Clone Sequence Records
BO18018.3prime Sequence
772 bp (717 high quality bases) assembled on 2006-10-13
> BO18018.3prime
ATGGTCTAGAAAGCTTGCTCGGCTGCTTAGATAGAGCCCCACTTGAGCCA
GCCATAGATAAACCCCCAGCACGGGAAGAAAACGAGTTTCTCCGTTTGTG
GCATAGCTATAATACGAGGAGGTGGTCTGCAGGACAAGCGAATCCTTGGG
CTGGAGCTGCAGCGATGTTGAGTTCACGAGATCGCCCACTTTGACTTGAG
ATCGCTCTGTGACCACCACAACTTTGAGTTGAGGTGGCAAGTCGGGGAAA
CTCTGCAGCAAATTTATGGTTTCTACTCCGTCGTAAATGTTCAAAAGGGT
CAAGTACGTTGAATCACGCTCGAGATACCGTTTAACGGCCAAAACGGCGT
CGCTGAGGGCCTTCACTTCAGTTTCGCCGCGTTTAAGGGTCTGGGACTGC
TTCCTTAACTGCCAGAGCTGTTTGAAGACGTTCAGGTGACTAAGGGGCTT
CTGCCGCTCCTGCTCCACATTCACCTCCTTGTAATCCACGGCGATGGGCA
GCCAGGTCTTGCTGGCATTGCTGAACCCAGCGTCCTGGGCATCAGTCCAC
TGGAAGGGCGTTCGCTCCGGATCGCGGGAGTACTGCTCATAGATGCTGGG
ATTGGTGTTGCAGGCCGATGGATCCACCGTGTCCTTCCACGAGATCCACA
CATTGGTCATGCCCAGCTCCTCGCCCTGGTAGGTGACACTGGCGCCGGGC
AGCGTGGCAGTGAGCATGTTTAGCATGTCCACACGATCCCTGCCCAGCCG
GGAGCCCACTCGGGGCTGATCG
BO18018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30359-PA | 1893 | CG30359-RA | 1137..1890 | 772..19 | 3770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A5-RB | 2102 | CG30359-RB | 1286..2039 | 772..19 | 3770 | 100 | Minus |
Mal-A5-RA | 2045 | CG30359-RA | 1229..1982 | 772..19 | 3770 | 100 | Minus |
Mal-A5-RC | 1988 | CG30359-RC | 1525..1925 | 419..19 | 2005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8464156..8464601 | 772..327 | 2230 | 100 | Minus |
2R | 25286936 | 2R | 8464863..8465029 | 185..19 | 835 | 100 | Minus |
2R | 25286936 | 2R | 8464652..8464796 | 329..185 | 725 | 100 | Minus |
2R | 25286936 | 2R | 8473222..8473381 | 702..543 | 320 | 80 | Minus |
2R | 25286936 | 2R | 8456572..8456651 | 623..702 | 205 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:42:26 has no hits.
BO18018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:06 Download gff for
BO18018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30359-PA | 1137..1893 | 16..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:56:31 Download gff for
BO18018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 1229..1988 | 11..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:35:25 Download gff for
BO18018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 1229..1988 | 11..772 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:35:25 Download gff for
BO18018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8464156..8464599 | 329..772 | 100 | -> | Minus |
2R | 8464653..8464796 | 185..328 | 100 | -> | Minus |
2R | 8464864..8465035 | 11..184 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:56:31 Download gff for
BO18018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4351661..4352104 | 329..772 | 100 | -> | Minus |
arm_2R | 4352158..4352301 | 185..328 | 100 | -> | Minus |
arm_2R | 4352369..4352540 | 11..184 | 97 | | Minus |
BO18018.5prime Sequence
822 bp (755 high quality bases) assembled on 2006-10-13
> BO18018.5prime
GAAGTTATCAGTCGACATGATAAAATACCGACTGATAGCGTTCTTGGCAG
TGCTCCTCCAGTTACACTGCCCAACTCTGGGCCAACCGTATCCCAATTAC
CATGCGGATTTTGTTGGCATCGGGGACCATGGCGCTGACCTCAAGTGGTG
GCAGACCGCGGCCTTCTATCAGATCTACCCAAGGTCATTTAAAGACAGCA
ACGGCGATGGCGTGGGTGATCTGAATGGCATCGCGGAGCAACTTCCATAC
CTTAAGGAGCTGGGAATCACGGCCACTTGGCTATCGCCCATCTTCACCTC
ACCCATGGCAGACTTTGGCTACGATATAGCCAACTTCACTGAGATTGCTC
CTATTTTCGGAACAATGGCGGACTTTGAACACCTGATGGAGGTTGCCAAA
AAGCTAGACATCAAGATCATCCTGGACTTTGTGCCAAACCATTCGAGTGA
TGAATGTGAGTGGTTCCGTCGCTCGGCGGCTCGTGATCCGGAATTCAAGG
ACTTCTACGTATGGCATCCTGGGCGTATGGAAAACGGCAATCGGCATCCG
CCCTCCAATTGGATTAGCGTTTTCCGGGGAAGTGCCTGGCAGTGGCACGA
AGGTCGTCAGGAGTTCTACCTGCACCAGTTCGTGAAGAAGCAACCGGATC
TAAACTATCGAAACCCAAAGGTCCGGGAGACCATGAGTAACGTCTTGAGA
TTTTGGCTTGGCAAGGGAGTAGCCGGCTTTCGTATTGATGCAGTGCCCCA
TGTGTTCGAAATAGCGCCGGATAATCAGAATCAGTACCGTGATGAGCCGC
GAAACGACTGGGACAACGACCC
BO18018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30359-PA | 1893 | CG30359-RA | 1..806 | 17..822 | 4030 | 100 | Plus |
CG30360-PB | 1743 | CG30360-RB | 389..435 | 408..454 | 185 | 95.7 | Plus |
CG30360-PA | 1821 | CG30360-RA | 389..435 | 408..454 | 185 | 95.7 | Plus |
CG14935-PA | 1695 | CG14935-RA | 61..107 | 164..210 | 135 | 91.4 | Plus |
CG14935-PB | 1752 | CG14935-RB | 118..164 | 164..210 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A5-RC | 1988 | CG30359-RC | 93..898 | 17..822 | 4030 | 100 | Plus |
Mal-A5-RA | 2045 | CG30359-RA | 93..898 | 17..822 | 4030 | 100 | Plus |
Mal-A5-RB | 2102 | CG30359-RB | 360..955 | 227..822 | 2980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8463112..8463573 | 227..688 | 2310 | 100 | Plus |
2R | 25286936 | 2R | 8462845..8463056 | 17..228 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 8463631..8463764 | 689..822 | 670 | 100 | Plus |
2R | 25286936 | 2R | 8457358..8457626 | 516..248 | 340 | 75.1 | Minus |
2R | 25286936 | 2R | 8465398..8465604 | 248..454 | 300 | 76.3 | Plus |
2R | 25286936 | 2R | 8458893..8459398 | 146..648 | 275 | 70.8 | Plus |
2R | 25286936 | 2R | 8453829..8454031 | 248..450 | 250 | 74.9 | Plus |
2R | 25286936 | 2R | 8471348..8471436 | 336..248 | 235 | 84.3 | Minus |
2R | 25286936 | 2R | 8472079..8472261 | 146..328 | 225 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:53:47 has no hits.
BO18018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:06 Download gff for
BO18018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30359-PA | 1..806 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:25:42 Download gff for
BO18018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 84..898 | 8..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:32 Download gff for
BO18018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 84..898 | 8..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:32 Download gff for
BO18018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8462836..8463055 | 8..227 | 98 | -> | Plus |
2R | 8463113..8463573 | 228..688 | 100 | -> | Plus |
2R | 8463631..8463764 | 689..822 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:25:42 Download gff for
BO18018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4350341..4350560 | 8..227 | 98 | -> | Plus |
arm_2R | 4350618..4351078 | 228..688 | 100 | -> | Plus |
arm_2R | 4351136..4351269 | 689..822 | 100 | | Plus |
BO18018.complete Sequence
1924 bp assembled on 2007-03-23
GenBank Submission: FJ634282
> BO18018.complete
GAAGTTATCAGTCGACATGATAAAATACCGACTGATAGCGTTCTTGGCAG
TGCTCCTCCAGTTACACTGCCCAACTCTGGGCCAACCGTATCCCAATTAC
CATGCGGATTTTGTTGGCATCGGGGACCATGGCGCTGACCTCAAGTGGTG
GCAGACCGCGGCCTTCTATCAGATCTACCCAAGGTCATTTAAAGACAGCA
ACGGCGATGGCGTGGGTGATCTGAATGGCATCGCGGAGCAACTTCCATAC
CTTAAGGAGCTGGGAATCACGGCCACTTGGCTATCGCCCATCTTCACCTC
ACCCATGGCAGACTTTGGCTACGATATAGCCAACTTCACTGAGATTGCTC
CTATTTTCGGAACAATGGCGGACTTTGAACACCTGATGGAGGTTGCCAAA
AAGCTAGACATCAAGATCATCCTGGACTTTGTGCCAAACCATTCGAGTGA
TGAATGTGAGTGGTTCCGTCGCTCGGCGGCTCGTGATCCGGAATTCAAGG
ACTTCTACGTATGGCATCCTGGGCGTATGGAAAACGGCAATCGGCATCCG
CCCTCCAATTGGATTAGCGTTTTCCGGGGAAGTGCCTGGCAGTGGCACGA
AGGTCGTCAGGAGTTCTACCTGCACCAGTTCGTGAAGAAGCAACCGGATC
TAAACTATCGAAACCCAAAGGTCCGGGAGACCATGAGTAACGTCTTGAGA
TTTTGGCTTGGCAAGGGAGTAGCCGGCTTTCGTATTGATGCAGTGCCCCA
TGTGTTCGAAATAGCGCCGGATAATCAGAATCAGTACCGTGATGAGCCGC
GAAACGACTGGGACAACGACCCCGAGGACTATGGCTATCTGCAGCACATC
TACACCAAGGATCAGCCGGAGACCATTGACCTGGTGTACTCGTGGCGAGC
TGTTCTGGATGCGCACCAGAGGGAGCACGGCGGGGAGGACCGCATCTTAA
TGGCCGAGACCTACTCACCCATAGATATCGTGATGCAGTATTACGGCAAT
GCGACGGCGGAGGGCGCTCAGCTGCCGTTCAACTTTCTGCTGATAAGCGA
GCTGTCCAACTCGTCGAATGCCCACGCCTACGAGGGAACAGTGCTCAAGT
GGCTGCAGCACATGCCCAAAGGTCGCACTGCCAACTGGGTGTTGGGTAAC
CACGATCAGCCCCGAGTGGGCTCCCGGCTGGGCAGGGATCGTGTGGACAT
GCTAAACATGCTCACTGCCACGCTGCCCGGCGCCAGTGTCACCTACCAGG
GCGAGGAGCTGGGCATGACCAATGTGTGGATCTCGTGGAAGGACACGGTG
GATCCATCGGCCTGCAACACCAATCCCAGCATCTATGAGCAGTACTCCCG
CGATCCGGAGCGAACGCCCTTCCAGTGGACTGATGCCCAGGACGCTGGGT
TCAGCAATGCCAGCAAGACCTGGCTGCCCATCGCCGTGGATTACAAGGAG
GTGAATGTGGAGCAGGAGCGGCAGAAGCCCCTTAGTCACCTGAACGTCTT
CAAACAGCTCTGGCAGTTAAGGAAGCAGTCCCAGACCCTTAAACGCGGCG
AAACTGAAGTGAAGGCCCTCAGCGACGCCGTTTTGGCCGTTAAACGGTAT
CTCGAGCGTGATTCAACGTACTTGACCCTTTTGAACATTTACGACGGAGT
AGAAACCATAAATTTGCTGCAGAGTTTCCCCGACTTGCCACCTCAACTCA
AAGTTGTGGTGGTCACAGAGCGATCTCAAGTCAAAGTGGGCGATCTCGTG
AACTCAACATCGCTGCAGCTCCAGCCCAAGGATTCGCTTGTCCTGCAGAC
CACCTCCTCGTATTATAGCTATGCCACAAACGGAGAAACTCGTTTTCTTC
CCGTGCTGGGGGTTTATCTATGGCTGGCTCAAGTGGGGCTCTATCTAAGC
AGCCGAGCAAGCTTTCTAGACCAT
BO18018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A5-RA | 1893 | CG30359-PA | 1..1890 | 17..1906 | 9450 | 100 | Plus |
Mal-A5-RB | 1605 | CG30359-PB | 1..1602 | 305..1906 | 8010 | 100 | Plus |
Mal-A5-RC | 1836 | CG30359-PC | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A5-RA | 2045 | CG30359-RA | 93..1982 | 17..1906 | 9450 | 100 | Plus |
Mal-A5-RB | 2102 | CG30359-RB | 360..2039 | 227..1906 | 8400 | 100 | Plus |
Mal-A5-RC | 1988 | CG30359-RC | 93..1526 | 17..1450 | 7170 | 100 | Plus |
Mal-A5-RB | 2102 | CG30359-RB | 93..304 | 17..228 | 1060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8463112..8463573 | 227..688 | 2310 | 100 | Plus |
2R | 25286936 | 2R | 8464144..8464601 | 1141..1598 | 2290 | 100 | Plus |
2R | 25286936 | 2R | 8463631..8464083 | 689..1141 | 2265 | 100 | Plus |
2R | 25286936 | 2R | 8462845..8463056 | 17..228 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 8464863..8465029 | 1740..1906 | 835 | 100 | Plus |
2R | 25286936 | 2R | 8464652..8464796 | 1596..1740 | 725 | 100 | Plus |
2R | 25286936 | 2R | 8457358..8457626 | 516..248 | 340 | 75.1 | Minus |
2R | 25286936 | 2R | 8473222..8473381 | 1223..1382 | 320 | 80 | Plus |
2R | 25286936 | 2R | 8465398..8465604 | 248..454 | 300 | 76.3 | Plus |
2R | 25286936 | 2R | 8458893..8459398 | 146..648 | 275 | 70.8 | Plus |
2R | 25286936 | 2R | 8453829..8454031 | 248..450 | 250 | 74.9 | Plus |
2R | 25286936 | 2R | 8471348..8471436 | 336..248 | 235 | 84.3 | Minus |
2R | 25286936 | 2R | 8472079..8472261 | 146..328 | 225 | 74.9 | Plus |
2R | 25286936 | 2R | 8456572..8456651 | 1302..1223 | 205 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:43:24 has no hits.
BO18018.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:38 Download gff for
BO18018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30359-RA | 1..1893 | 17..1909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:50 Download gff for
BO18018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30359-RA | 64..1968 | 8..1914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:05 Download gff for
BO18018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 93..1982 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:38 Download gff for
BO18018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30359-RA | 64..1968 | 8..1914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:24 Download gff for
BO18018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A5-RA | 93..1982 | 17..1908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:24 Download gff for
BO18018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8464864..8465029 | 1741..1908 | 98 | | Plus |
2R | 8463113..8463573 | 228..688 | 100 | -> | Plus |
2R | 8463631..8464083 | 689..1141 | 100 | -> | Plus |
2R | 8464145..8464599 | 1142..1596 | 100 | -> | Plus |
2R | 8462845..8463055 | 17..227 | 100 | -> | Plus |
2R | 8464653..8464796 | 1597..1740 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:05 Download gff for
BO18018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4352369..4352534 | 1741..1908 | 98 | | Plus |
arm_2R | 4352158..4352301 | 1597..1740 | 100 | -> | Plus |
arm_2R | 4350350..4350560 | 17..227 | 100 | -> | Plus |
arm_2R | 4350618..4351078 | 228..688 | 100 | -> | Plus |
arm_2R | 4351136..4351588 | 689..1141 | 100 | -> | Plus |
arm_2R | 4351650..4352104 | 1142..1596 | 100 | -> | Plus |
BO18018.pep Sequence
Translation from 16 to 1924
> BO18018.pep
MIKYRLIAFLAVLLQLHCPTLGQPYPNYHADFVGIGDHGADLKWWQTAAF
YQIYPRSFKDSNGDGVGDLNGIAEQLPYLKELGITATWLSPIFTSPMADF
GYDIANFTEIAPIFGTMADFEHLMEVAKKLDIKIILDFVPNHSSDECEWF
RRSAARDPEFKDFYVWHPGRMENGNRHPPSNWISVFRGSAWQWHEGRQEF
YLHQFVKKQPDLNYRNPKVRETMSNVLRFWLGKGVAGFRIDAVPHVFEIA
PDNQNQYRDEPRNDWDNDPEDYGYLQHIYTKDQPETIDLVYSWRAVLDAH
QREHGGEDRILMAETYSPIDIVMQYYGNATAEGAQLPFNFLLISELSNSS
NAHAYEGTVLKWLQHMPKGRTANWVLGNHDQPRVGSRLGRDRVDMLNMLT
ATLPGASVTYQGEELGMTNVWISWKDTVDPSACNTNPSIYEQYSRDPERT
PFQWTDAQDAGFSNASKTWLPIAVDYKEVNVEQERQKPLSHLNVFKQLWQ
LRKQSQTLKRGETEVKALSDAVLAVKRYLERDSTYLTLLNIYDGVETINL
LQSFPDLPPQLKVVVVTERSQVKVGDLVNSTSLQLQPKDSLVLQTTSSYY
SYATNGETRFLPVLGVYLWLAQVGLYLSSRASFLDH
BO18018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A5-PA | 630 | CG30359-PA | 1..630 | 1..630 | 3389 | 100 | Plus |
Mal-A5-PC | 611 | CG30359-PC | 1..611 | 1..630 | 3262 | 97 | Plus |
Mal-A5-PB | 534 | CG30359-PB | 1..534 | 97..630 | 2863 | 100 | Plus |
Mal-A4-PA | 579 | CG8693-PA | 24..578 | 44..598 | 1899 | 61 | Plus |
Mal-A3-PA | 574 | CG8695-PA | 19..573 | 40..595 | 1872 | 62.1 | Plus |