Clone BO18013 Report

Search the DGRC for BO18013

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG9027-RA
Protein status:BO18013.pep: validated full length
Sequenced Size:577

Clone Sequence Records

BO18013.3prime Sequence

575 bp (507 high quality bases) assembled on 2006-10-13

> BO18013.3prime
ATGGTCTAGAAAGCTTGCCTTGATGCCAATAACACCACAGGCAATGCGGC
CGCCTGCATTGCCGGTCTTCTTGGAATCCGTGTGGTTGCCCAGACCGAGA
TCATCCTCCAATTCGTGGACAACAACTCCCCTGCCAATGATCCCCAGCTT
GCCAGTTAAGGTGATCACCTGATCCGTGTATGTAACGTCGATAATGCCCG
TGGAGTTGGCCTCCAGGTTGCCCAGATCGCCAACATGACGCACCTCGTGA
TCGGGGCCACCGTGATCAACCTTATCGGGGTTATAGTGAGCACCCATGCT
GATGCATCCATTGGTCAGATCTCCCTTCTCGTGAATGTGGAAGCCGTGCT
TGCCCTCCTTCAATCCCTCCAGCTGGACGCGCACATGGACATTCTGGCCA
CAGTCGTTCTGCGTAAAGGTCACGTTGCCCTTGACCTGGGTATTATCCGA
TTGCACGGGTCCAATCAGATAGGCAATGGCTTGAATGGGCATATTGCGCG
TCTGCGCAGCAGAGCAAATTGTGGCACAGAGTGCCAGGCTAACAACAAGA
TATTGCATCATGTCGACTGATAACT

BO18013.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9027-PB 546 CG9027-RB 1..543 561..19 2715 100 Minus
CG9027-PA 546 CG9027-RA 1..543 561..19 2715 100 Minus
CG9027-PC 567 CG9027-RC 22..564 561..19 2715 100 Minus
CG9027-PD 654 CG9027-RD 1..542 561..20 2710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RA 896 CG9027-RA 107..649 561..19 2715 100 Minus
Sod3-RB 1040 CG9027-RB 251..793 561..19 2715 100 Minus
Sod3-RE 1228 CG9027-RE 107..648 561..20 2710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11381949..11382183 265..499 1160 99.6 Plus
2R 25286936 2R 11381663..11381893 42..272 1155 100 Plus
2R 25286936 2R 11382249..11382311 499..561 315 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:26:10 has no hits.

BO18013.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:01 Download gff for BO18013.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9027-PC 10..567 15..573 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:32 Download gff for BO18013.3prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 246..796 15..566 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:04 Download gff for BO18013.3prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 246..796 15..566 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:04 Download gff for BO18013.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11381568..11381594 15..41 92 <- Plus
2R 11381663..11381891 42..270 100 <- Plus
2R 11381955..11382182 271..498 100 <- Plus
2R 11382249..11382323 499..573 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:32 Download gff for BO18013.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7269073..7269099 15..41 92 <- Plus
arm_2R 7269168..7269396 42..270 100 <- Plus
arm_2R 7269460..7269687 271..498 100 <- Plus
arm_2R 7269754..7269828 499..573 93   Plus

BO18013.5prime Sequence

575 bp (575 high quality bases) assembled on 2006-10-13

> BO18013.5prime
GAAGTTATCAGTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCT
GTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCC
ATTGCCTATCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGG
CAACGTGACCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCG
TCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAG
AAGGGAGATCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCC
CGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCG
ATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATAC
ACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGATCATTGGCAGGGG
AGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGG
ATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATT
GGCATCAAGGCAAGCTTTCTAGACC

BO18013.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9027-PB 546 CG9027-RB 1..543 17..559 2715 100 Plus
CG9027-PA 546 CG9027-RA 1..543 17..559 2715 100 Plus
CG9027-PC 567 CG9027-RC 22..564 17..559 2715 100 Plus
CG9027-PD 654 CG9027-RD 1..542 17..558 2710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RA 896 CG9027-RA 107..649 17..559 2715 100 Plus
Sod3-RB 1040 CG9027-RB 251..793 17..559 2715 100 Plus
Sod3-RE 1228 CG9027-RE 107..648 17..558 2710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11381949..11382183 313..79 1160 99.6 Minus
2R 25286936 2R 11381663..11381893 536..306 1155 100 Minus
2R 25286936 2R 11382249..11382311 79..17 315 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:40:44 has no hits.

BO18013.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:02 Download gff for BO18013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9027-PC 10..567 5..563 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:59 Download gff for BO18013.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 246..796 12..563 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:07 Download gff for BO18013.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 246..796 12..563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:07 Download gff for BO18013.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11381568..11381594 537..563 92 <- Minus
2R 11381663..11381891 308..536 100 <- Minus
2R 11381955..11382182 80..307 100 <- Minus
2R 11382249..11382323 5..79 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:59 Download gff for BO18013.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7269073..7269099 537..563 92 <- Minus
arm_2R 7269168..7269396 308..536 100 <- Minus
arm_2R 7269460..7269687 80..307 100 <- Minus
arm_2R 7269754..7269828 5..79 93   Minus

BO18013.complete Sequence

577 bp assembled on 2006-10-11

GenBank Submission: FJ634281

> BO18013.complete
GAAGTTATCAGTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCT
GTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCC
ATTGCCTATCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGG
CAACGTGACCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCG
TCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAG
AAGGGAGATCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCC
CGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCG
ATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATAC
ACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGATCATTGGCAGGGG
AGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGG
ATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATT
GGCATCAAGGCAAGCTTTCTAGACCAT

BO18013.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RA 546 CG9027-PA 1..543 17..559 2715 100 Plus
Sod3-RB 546 CG9027-PB 1..543 17..559 2715 100 Plus
Sod3-RE 732 CG9027-PE 1..542 17..558 2710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RA 896 CG9027-RA 107..649 17..559 2715 100 Plus
Sod3-RB 1040 CG9027-RB 251..793 17..559 2715 100 Plus
Sod3-RE 1228 CG9027-RE 107..648 17..558 2710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11381949..11382183 313..79 1160 99.6 Minus
2R 25286936 2R 11381663..11381893 536..306 1155 100 Minus
2R 25286936 2R 11382249..11382311 79..17 315 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:02:53 has no hits.

BO18013.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:58 Download gff for BO18013.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 10..567 5..563 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:23 Download gff for BO18013.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1766..2323 5..563 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:56 Download gff for BO18013.complete
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 251..793 17..561 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:58 Download gff for BO18013.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1766..2323 5..563 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:41 Download gff for BO18013.complete
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 251..793 17..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:41 Download gff for BO18013.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11381570..11381594 537..561 92 <- Minus
2R 11381663..11381891 308..536 100 <- Minus
2R 11381955..11382182 80..307 100 <- Minus
2R 11382249..11382311 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:56 Download gff for BO18013.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7269075..7269099 537..561 92 <- Minus
arm_2R 7269168..7269396 308..536 100 <- Minus
arm_2R 7269460..7269687 80..307 100 <- Minus
arm_2R 7269754..7269816 17..79 100   Minus

BO18013.pep Sequence

Translation from 16 to 577

> BO18013.pep
MMQYLVVSLALCATICSAAQTRNMPIQAIAYLIGPVQSDNTQVKGNVTFT
QNDCGQNVHVRVQLEGLKEGKHGFHIHEKGDLTNGCISMGAHYNPDKVDH
GGPDHEVRHVGDLGNLEANSTGIIDVTYTDQVITLTGKLGIIGRGVVVHE
LEDDLGLGNHTDSKKTGNAGGRIACGVIGIKASFLDH

BO18013.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-PA 181 CG9027-PA 1..181 1..181 960 100 Plus
Sod3-PB 181 CG9027-PB 1..181 1..181 960 100 Plus
Sod3-PD 217 CG9027-PD 1..182 1..182 956 98.9 Plus
Sod3-PE 243 CG9027-PE 1..180 1..180 955 100 Plus
Sod-PA 153 CG11793-PA 10..150 40..180 374 55.3 Plus