Clone BO18019 Report

Search the DGRC for BO18019

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG31638-RA
Protein status:BO18019.pep: validated full length
Sequenced Size:2146

Clone Sequence Records

BO18019.3prime Sequence

803 bp (741 high quality bases) assembled on 2006-10-13

> BO18019.3prime
ATGGTCTAGAAAGCTTGCCGGAGTCTCATCGTCGGACACCTTGAGACCAT
CTAGATTAATGCTGTTTCTCGCATATCCAGCGCCTGCAGACTGCTCCTTC
TCGTACAGCTGTCGGTTTAGCTCATCCTTACTGGAAACGGAGCTGCTGCC
TCCATTTGTGGTTCCCTTCAGGGGCAGCGCTAGATTCGCTCGACTGGCAC
TGCTGCCTGCGCTGCCATAACGTCCGTTTCCGGATCGCTGCCTCTGGTGA
TGATGATGGTGCTGTCCGTGAGGATTATCGAATTTCTGCTTGGCCCGCTC
GAACTCCAGATTCCGTGACTTCGACTCAAATATATTCTCCTCCAGATGCG
TGGGCTTGGCATCAAAAAAAGCAGCTGCTGCCGCTGCCGCCGCCGCTGCA
GATGCCGCAGCACTACTCTGCTGCTGCTGCAGGAGCGTTCGTTCCGTGTG
ACTAGATCTCTTTACGGAAGCAGCATGATGCATAGCGGCATCGCTGCCAT
TGTGGGAGCTCCTCAAACCTGCCTGCGAGTCATCAAAGATCTGGCGAAGA
TCATTGATATTCGGCAGACAGTCGTTGGGCAGCTCCACGGCAATCTTATT
CCTCAATTGCACCCCGCCCATGCCCCGCAGCTGGGGACTGGGAGCACGTC
TATTCTGGAGGTGCTGAATCTGCACCTGTAATCCTTCCGTCTGACCCACC
AGCTCATCGTTGGAACGCTGCAAGCGGCGCACTTGGTTAACGGCCGAATC
CAGTTCGTCCTCAGCACCAGCTAACTCCCGCTTCAGCTCCTCCACACGCT
GAC

BO18019.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31638-PA 2115 CG31638-RA 1328..2112 803..19 3925 100 Minus
CG7826-PA 2727 mnb-RA 2242..2268 396..370 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31638-RA 3212 CG31638-RA 1502..2286 803..19 3925 100 Minus
CG31638-RB 2587 CG31638-RB 1502..1657 803..648 780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6495242..6495868 651..25 3135 100 Minus
2L 23513712 2L 6494951..6495104 803..650 770 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:45:23 has no hits.

BO18019.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:07 Download gff for BO18019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31638-PA 1328..2115 18..803 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:03:32 Download gff for BO18019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31638-RA 1502..2291 12..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:58 Download gff for BO18019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31638-RA 1502..2291 12..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:58 Download gff for BO18019.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6494951..6495104 650..803 100 -> Minus
2L 6495244..6495868 25..649 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:03:32 Download gff for BO18019.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6494951..6495104 650..803 100 -> Minus
arm_2L 6495244..6495868 25..649 100   Minus

BO18019.5prime Sequence

874 bp (779 high quality bases) assembled on 2006-10-13

> BO18019.5prime
GAAGTTATCAGTCGACATGTCGCAGACAGCATCCACAACGCAAAGTGTAA
CCGCTGCACCGGCGGGTGGCAGCAGACGCAATGAAGTGGGCGGCGTGGGC
GTCATCGGGACCACCATGTCGGCTAGATATGGAGAAACAGAATGGGAGGC
TCGGGAGTCCCAGCGGCAGAGGGAACTGCACGAAGCTCGAGCACGGGCGG
CGCAGATGGAGAAAACCATGAAGTGGTGGTCCGACTGCACTGCCAACTGG
CGGGAGAAGTGGAGTAAGGTCCGCAACGAGCGGAATAAGGCCAGAGAGGA
GTCCAAGCAGCTGAGCCTCAAACTGGACGGCGTCATGAAGGAGGCCCACT
CGCTGAAGCGGGAGAAGAACGATCTCGAGTTGCAGATCACGCAGCTAAAG
AAGGAGATGGAGAAAGTGCACACGCTGATGATGAAGCACGCCGGTCAGTT
CCATCGAGCCGACACCAGCGAGGATGCGGAGGCCAACGGACGGGATGCCA
ACTGCTCGCCGGATATCTCCTCGGATGGCTTAAAGAATATCAATAGCGAG
GACGGCTTGGTTACCAAGCTGCCCAATGATGTCAAGGATCTAGACATTGA
GGAGTTCGCTATGAAGGGGGCTATGCCCAAACATCTGACCGAGTTGGACG
AAGCGGCGGCTGCCGAGGAGAAGCGCCTGATTCAGCAATTGTCAAAGGAT
GACTTTGACGAAGACTACTTGCTGCAAAAGATATCCATGCTGCAATTGCG
CCTCGACGAGGCTCAGAAAACTCTTCAAGCGGAAAGGGACGAAAAGCTGG
AGCTGCACAAGAGCATTGAGAAACTGACGCTGGAGATCCAGGACGTGCGC
GGACGTCAAGAGGAGATGCGCTCG

BO18019.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31638-PA 2115 CG31638-RA 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31638-RB 2587 CG31638-RB 175..1032 17..874 4290 100 Plus
CG31638-RA 3212 CG31638-RA 175..1032 17..874 4290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6491682..6492204 267..789 2615 100 Plus
2L 23513712 2L 6491235..6491375 17..157 705 100 Plus
2L 23513712 2L 6492260..6492344 790..874 425 100 Plus
2L 23513712 2L 6491433..6491507 156..230 375 100 Plus
2L 23513712 2L 6491567..6491609 228..270 215 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:45:42 has no hits.

BO18019.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:08 Download gff for BO18019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31638-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:03:35 Download gff for BO18019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31638-RA 168..1032 9..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:50 Download gff for BO18019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31638-RA 168..1032 9..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:50 Download gff for BO18019.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6491435..6491505 158..228 100 -> Plus
2L 6491568..6491607 229..268 100 -> Plus
2L 6491228..6491375 9..157 97 -> Plus
2L 6491684..6492204 269..789 100 -> Plus
2L 6492260..6492344 790..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:03:35 Download gff for BO18019.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6491228..6491375 9..157 97 -> Plus
arm_2L 6491435..6491505 158..228 100 -> Plus
arm_2L 6491568..6491607 229..268 100 -> Plus
arm_2L 6491684..6492204 269..789 100 -> Plus
arm_2L 6492260..6492344 790..874 100   Plus

BO18019.complete Sequence

2146 bp assembled on 2006-12-18

GenBank Submission: FJ634283

> BO18019.complete
GAAGTTATCAGTCGACATGTCGCAGACAGCATCCACAACGCAAAGTGTAA
CCGCTGCACCGGCGGGTGGCAGCAGACGCAATGAAGTGGGCGGCGTGGGC
GTCATCGGGACCACCATGTCGGCTAGATATGGAGAAACAGAATGGGAGGC
TCGGGAGTCCCAGCGGCAGAGGGAACTGCACGAAGCTCGAGCACGGGCGG
CGCAGATGGAGAAAACCATGAAGTGGTGGTCCGACTGCACTGCCAACTGG
CGGGAGAAGTGGAGTAAGGTCCGCAACGAGCGGAATAAGGCCAGAGAGGA
GTCCAAGCAGCTGAGCCTCAAACTGGACGGCGTCATGAAGGAGGCCCACT
CGCTGAAGCGGGAGAAGAACGATCTCGAGTTGCAGATCACGCAGCTAAAG
AAGGAGATGGAGAAAGTGCACACGCTGATGATGAAGCACGCCGGTCAGTT
CCATCGAGCCGACACCAGCGAGGATGCGGAGGCCAACGGACGGGATGCCA
ACTGCTCGCCGGATATCTCCTCGGATGGCTTAAAGAATATCAATAGCGAG
GACGGCTTGGTTACCAAGCTGCCCAATGATGTCAAGGATCTAGACATTGA
GGAGTTCGCTATGAAGGGGGCTATGCCCAAACATCTGACCGAGTTGGACG
AAGCGGCGGCTGCCGAGGAGAAGCGCCTGATTCAGCAATTGTCAAAGGAT
GACTTTGACGAAGACTACTTGCTGCAAAAGATATCCATGCTGCAATTGCG
CCTCGACGAGGCTCAGAAAACTCTTCAAGCGGAAAGGGACGAAAAGCTGG
AGCTGCACAAGAGCATTGAGAAACTGACGCTGGAGATCCAGGACGTGCGC
GGACGTCAAGAGGAGATGCGCTCGGCCAAGCAGGAGGCAGTGCGTGAACT
ATTAACTCTTCAAGAACAACATCGTGCTGAGATGCGTATCGTGAATAACT
CGCTGCAGGAGGAGATTGCTGCCCGTGAGAATCTCGAGCGCCGCCTCACG
GAGCTTCGCACTGAACTGGAGCACCTTCAGGCGGAGAACGCCTCCGAATG
GGGCAAGCGCGAGCGACTGGAGTCCGAGAAATTGGCCATGGAGCGTGACA
ACAAGAAACTGCGCGCAGAACTGCGAGATTATCAGGAACGTTCGGACCGT
AAGTGCCGACCCATGCAAGCTAATGACGTGGAGCTGCGAGCATTGCAGCA
GGAACTTTCGGAGCGCAACAAGGAGATCAGCGAGGTGAAGATGTCGCACG
CCAAGCTAAAGAAGTTGCTGGCCGAAACAAACACAGAGCTGGGACACGCC
GTGCGGCGAGCCGAGCAGTATGAGGCGGAGGTGAAGCGTCTGCGTCAGCG
TGTGGAGGAGCTGAAGCGGGAGTTAGCTGGTGCTGAGGACGAACTGGATT
CGGCCGTTAACCAAGTGCGCCGCTTGCAGCGTTCCAACGATGAGCTGGTG
GGTCAGACGGAAGGATTACAGGTGCAGATTCAGCACCTCCAGAATAGACG
TGCTCCCAGTCCCCAGCTGCGGGGCATGGGCGGGGTGCAATTGAGGAATA
AGATTGCCGTGGAGCTGCCCAACGACTGTCTGCCGAATATCAATGATCTT
CGCCAGATCTTTGATGACTCGCAGGCAGGTTTGAGGAGCTCCCACAATGG
CAGCGATGCCGCTATGCATCATGCTGCTTCCGTAAAGAGATCTAGTCACA
CGGAACGAACGCTCCTGCAGCAGCAGCAGAGTAGTGCTGCGGCATCTGCA
GCGGCGGCGGCAGCGGCAGCAGCTGCTTTTTTTGATGCCAAGCCCACGCA
TCTGGAGGAGAATATATTTGAGTCGAAGTCACGGAATCTGGAGTTCGAGC
GGGCCAAGCAGAAATTCGATAATCCTCACGGACAGCACCATCATCATCAC
CAGAGGCAGCGATCCGGAAACGGACGTTATGGCAGCGCAGGCAGCAGTGC
CAGTCGAGCGAATCTAGCGCTGCCCCTGAAGGGAACCACAAATGGAGGCA
GCAGCTCCGTTTCCAGTAAGGATGAGCTAAACCGACAGCTGTACGAGAAG
GAGCAGTCTGCAGGCGCTGGATATGCGAGAAACAGCATTAATCTAGATGG
TCTCAAGGTGTCCGACGATGAGACTCCGGCAAGCTTTCTAGACCAT

BO18019.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31638-RA 2115 CG31638-PA 1..2112 17..2128 10560 100 Plus
CG31638-RB 1545 CG31638-PB 1..1483 17..1499 7415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31638-RA 3212 CG31638-RA 175..2286 17..2128 10560 100 Plus
CG31638-RB 2587 CG31638-RB 175..1657 17..1499 7415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6495242..6495868 1496..2122 3135 100 Plus
2L 23513712 2L 6491682..6492204 267..789 2615 100 Plus
2L 23513712 2L 6492519..6492860 993..1334 1710 100 Plus
2L 23513712 2L 6492260..6492463 790..993 1020 100 Plus
2L 23513712 2L 6494936..6495104 1329..1497 845 100 Plus
2L 23513712 2L 6491235..6491375 17..157 705 100 Plus
2L 23513712 2L 6491433..6491507 156..230 375 100 Plus
2L 23513712 2L 6491567..6491609 228..270 215 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:43:11 has no hits.

BO18019.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:49 Download gff for BO18019.complete
Subject Subject Range Query Range Percent Splice Strand
CG31638-RA 1..2115 17..2129 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:19 Download gff for BO18019.complete
Subject Subject Range Query Range Percent Splice Strand
CG31638-RA 107..2230 9..2135 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:59 Download gff for BO18019.complete
Subject Subject Range Query Range Percent Splice Strand
CG31638-RA 175..2286 17..2130 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:49 Download gff for BO18019.complete
Subject Subject Range Query Range Percent Splice Strand
CG31638-RA 107..2230 9..2135 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:49 Download gff for BO18019.complete
Subject Subject Range Query Range Percent Splice Strand
CG31638-RA 175..2286 17..2130 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:49 Download gff for BO18019.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6491235..6491375 17..157 100 -> Plus
2L 6491435..6491505 158..228 100 -> Plus
2L 6491568..6491607 229..268 100 -> Plus
2L 6491684..6492204 269..789 100 -> Plus
2L 6492260..6492463 790..993 100 -> Plus
2L 6492520..6492856 994..1330 100 -> Plus
2L 6494938..6495104 1331..1497 100 -> Plus
2L 6495244..6495868 1498..2122 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:59 Download gff for BO18019.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6491235..6491375 17..157 100 -> Plus
arm_2L 6491435..6491505 158..228 100 -> Plus
arm_2L 6491568..6491607 229..268 100 -> Plus
arm_2L 6491684..6492204 269..789 100 -> Plus
arm_2L 6492260..6492463 790..993 100 -> Plus
arm_2L 6492520..6492856 994..1330 100 -> Plus
arm_2L 6494938..6495104 1331..1497 100 -> Plus
arm_2L 6495244..6495868 1498..2122 100   Plus

BO18019.pep Sequence

Translation from 16 to 2146

> BO18019.pep
MSQTASTTQSVTAAPAGGSRRNEVGGVGVIGTTMSARYGETEWEARESQR
QRELHEARARAAQMEKTMKWWSDCTANWREKWSKVRNERNKAREESKQLS
LKLDGVMKEAHSLKREKNDLELQITQLKKEMEKVHTLMMKHAGQFHRADT
SEDAEANGRDANCSPDISSDGLKNINSEDGLVTKLPNDVKDLDIEEFAMK
GAMPKHLTELDEAAAAEEKRLIQQLSKDDFDEDYLLQKISMLQLRLDEAQ
KTLQAERDEKLELHKSIEKLTLEIQDVRGRQEEMRSAKQEAVRELLTLQE
QHRAEMRIVNNSLQEEIAARENLERRLTELRTELEHLQAENASEWGKRER
LESEKLAMERDNKKLRAELRDYQERSDRKCRPMQANDVELRALQQELSER
NKEISEVKMSHAKLKKLLAETNTELGHAVRRAEQYEAEVKRLRQRVEELK
RELAGAEDELDSAVNQVRRLQRSNDELVGQTEGLQVQIQHLQNRRAPSPQ
LRGMGGVQLRNKIAVELPNDCLPNINDLRQIFDDSQAGLRSSHNGSDAAM
HHAASVKRSSHTERTLLQQQQSSAAASAAAAAAAAAAFFDAKPTHLEENI
FESKSRNLEFERAKQKFDNPHGQHHHHHQRQRSGNGRYGSAGSSASRANL
ALPLKGTTNGGSSSVSSKDELNRQLYEKEQSAGAGYARNSINLDGLKVSD
DETPASFLDH

BO18019.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31638-PA 704 CG31638-PA 1..704 1..704 3553 100 Plus
CG31638-PB 514 CG31638-PB 1..503 1..509 2480 97.8 Plus
zip-PG 1971 CG15792-PG 1433..1944 53..519 268 21 Plus
zip-PE 1971 CG15792-PE 1433..1944 53..519 268 21 Plus
zip-PC 1971 CG15792-PC 1433..1944 53..519 268 21 Plus
zip-PG 1971 CG15792-PG 1103..1616 32..577 231 20.2 Plus
zip-PE 1971 CG15792-PE 1103..1616 32..577 231 20.2 Plus
zip-PG 1971 CG15792-PG 1240..1846 35..618 194 20.5 Plus
zip-PE 1971 CG15792-PE 1240..1846 35..618 194 20.5 Plus
zip-PG 1971 CG15792-PG 877..1351 47..489 170 20.4 Plus
zip-PE 1971 CG15792-PE 877..1351 47..489 170 20.4 Plus