Clone Sequence Records
BO18013.3prime Sequence
575 bp (507 high quality bases) assembled on 2006-10-13
> BO18013.3prime
ATGGTCTAGAAAGCTTGCCTTGATGCCAATAACACCACAGGCAATGCGGC
CGCCTGCATTGCCGGTCTTCTTGGAATCCGTGTGGTTGCCCAGACCGAGA
TCATCCTCCAATTCGTGGACAACAACTCCCCTGCCAATGATCCCCAGCTT
GCCAGTTAAGGTGATCACCTGATCCGTGTATGTAACGTCGATAATGCCCG
TGGAGTTGGCCTCCAGGTTGCCCAGATCGCCAACATGACGCACCTCGTGA
TCGGGGCCACCGTGATCAACCTTATCGGGGTTATAGTGAGCACCCATGCT
GATGCATCCATTGGTCAGATCTCCCTTCTCGTGAATGTGGAAGCCGTGCT
TGCCCTCCTTCAATCCCTCCAGCTGGACGCGCACATGGACATTCTGGCCA
CAGTCGTTCTGCGTAAAGGTCACGTTGCCCTTGACCTGGGTATTATCCGA
TTGCACGGGTCCAATCAGATAGGCAATGGCTTGAATGGGCATATTGCGCG
TCTGCGCAGCAGAGCAAATTGTGGCACAGAGTGCCAGGCTAACAACAAGA
TATTGCATCATGTCGACTGATAACT
BO18013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9027-PB | 546 | CG9027-RB | 1..543 | 561..19 | 2715 | 100 | Minus |
CG9027-PA | 546 | CG9027-RA | 1..543 | 561..19 | 2715 | 100 | Minus |
CG9027-PC | 567 | CG9027-RC | 22..564 | 561..19 | 2715 | 100 | Minus |
CG9027-PD | 654 | CG9027-RD | 1..542 | 561..20 | 2710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RA | 896 | CG9027-RA | 107..649 | 561..19 | 2715 | 100 | Minus |
Sod3-RB | 1040 | CG9027-RB | 251..793 | 561..19 | 2715 | 100 | Minus |
Sod3-RE | 1228 | CG9027-RE | 107..648 | 561..20 | 2710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11381949..11382183 | 265..499 | 1160 | 99.6 | Plus |
2R | 25286936 | 2R | 11381663..11381893 | 42..272 | 1155 | 100 | Plus |
2R | 25286936 | 2R | 11382249..11382311 | 499..561 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:26:10 has no hits.
BO18013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:01 Download gff for
BO18013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-PC | 10..567 | 15..573 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:32 Download gff for
BO18013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 246..796 | 15..566 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:04 Download gff for
BO18013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 246..796 | 15..566 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:04 Download gff for
BO18013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11381568..11381594 | 15..41 | 92 | <- | Plus |
2R | 11381663..11381891 | 42..270 | 100 | <- | Plus |
2R | 11381955..11382182 | 271..498 | 100 | <- | Plus |
2R | 11382249..11382323 | 499..573 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:32 Download gff for
BO18013.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7269073..7269099 | 15..41 | 92 | <- | Plus |
arm_2R | 7269168..7269396 | 42..270 | 100 | <- | Plus |
arm_2R | 7269460..7269687 | 271..498 | 100 | <- | Plus |
arm_2R | 7269754..7269828 | 499..573 | 93 | | Plus |
BO18013.5prime Sequence
575 bp (575 high quality bases) assembled on 2006-10-13
> BO18013.5prime
GAAGTTATCAGTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCT
GTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCC
ATTGCCTATCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGG
CAACGTGACCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCG
TCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAG
AAGGGAGATCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCC
CGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCG
ATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATAC
ACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGATCATTGGCAGGGG
AGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGG
ATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATT
GGCATCAAGGCAAGCTTTCTAGACC
BO18013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9027-PB | 546 | CG9027-RB | 1..543 | 17..559 | 2715 | 100 | Plus |
CG9027-PA | 546 | CG9027-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
CG9027-PC | 567 | CG9027-RC | 22..564 | 17..559 | 2715 | 100 | Plus |
CG9027-PD | 654 | CG9027-RD | 1..542 | 17..558 | 2710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RA | 896 | CG9027-RA | 107..649 | 17..559 | 2715 | 100 | Plus |
Sod3-RB | 1040 | CG9027-RB | 251..793 | 17..559 | 2715 | 100 | Plus |
Sod3-RE | 1228 | CG9027-RE | 107..648 | 17..558 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11381949..11382183 | 313..79 | 1160 | 99.6 | Minus |
2R | 25286936 | 2R | 11381663..11381893 | 536..306 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 11382249..11382311 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:40:44 has no hits.
BO18013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:02 Download gff for
BO18013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-PC | 10..567 | 5..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:59 Download gff for
BO18013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 246..796 | 12..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:07 Download gff for
BO18013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 246..796 | 12..563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:07 Download gff for
BO18013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11381568..11381594 | 537..563 | 92 | <- | Minus |
2R | 11381663..11381891 | 308..536 | 100 | <- | Minus |
2R | 11381955..11382182 | 80..307 | 100 | <- | Minus |
2R | 11382249..11382323 | 5..79 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:59 Download gff for
BO18013.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7269073..7269099 | 537..563 | 92 | <- | Minus |
arm_2R | 7269168..7269396 | 308..536 | 100 | <- | Minus |
arm_2R | 7269460..7269687 | 80..307 | 100 | <- | Minus |
arm_2R | 7269754..7269828 | 5..79 | 93 | | Minus |
BO18013.complete Sequence
577 bp assembled on 2006-10-11
GenBank Submission: FJ634281
> BO18013.complete
GAAGTTATCAGTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCT
GTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCC
ATTGCCTATCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGG
CAACGTGACCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCG
TCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAG
AAGGGAGATCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCC
CGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCG
ATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATAC
ACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGATCATTGGCAGGGG
AGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGG
ATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATT
GGCATCAAGGCAAGCTTTCTAGACCAT
BO18013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RA | 546 | CG9027-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Sod3-RB | 546 | CG9027-PB | 1..543 | 17..559 | 2715 | 100 | Plus |
Sod3-RE | 732 | CG9027-PE | 1..542 | 17..558 | 2710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RA | 896 | CG9027-RA | 107..649 | 17..559 | 2715 | 100 | Plus |
Sod3-RB | 1040 | CG9027-RB | 251..793 | 17..559 | 2715 | 100 | Plus |
Sod3-RE | 1228 | CG9027-RE | 107..648 | 17..558 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11381949..11382183 | 313..79 | 1160 | 99.6 | Minus |
2R | 25286936 | 2R | 11381663..11381893 | 536..306 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 11382249..11382311 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:02:53 has no hits.
BO18013.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:58 Download gff for
BO18013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-RC | 10..567 | 5..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:23 Download gff for
BO18013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-RC | 1766..2323 | 5..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:56 Download gff for
BO18013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 251..793 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:58 Download gff for
BO18013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-RC | 1766..2323 | 5..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:41 Download gff for
BO18013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RB | 251..793 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:41 Download gff for
BO18013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11381570..11381594 | 537..561 | 92 | <- | Minus |
2R | 11381663..11381891 | 308..536 | 100 | <- | Minus |
2R | 11381955..11382182 | 80..307 | 100 | <- | Minus |
2R | 11382249..11382311 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:56 Download gff for
BO18013.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7269075..7269099 | 537..561 | 92 | <- | Minus |
arm_2R | 7269168..7269396 | 308..536 | 100 | <- | Minus |
arm_2R | 7269460..7269687 | 80..307 | 100 | <- | Minus |
arm_2R | 7269754..7269816 | 17..79 | 100 | | Minus |
BO18013.pep Sequence
Translation from 16 to 577
> BO18013.pep
MMQYLVVSLALCATICSAAQTRNMPIQAIAYLIGPVQSDNTQVKGNVTFT
QNDCGQNVHVRVQLEGLKEGKHGFHIHEKGDLTNGCISMGAHYNPDKVDH
GGPDHEVRHVGDLGNLEANSTGIIDVTYTDQVITLTGKLGIIGRGVVVHE
LEDDLGLGNHTDSKKTGNAGGRIACGVIGIKASFLDH
BO18013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-PA | 181 | CG9027-PA | 1..181 | 1..181 | 960 | 100 | Plus |
Sod3-PB | 181 | CG9027-PB | 1..181 | 1..181 | 960 | 100 | Plus |
Sod3-PD | 217 | CG9027-PD | 1..182 | 1..182 | 956 | 98.9 | Plus |
Sod3-PE | 243 | CG9027-PE | 1..180 | 1..180 | 955 | 100 | Plus |
Sod-PA | 153 | CG11793-PA | 10..150 | 40..180 | 374 | 55.3 | Plus |