Clone BO18018 Report

Search the DGRC for BO18018

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG30359-RA
Protein status:BO18018.pep: validated full length
Sequenced Size:1924

Clone Sequence Records

BO18018.3prime Sequence

772 bp (717 high quality bases) assembled on 2006-10-13

> BO18018.3prime
ATGGTCTAGAAAGCTTGCTCGGCTGCTTAGATAGAGCCCCACTTGAGCCA
GCCATAGATAAACCCCCAGCACGGGAAGAAAACGAGTTTCTCCGTTTGTG
GCATAGCTATAATACGAGGAGGTGGTCTGCAGGACAAGCGAATCCTTGGG
CTGGAGCTGCAGCGATGTTGAGTTCACGAGATCGCCCACTTTGACTTGAG
ATCGCTCTGTGACCACCACAACTTTGAGTTGAGGTGGCAAGTCGGGGAAA
CTCTGCAGCAAATTTATGGTTTCTACTCCGTCGTAAATGTTCAAAAGGGT
CAAGTACGTTGAATCACGCTCGAGATACCGTTTAACGGCCAAAACGGCGT
CGCTGAGGGCCTTCACTTCAGTTTCGCCGCGTTTAAGGGTCTGGGACTGC
TTCCTTAACTGCCAGAGCTGTTTGAAGACGTTCAGGTGACTAAGGGGCTT
CTGCCGCTCCTGCTCCACATTCACCTCCTTGTAATCCACGGCGATGGGCA
GCCAGGTCTTGCTGGCATTGCTGAACCCAGCGTCCTGGGCATCAGTCCAC
TGGAAGGGCGTTCGCTCCGGATCGCGGGAGTACTGCTCATAGATGCTGGG
ATTGGTGTTGCAGGCCGATGGATCCACCGTGTCCTTCCACGAGATCCACA
CATTGGTCATGCCCAGCTCCTCGCCCTGGTAGGTGACACTGGCGCCGGGC
AGCGTGGCAGTGAGCATGTTTAGCATGTCCACACGATCCCTGCCCAGCCG
GGAGCCCACTCGGGGCTGATCG

BO18018.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG30359-PA 1893 CG30359-RA 1137..1890 772..19 3770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A5-RB 2102 CG30359-RB 1286..2039 772..19 3770 100 Minus
Mal-A5-RA 2045 CG30359-RA 1229..1982 772..19 3770 100 Minus
Mal-A5-RC 1988 CG30359-RC 1525..1925 419..19 2005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8464156..8464601 772..327 2230 100 Minus
2R 25286936 2R 8464863..8465029 185..19 835 100 Minus
2R 25286936 2R 8464652..8464796 329..185 725 100 Minus
2R 25286936 2R 8473222..8473381 702..543 320 80 Minus
2R 25286936 2R 8456572..8456651 623..702 205 83.8 Plus
Blast to na_te.dros performed on 2015-02-11 18:42:26 has no hits.

BO18018.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:06 Download gff for BO18018.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30359-PA 1137..1893 16..772 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:56:31 Download gff for BO18018.3prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 1229..1988 11..772 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:35:25 Download gff for BO18018.3prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 1229..1988 11..772 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:35:25 Download gff for BO18018.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8464156..8464599 329..772 100 -> Minus
2R 8464653..8464796 185..328 100 -> Minus
2R 8464864..8465035 11..184 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:56:31 Download gff for BO18018.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4351661..4352104 329..772 100 -> Minus
arm_2R 4352158..4352301 185..328 100 -> Minus
arm_2R 4352369..4352540 11..184 97   Minus

BO18018.5prime Sequence

822 bp (755 high quality bases) assembled on 2006-10-13

> BO18018.5prime
GAAGTTATCAGTCGACATGATAAAATACCGACTGATAGCGTTCTTGGCAG
TGCTCCTCCAGTTACACTGCCCAACTCTGGGCCAACCGTATCCCAATTAC
CATGCGGATTTTGTTGGCATCGGGGACCATGGCGCTGACCTCAAGTGGTG
GCAGACCGCGGCCTTCTATCAGATCTACCCAAGGTCATTTAAAGACAGCA
ACGGCGATGGCGTGGGTGATCTGAATGGCATCGCGGAGCAACTTCCATAC
CTTAAGGAGCTGGGAATCACGGCCACTTGGCTATCGCCCATCTTCACCTC
ACCCATGGCAGACTTTGGCTACGATATAGCCAACTTCACTGAGATTGCTC
CTATTTTCGGAACAATGGCGGACTTTGAACACCTGATGGAGGTTGCCAAA
AAGCTAGACATCAAGATCATCCTGGACTTTGTGCCAAACCATTCGAGTGA
TGAATGTGAGTGGTTCCGTCGCTCGGCGGCTCGTGATCCGGAATTCAAGG
ACTTCTACGTATGGCATCCTGGGCGTATGGAAAACGGCAATCGGCATCCG
CCCTCCAATTGGATTAGCGTTTTCCGGGGAAGTGCCTGGCAGTGGCACGA
AGGTCGTCAGGAGTTCTACCTGCACCAGTTCGTGAAGAAGCAACCGGATC
TAAACTATCGAAACCCAAAGGTCCGGGAGACCATGAGTAACGTCTTGAGA
TTTTGGCTTGGCAAGGGAGTAGCCGGCTTTCGTATTGATGCAGTGCCCCA
TGTGTTCGAAATAGCGCCGGATAATCAGAATCAGTACCGTGATGAGCCGC
GAAACGACTGGGACAACGACCC

BO18018.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30359-PA 1893 CG30359-RA 1..806 17..822 4030 100 Plus
CG30360-PB 1743 CG30360-RB 389..435 408..454 185 95.7 Plus
CG30360-PA 1821 CG30360-RA 389..435 408..454 185 95.7 Plus
CG14935-PA 1695 CG14935-RA 61..107 164..210 135 91.4 Plus
CG14935-PB 1752 CG14935-RB 118..164 164..210 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A5-RC 1988 CG30359-RC 93..898 17..822 4030 100 Plus
Mal-A5-RA 2045 CG30359-RA 93..898 17..822 4030 100 Plus
Mal-A5-RB 2102 CG30359-RB 360..955 227..822 2980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8463112..8463573 227..688 2310 100 Plus
2R 25286936 2R 8462845..8463056 17..228 1060 100 Plus
2R 25286936 2R 8463631..8463764 689..822 670 100 Plus
2R 25286936 2R 8457358..8457626 516..248 340 75.1 Minus
2R 25286936 2R 8465398..8465604 248..454 300 76.3 Plus
2R 25286936 2R 8458893..8459398 146..648 275 70.8 Plus
2R 25286936 2R 8453829..8454031 248..450 250 74.9 Plus
2R 25286936 2R 8471348..8471436 336..248 235 84.3 Minus
2R 25286936 2R 8472079..8472261 146..328 225 74.9 Plus
Blast to na_te.dros performed on 2015-02-10 15:53:47 has no hits.

BO18018.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:06 Download gff for BO18018.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30359-PA 1..806 17..822 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:25:42 Download gff for BO18018.5prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 84..898 8..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:37:32 Download gff for BO18018.5prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 84..898 8..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:37:32 Download gff for BO18018.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8462836..8463055 8..227 98 -> Plus
2R 8463113..8463573 228..688 100 -> Plus
2R 8463631..8463764 689..822 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:25:42 Download gff for BO18018.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4350341..4350560 8..227 98 -> Plus
arm_2R 4350618..4351078 228..688 100 -> Plus
arm_2R 4351136..4351269 689..822 100   Plus

BO18018.complete Sequence

1924 bp assembled on 2007-03-23

GenBank Submission: FJ634282

> BO18018.complete
GAAGTTATCAGTCGACATGATAAAATACCGACTGATAGCGTTCTTGGCAG
TGCTCCTCCAGTTACACTGCCCAACTCTGGGCCAACCGTATCCCAATTAC
CATGCGGATTTTGTTGGCATCGGGGACCATGGCGCTGACCTCAAGTGGTG
GCAGACCGCGGCCTTCTATCAGATCTACCCAAGGTCATTTAAAGACAGCA
ACGGCGATGGCGTGGGTGATCTGAATGGCATCGCGGAGCAACTTCCATAC
CTTAAGGAGCTGGGAATCACGGCCACTTGGCTATCGCCCATCTTCACCTC
ACCCATGGCAGACTTTGGCTACGATATAGCCAACTTCACTGAGATTGCTC
CTATTTTCGGAACAATGGCGGACTTTGAACACCTGATGGAGGTTGCCAAA
AAGCTAGACATCAAGATCATCCTGGACTTTGTGCCAAACCATTCGAGTGA
TGAATGTGAGTGGTTCCGTCGCTCGGCGGCTCGTGATCCGGAATTCAAGG
ACTTCTACGTATGGCATCCTGGGCGTATGGAAAACGGCAATCGGCATCCG
CCCTCCAATTGGATTAGCGTTTTCCGGGGAAGTGCCTGGCAGTGGCACGA
AGGTCGTCAGGAGTTCTACCTGCACCAGTTCGTGAAGAAGCAACCGGATC
TAAACTATCGAAACCCAAAGGTCCGGGAGACCATGAGTAACGTCTTGAGA
TTTTGGCTTGGCAAGGGAGTAGCCGGCTTTCGTATTGATGCAGTGCCCCA
TGTGTTCGAAATAGCGCCGGATAATCAGAATCAGTACCGTGATGAGCCGC
GAAACGACTGGGACAACGACCCCGAGGACTATGGCTATCTGCAGCACATC
TACACCAAGGATCAGCCGGAGACCATTGACCTGGTGTACTCGTGGCGAGC
TGTTCTGGATGCGCACCAGAGGGAGCACGGCGGGGAGGACCGCATCTTAA
TGGCCGAGACCTACTCACCCATAGATATCGTGATGCAGTATTACGGCAAT
GCGACGGCGGAGGGCGCTCAGCTGCCGTTCAACTTTCTGCTGATAAGCGA
GCTGTCCAACTCGTCGAATGCCCACGCCTACGAGGGAACAGTGCTCAAGT
GGCTGCAGCACATGCCCAAAGGTCGCACTGCCAACTGGGTGTTGGGTAAC
CACGATCAGCCCCGAGTGGGCTCCCGGCTGGGCAGGGATCGTGTGGACAT
GCTAAACATGCTCACTGCCACGCTGCCCGGCGCCAGTGTCACCTACCAGG
GCGAGGAGCTGGGCATGACCAATGTGTGGATCTCGTGGAAGGACACGGTG
GATCCATCGGCCTGCAACACCAATCCCAGCATCTATGAGCAGTACTCCCG
CGATCCGGAGCGAACGCCCTTCCAGTGGACTGATGCCCAGGACGCTGGGT
TCAGCAATGCCAGCAAGACCTGGCTGCCCATCGCCGTGGATTACAAGGAG
GTGAATGTGGAGCAGGAGCGGCAGAAGCCCCTTAGTCACCTGAACGTCTT
CAAACAGCTCTGGCAGTTAAGGAAGCAGTCCCAGACCCTTAAACGCGGCG
AAACTGAAGTGAAGGCCCTCAGCGACGCCGTTTTGGCCGTTAAACGGTAT
CTCGAGCGTGATTCAACGTACTTGACCCTTTTGAACATTTACGACGGAGT
AGAAACCATAAATTTGCTGCAGAGTTTCCCCGACTTGCCACCTCAACTCA
AAGTTGTGGTGGTCACAGAGCGATCTCAAGTCAAAGTGGGCGATCTCGTG
AACTCAACATCGCTGCAGCTCCAGCCCAAGGATTCGCTTGTCCTGCAGAC
CACCTCCTCGTATTATAGCTATGCCACAAACGGAGAAACTCGTTTTCTTC
CCGTGCTGGGGGTTTATCTATGGCTGGCTCAAGTGGGGCTCTATCTAAGC
AGCCGAGCAAGCTTTCTAGACCAT

BO18018.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A5-RA 1893 CG30359-PA 1..1890 17..1906 9450 100 Plus
Mal-A5-RB 1605 CG30359-PB 1..1602 305..1906 8010 100 Plus
Mal-A5-RC 1836 CG30359-PC 1..1434 17..1450 7170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A5-RA 2045 CG30359-RA 93..1982 17..1906 9450 100 Plus
Mal-A5-RB 2102 CG30359-RB 360..2039 227..1906 8400 100 Plus
Mal-A5-RC 1988 CG30359-RC 93..1526 17..1450 7170 100 Plus
Mal-A5-RB 2102 CG30359-RB 93..304 17..228 1060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8463112..8463573 227..688 2310 100 Plus
2R 25286936 2R 8464144..8464601 1141..1598 2290 100 Plus
2R 25286936 2R 8463631..8464083 689..1141 2265 100 Plus
2R 25286936 2R 8462845..8463056 17..228 1060 100 Plus
2R 25286936 2R 8464863..8465029 1740..1906 835 100 Plus
2R 25286936 2R 8464652..8464796 1596..1740 725 100 Plus
2R 25286936 2R 8457358..8457626 516..248 340 75.1 Minus
2R 25286936 2R 8473222..8473381 1223..1382 320 80 Plus
2R 25286936 2R 8465398..8465604 248..454 300 76.3 Plus
2R 25286936 2R 8458893..8459398 146..648 275 70.8 Plus
2R 25286936 2R 8453829..8454031 248..450 250 74.9 Plus
2R 25286936 2R 8471348..8471436 336..248 235 84.3 Minus
2R 25286936 2R 8472079..8472261 146..328 225 74.9 Plus
2R 25286936 2R 8456572..8456651 1302..1223 205 83.8 Minus
Blast to na_te.dros performed on 2014-11-27 14:43:24 has no hits.

BO18018.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:38 Download gff for BO18018.complete
Subject Subject Range Query Range Percent Splice Strand
CG30359-RA 1..1893 17..1909 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:50 Download gff for BO18018.complete
Subject Subject Range Query Range Percent Splice Strand
CG30359-RA 64..1968 8..1914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:05 Download gff for BO18018.complete
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 93..1982 17..1908 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:38 Download gff for BO18018.complete
Subject Subject Range Query Range Percent Splice Strand
CG30359-RA 64..1968 8..1914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:24 Download gff for BO18018.complete
Subject Subject Range Query Range Percent Splice Strand
Mal-A5-RA 93..1982 17..1908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:24 Download gff for BO18018.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8464864..8465029 1741..1908 98   Plus
2R 8463113..8463573 228..688 100 -> Plus
2R 8463631..8464083 689..1141 100 -> Plus
2R 8464145..8464599 1142..1596 100 -> Plus
2R 8462845..8463055 17..227 100 -> Plus
2R 8464653..8464796 1597..1740 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:05 Download gff for BO18018.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4352369..4352534 1741..1908 98   Plus
arm_2R 4352158..4352301 1597..1740 100 -> Plus
arm_2R 4350350..4350560 17..227 100 -> Plus
arm_2R 4350618..4351078 228..688 100 -> Plus
arm_2R 4351136..4351588 689..1141 100 -> Plus
arm_2R 4351650..4352104 1142..1596 100 -> Plus

BO18018.pep Sequence

Translation from 16 to 1924

> BO18018.pep
MIKYRLIAFLAVLLQLHCPTLGQPYPNYHADFVGIGDHGADLKWWQTAAF
YQIYPRSFKDSNGDGVGDLNGIAEQLPYLKELGITATWLSPIFTSPMADF
GYDIANFTEIAPIFGTMADFEHLMEVAKKLDIKIILDFVPNHSSDECEWF
RRSAARDPEFKDFYVWHPGRMENGNRHPPSNWISVFRGSAWQWHEGRQEF
YLHQFVKKQPDLNYRNPKVRETMSNVLRFWLGKGVAGFRIDAVPHVFEIA
PDNQNQYRDEPRNDWDNDPEDYGYLQHIYTKDQPETIDLVYSWRAVLDAH
QREHGGEDRILMAETYSPIDIVMQYYGNATAEGAQLPFNFLLISELSNSS
NAHAYEGTVLKWLQHMPKGRTANWVLGNHDQPRVGSRLGRDRVDMLNMLT
ATLPGASVTYQGEELGMTNVWISWKDTVDPSACNTNPSIYEQYSRDPERT
PFQWTDAQDAGFSNASKTWLPIAVDYKEVNVEQERQKPLSHLNVFKQLWQ
LRKQSQTLKRGETEVKALSDAVLAVKRYLERDSTYLTLLNIYDGVETINL
LQSFPDLPPQLKVVVVTERSQVKVGDLVNSTSLQLQPKDSLVLQTTSSYY
SYATNGETRFLPVLGVYLWLAQVGLYLSSRASFLDH

BO18018.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A5-PA 630 CG30359-PA 1..630 1..630 3389 100 Plus
Mal-A5-PC 611 CG30359-PC 1..611 1..630 3262 97 Plus
Mal-A5-PB 534 CG30359-PB 1..534 97..630 2863 100 Plus
Mal-A4-PA 579 CG8693-PA 24..578 44..598 1899 61 Plus
Mal-A3-PA 574 CG8695-PA 19..573 40..595 1872 62.1 Plus