAGCTCCGGCTACAATCCTCCGCCGCCGCATG
GTCCGTATCCATATGGTCCAGGATACGTGGCCCCAGGACCTCCAATGCAT
CCGCGAGCAAGCTTTCTAGACCAT
BO18010.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5011-RB | 243 | CG5011-PB | 1..240 | 17..256 | 1200 | 100 | Plus |
CG5011-RA | 243 | CG5011-PA | 1..240 | 17..256 | 1200 | 100 | Plus |
CG43349-RB | 213 | CG43349-PB | 106..158 | 53..105 | 190 | 90.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5011-RB | 550 | CG5011-RB | 190..429 | 17..256 | 1200 | 100 | Plus |
CG5011-RA | 443 | CG5011-RA | 83..322 | 17..256 | 1200 | 100 | Plus |
CG43349-RB | 459 | CG43349-RB | 141..193 | 53..105 | 190 | 90.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1200860..1201099 | 17..256 | 1200 | 100 | Plus |
2L | 23513712 | 2L | 1200345..1200397 | 53..105 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:03:49 has no hits.
BO18010.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:30 Download gff for
BO18010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 1..243 | 17..260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:05 Download gff for
BO18010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 617..867 | 10..261 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:55 Download gff for
BO18010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 83..322 | 17..258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:30 Download gff for
BO18010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 617..867 | 10..261 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:35 Download gff for
BO18010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5011-RA | 83..322 | 17..258 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:35 Download gff for
BO18010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1200860..1201099 | 17..258 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:55 Download gff for
BO18010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1200860..1201099 | 17..258 | 99 | | Plus |
BO18010.pep Sequence
Translation from 16 to 274
> BO18010.pep
MPPPPPHHHHNPPPHGPPPHGPPHHGPPHHEPQPPFHTPVHPIYHEPPHG
NSSGYNPPPPHGPYPYGPGYVAPGPPMHPRASFLDH
BO18010.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5011-PB | 80 | CG5011-PB | 1..80 | 1..80 | 531 | 100 | Plus |
CG5011-PA | 80 | CG5011-PA | 1..80 | 1..80 | 531 | 100 | Plus |
CG43349-PB | 70 | CG43349-PB | 1..70 | 1..80 | 242 | 56.6 | Plus |
CG43349-PA | 70 | CG43349-PA | 1..70 | 1..80 | 242 | 56.6 | Plus |
CG13482-PA | 102 | CG13482-PA | 31..96 | 2..62 | 151 | 44.9 | Plus |