Clone BO18011 Report

Search the DGRC for BO18011

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:11
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO18011.pep: validated full length
Sequenced Size:808

Clone Sequence Records

BO18011.3prime Sequence

806 bp (806 high quality bases) assembled on 2006-10-13

> BO18011.3prime
ATGGTCTAGAAAGCTTGCGGCGATCGTACATCCATTCATGGTGGTGCGGA
TCCAATCGTGGTAGAAGGCAGTACGCGCATACACATCCGGATAGCCACGT
CCGCATGGCACACCCCAATTACCGATGCCTACCAAGCGCTGCTGCTCATC
GATAAGCGGTCCGCCAGTGTCGCCATGGCAGGCGCCCTGGCCCGCGTCCA
TTTGGACACACACATGACCCAGGTCCACATCATCTTGGTTCTGCAACTTC
TCCCGGCATGCGTCCACCGGCAGATATGTGCCGGATGCCTCCTGCAGATA
GCGACCATAGGTGCCCATGGCCTCGGAGCTGCCCCAACCGGCAAAGGTCA
ACTTATCCCCCTCTTCCAATTCATCGATATCCGCCAAGGTTATATTCTTT
GTCACATCGTTGAACTCGATTTTGGACGACAACTGCAGCAGGGCTATGTC
ATTGTGATACAGCGGCTTGTCGAAGTTGCAGTGCACATGGATCTGGCTCA
CAGTGTAGTACGGAGCATACAGATCCCACCAGTCCACAGTTCCAGTCACA
ACCAGCAGATTTAATGGCCTCAATCCCGCCACGCAACTGGCCGCTGTGAG
CACCCAAGTTTCGTCGAGTATGATGGCTCCGCACAAGTGATACGAGTATG
CATTTTGGATACTTGCTATCCAGGGCCAGTTGCCCTCGGCGGCGGTGGTG
CCACCGATCACACGACCTTGGGGCACAGCTTCGGTGGAGCGATGCCTCTC
GATATTGGCCAAACCCGGAAGTGGTTCTCCTCGCATCCTCATGTCGACTG
ATAACT

BO18011.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-PA 777 CG31266-RA 1..774 792..19 3870 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-RB 993 CG31266-RB 95..869 793..19 3875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17132756..17133462 793..87 3535 100 Minus
3R 32079331 3R 17133526..17133595 88..19 350 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:17:25 has no hits.

BO18011.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:59 Download gff for BO18011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-PA 1..777 18..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:07 Download gff for BO18011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 92..869 19..799 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:14 Download gff for BO18011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 92..869 19..799 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:14 Download gff for BO18011.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17132753..17133461 88..799 99 -> Minus
3R 17133527..17133595 19..87 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:07 Download gff for BO18011.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12958475..12959183 88..799 99 -> Minus
arm_3R 12959249..12959317 19..87 100   Minus

BO18011.5prime Sequence

806 bp (806 high quality bases) assembled on 2006-10-13

> BO18011.5prime
GAAGTTATCAGTCGACATGAGGATGCGAGGAGAACCACTTCCGGGTTTGG
CCAATATCGAGAGGCATCGCTCCACCGAAGCTGTGCCCCAAGGTCGTGTG
ATCGGTGGCACCACCGCCGCCGAGGGCAACTGGCCCTGGATAGCAAGTAT
CCAAAATGCATACTCGTATCACTTGTGCGGAGCCATCATACTCGACGAAA
CTTGGGTGCTCACAGCGGCCAGTTGCGTGGCGGGATTGAGGCCATTAAAT
CTGCTGGTTGTGACTGGAACTGTGGACTGGTGGGATCTGTATGCTCCGTA
CTACACTGTGAGCCAGATCCATGTGCACTGCAACTTCGACAAGCCGCTGT
ATCACAATGACATAGCCCTGCTGCAGTTGTCGTCCAAAATCGAGTTCAAC
GATGTGACAAAGAATATAACCTTGGCGGATATCGATGAATTGGAAGAGGG
GGATAAGTTGACCTTTGCCGGTTGGGGCAGCTCCGAGGCCATGGGCACCT
ATGGTCGCTATCTGCAGGAGGCATCCGGCACATATCTGCCGGTGGACGCA
TGCCGGGAGAAGTTGCAGAACCAAGATGATGTGGACCTGGGTCATGTGTG
TGTCCAAATGGACGCGGGCCAGGGCGCCTGCCATGGCGACACTGGCGGAC
CGCTTATCGATGAGCAGCAGCGCTTGGTAGGCATCGGTAATTGGGGTGTG
CCATGCGGACGTGGCTATCCGGATGTGTATGCGCGTACTGCCTTCTACCA
CGATTGGATCCGCACCACCATGAATGGATGTACGATCGCCGCAAGCTTTC
TAGACC

BO18011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-PA 777 CG31266-RA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-RB 993 CG31266-RB 95..869 16..790 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17132756..17133462 16..722 3535 100 Plus
3R 32079331 3R 17133526..17133595 721..790 350 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:17:54 has no hits.

BO18011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:16:59 Download gff for BO18011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-PA 1..777 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:11 Download gff for BO18011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 92..869 10..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:18 Download gff for BO18011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 92..869 10..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:18 Download gff for BO18011.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17132753..17133461 10..721 99 -> Plus
3R 17133527..17133595 722..790 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:11 Download gff for BO18011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12958475..12959183 10..721 99 -> Plus
arm_3R 12959249..12959317 722..790 100   Plus

BO18011.complete Sequence

808 bp assembled on 2006-10-11

GenBank Submission: FJ634280

> BO18011.complete
GAAGTTATCAGTCGACATGAGGATGCGAGGAGAACCACTTCCGGGTTTGG
CCAATATCGAGAGGCATCGCTCCACCGAAGCTGTGCCCCAAGGTCGTGTG
ATCGGTGGCACCACCGCCGCCGAGGGCAACTGGCCCTGGATAGCAAGTAT
CCAAAATGCATACTCGTATCACTTGTGCGGAGCCATCATACTCGACGAAA
CTTGGGTGCTCACAGCGGCCAGTTGCGTGGCGGGATTGAGGCCATTAAAT
CTGCTGGTTGTGACTGGAACTGTGGACTGGTGGGATCTGTATGCTCCGTA
CTACACTGTGAGCCAGATCCATGTGCACTGCAACTTCGACAAGCCGCTGT
ATCACAATGACATAGCCCTGCTGCAGTTGTCGTCCAAAATCGAGTTCAAC
GATGTGACAAAGAATATAACCTTGGCGGATATCGATGAATTGGAAGAGGG
GGATAAGTTGACCTTTGCCGGTTGGGGCAGCTCCGAGGCCATGGGCACCT
ATGGTCGCTATCTGCAGGAGGCATCCGGCACATATCTGCCGGTGGACGCA
TGCCGGGAGAAGTTGCAGAACCAAGATGATGTGGACCTGGGTCATGTGTG
TGTCCAAATGGACGCGGGCCAGGGCGCCTGCCATGGCGACACTGGCGGAC
CGCTTATCGATGAGCAGCAGCGCTTGGTAGGCATCGGTAATTGGGGTGTG
CCATGCGGACGTGGCTATCCGGATGTGTATGCGCGTACTGCCTTCTACCA
CGATTGGATCCGCACCACCATGAATGGATGTACGATCGCCGCAAGCTTTC
TAGACCAT

BO18011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-RB 849 CG31266-PB 72..846 16..790 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-RB 993 CG31266-RB 95..869 16..790 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17132756..17133462 16..722 3535 100 Plus
3R 32079331 3R 17133526..17133595 721..790 350 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:45:08 has no hits.

BO18011.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:13 Download gff for BO18011.complete
Subject Subject Range Query Range Percent Splice Strand
CG31266-RA 1..777 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:43 Download gff for BO18011.complete
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 1500..2277 10..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:51 Download gff for BO18011.complete
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 96..869 17..792 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:13 Download gff for BO18011.complete
Subject Subject Range Query Range Percent Splice Strand
CG31266-RA 60..837 10..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:38 Download gff for BO18011.complete
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 96..869 17..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:38 Download gff for BO18011.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17132757..17133461 17..721 100 -> Plus
3R 17133527..17133595 722..792 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:51 Download gff for BO18011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12958479..12959183 17..721 100 -> Plus
arm_3R 12959249..12959317 722..792 97   Plus

BO18011.pep Sequence

Translation from 16 to 808

> BO18011.pep
MRMRGEPLPGLANIERHRSTEAVPQGRVIGGTTAAEGNWPWIASIQNAYS
YHLCGAIILDETWVLTAASCVAGLRPLNLLVVTGTVDWWDLYAPYYTVSQ
IHVHCNFDKPLYHNDIALLQLSSKIEFNDVTKNITLADIDELEEGDKLTF
AGWGSSEAMGTYGRYLQEASGTYLPVDACREKLQNQDDVDLGHVCVQMDA
GQGACHGDTGGPLIDEQQRLVGIGNWGVPCGRGYPDVYARTAFYHDWIRT
TMNGCTIAASFLDH

BO18011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31266-PB 282 CG31266-PB 25..282 1..258 1413 100 Plus
CG31267-PA 275 CG31267-PA 44..275 27..258 637 47.4 Plus
CG5246-PA 272 CG5246-PA 31..265 17..252 527 43.7 Plus
CG31265-PA 266 CG31265-PA 35..260 26..254 489 41.9 Plus
CG31269-PB 273 CG31269-PB 37..268 27..261 482 43 Plus