Clone Sequence Records
BO18011.3prime Sequence
806 bp (806 high quality bases) assembled on 2006-10-13
> BO18011.3prime
ATGGTCTAGAAAGCTTGCGGCGATCGTACATCCATTCATGGTGGTGCGGA
TCCAATCGTGGTAGAAGGCAGTACGCGCATACACATCCGGATAGCCACGT
CCGCATGGCACACCCCAATTACCGATGCCTACCAAGCGCTGCTGCTCATC
GATAAGCGGTCCGCCAGTGTCGCCATGGCAGGCGCCCTGGCCCGCGTCCA
TTTGGACACACACATGACCCAGGTCCACATCATCTTGGTTCTGCAACTTC
TCCCGGCATGCGTCCACCGGCAGATATGTGCCGGATGCCTCCTGCAGATA
GCGACCATAGGTGCCCATGGCCTCGGAGCTGCCCCAACCGGCAAAGGTCA
ACTTATCCCCCTCTTCCAATTCATCGATATCCGCCAAGGTTATATTCTTT
GTCACATCGTTGAACTCGATTTTGGACGACAACTGCAGCAGGGCTATGTC
ATTGTGATACAGCGGCTTGTCGAAGTTGCAGTGCACATGGATCTGGCTCA
CAGTGTAGTACGGAGCATACAGATCCCACCAGTCCACAGTTCCAGTCACA
ACCAGCAGATTTAATGGCCTCAATCCCGCCACGCAACTGGCCGCTGTGAG
CACCCAAGTTTCGTCGAGTATGATGGCTCCGCACAAGTGATACGAGTATG
CATTTTGGATACTTGCTATCCAGGGCCAGTTGCCCTCGGCGGCGGTGGTG
CCACCGATCACACGACCTTGGGGCACAGCTTCGGTGGAGCGATGCCTCTC
GATATTGGCCAAACCCGGAAGTGGTTCTCCTCGCATCCTCATGTCGACTG
ATAACT
BO18011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-PA | 777 | CG31266-RA | 1..774 | 792..19 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-RB | 993 | CG31266-RB | 95..869 | 793..19 | 3875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17132756..17133462 | 793..87 | 3535 | 100 | Minus |
3R | 32079331 | 3R | 17133526..17133595 | 88..19 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:17:25 has no hits.
BO18011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:59 Download gff for
BO18011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-PA | 1..777 | 18..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:07 Download gff for
BO18011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 92..869 | 19..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:14 Download gff for
BO18011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 92..869 | 19..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:14 Download gff for
BO18011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17132753..17133461 | 88..799 | 99 | -> | Minus |
3R | 17133527..17133595 | 19..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:07 Download gff for
BO18011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12958475..12959183 | 88..799 | 99 | -> | Minus |
arm_3R | 12959249..12959317 | 19..87 | 100 | | Minus |
BO18011.5prime Sequence
806 bp (806 high quality bases) assembled on 2006-10-13
> BO18011.5prime
GAAGTTATCAGTCGACATGAGGATGCGAGGAGAACCACTTCCGGGTTTGG
CCAATATCGAGAGGCATCGCTCCACCGAAGCTGTGCCCCAAGGTCGTGTG
ATCGGTGGCACCACCGCCGCCGAGGGCAACTGGCCCTGGATAGCAAGTAT
CCAAAATGCATACTCGTATCACTTGTGCGGAGCCATCATACTCGACGAAA
CTTGGGTGCTCACAGCGGCCAGTTGCGTGGCGGGATTGAGGCCATTAAAT
CTGCTGGTTGTGACTGGAACTGTGGACTGGTGGGATCTGTATGCTCCGTA
CTACACTGTGAGCCAGATCCATGTGCACTGCAACTTCGACAAGCCGCTGT
ATCACAATGACATAGCCCTGCTGCAGTTGTCGTCCAAAATCGAGTTCAAC
GATGTGACAAAGAATATAACCTTGGCGGATATCGATGAATTGGAAGAGGG
GGATAAGTTGACCTTTGCCGGTTGGGGCAGCTCCGAGGCCATGGGCACCT
ATGGTCGCTATCTGCAGGAGGCATCCGGCACATATCTGCCGGTGGACGCA
TGCCGGGAGAAGTTGCAGAACCAAGATGATGTGGACCTGGGTCATGTGTG
TGTCCAAATGGACGCGGGCCAGGGCGCCTGCCATGGCGACACTGGCGGAC
CGCTTATCGATGAGCAGCAGCGCTTGGTAGGCATCGGTAATTGGGGTGTG
CCATGCGGACGTGGCTATCCGGATGTGTATGCGCGTACTGCCTTCTACCA
CGATTGGATCCGCACCACCATGAATGGATGTACGATCGCCGCAAGCTTTC
TAGACC
BO18011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-PA | 777 | CG31266-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-RB | 993 | CG31266-RB | 95..869 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17132756..17133462 | 16..722 | 3535 | 100 | Plus |
3R | 32079331 | 3R | 17133526..17133595 | 721..790 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:17:54 has no hits.
BO18011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:59 Download gff for
BO18011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-PA | 1..777 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:11 Download gff for
BO18011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 92..869 | 10..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:18 Download gff for
BO18011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 92..869 | 10..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:18 Download gff for
BO18011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17132753..17133461 | 10..721 | 99 | -> | Plus |
3R | 17133527..17133595 | 722..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:11 Download gff for
BO18011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12958475..12959183 | 10..721 | 99 | -> | Plus |
arm_3R | 12959249..12959317 | 722..790 | 100 | | Plus |
BO18011.complete Sequence
808 bp assembled on 2006-10-11
GenBank Submission: FJ634280
> BO18011.complete
GAAGTTATCAGTCGACATGAGGATGCGAGGAGAACCACTTCCGGGTTTGG
CCAATATCGAGAGGCATCGCTCCACCGAAGCTGTGCCCCAAGGTCGTGTG
ATCGGTGGCACCACCGCCGCCGAGGGCAACTGGCCCTGGATAGCAAGTAT
CCAAAATGCATACTCGTATCACTTGTGCGGAGCCATCATACTCGACGAAA
CTTGGGTGCTCACAGCGGCCAGTTGCGTGGCGGGATTGAGGCCATTAAAT
CTGCTGGTTGTGACTGGAACTGTGGACTGGTGGGATCTGTATGCTCCGTA
CTACACTGTGAGCCAGATCCATGTGCACTGCAACTTCGACAAGCCGCTGT
ATCACAATGACATAGCCCTGCTGCAGTTGTCGTCCAAAATCGAGTTCAAC
GATGTGACAAAGAATATAACCTTGGCGGATATCGATGAATTGGAAGAGGG
GGATAAGTTGACCTTTGCCGGTTGGGGCAGCTCCGAGGCCATGGGCACCT
ATGGTCGCTATCTGCAGGAGGCATCCGGCACATATCTGCCGGTGGACGCA
TGCCGGGAGAAGTTGCAGAACCAAGATGATGTGGACCTGGGTCATGTGTG
TGTCCAAATGGACGCGGGCCAGGGCGCCTGCCATGGCGACACTGGCGGAC
CGCTTATCGATGAGCAGCAGCGCTTGGTAGGCATCGGTAATTGGGGTGTG
CCATGCGGACGTGGCTATCCGGATGTGTATGCGCGTACTGCCTTCTACCA
CGATTGGATCCGCACCACCATGAATGGATGTACGATCGCCGCAAGCTTTC
TAGACCAT
BO18011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-RB | 849 | CG31266-PB | 72..846 | 16..790 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-RB | 993 | CG31266-RB | 95..869 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17132756..17133462 | 16..722 | 3535 | 100 | Plus |
3R | 32079331 | 3R | 17133526..17133595 | 721..790 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:45:08 has no hits.
BO18011.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:13 Download gff for
BO18011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RA | 1..777 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:43 Download gff for
BO18011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 1500..2277 | 10..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:51 Download gff for
BO18011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 96..869 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:13 Download gff for
BO18011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RA | 60..837 | 10..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:38 Download gff for
BO18011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31266-RB | 96..869 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:38 Download gff for
BO18011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17132757..17133461 | 17..721 | 100 | -> | Plus |
3R | 17133527..17133595 | 722..792 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:51 Download gff for
BO18011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12958479..12959183 | 17..721 | 100 | -> | Plus |
arm_3R | 12959249..12959317 | 722..792 | 97 | | Plus |
BO18011.pep Sequence
Translation from 16 to 808
> BO18011.pep
MRMRGEPLPGLANIERHRSTEAVPQGRVIGGTTAAEGNWPWIASIQNAYS
YHLCGAIILDETWVLTAASCVAGLRPLNLLVVTGTVDWWDLYAPYYTVSQ
IHVHCNFDKPLYHNDIALLQLSSKIEFNDVTKNITLADIDELEEGDKLTF
AGWGSSEAMGTYGRYLQEASGTYLPVDACREKLQNQDDVDLGHVCVQMDA
GQGACHGDTGGPLIDEQQRLVGIGNWGVPCGRGYPDVYARTAFYHDWIRT
TMNGCTIAASFLDH
BO18011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31266-PB | 282 | CG31266-PB | 25..282 | 1..258 | 1413 | 100 | Plus |
CG31267-PA | 275 | CG31267-PA | 44..275 | 27..258 | 637 | 47.4 | Plus |
CG5246-PA | 272 | CG5246-PA | 31..265 | 17..252 | 527 | 43.7 | Plus |
CG31265-PA | 266 | CG31265-PA | 35..260 | 26..254 | 489 | 41.9 | Plus |
CG31269-PB | 273 | CG31269-PB | 37..268 | 27..261 | 482 | 43 | Plus |