Clone Sequence Records
BO18019.3prime Sequence
803 bp (741 high quality bases) assembled on 2006-10-13
> BO18019.3prime
ATGGTCTAGAAAGCTTGCCGGAGTCTCATCGTCGGACACCTTGAGACCAT
CTAGATTAATGCTGTTTCTCGCATATCCAGCGCCTGCAGACTGCTCCTTC
TCGTACAGCTGTCGGTTTAGCTCATCCTTACTGGAAACGGAGCTGCTGCC
TCCATTTGTGGTTCCCTTCAGGGGCAGCGCTAGATTCGCTCGACTGGCAC
TGCTGCCTGCGCTGCCATAACGTCCGTTTCCGGATCGCTGCCTCTGGTGA
TGATGATGGTGCTGTCCGTGAGGATTATCGAATTTCTGCTTGGCCCGCTC
GAACTCCAGATTCCGTGACTTCGACTCAAATATATTCTCCTCCAGATGCG
TGGGCTTGGCATCAAAAAAAGCAGCTGCTGCCGCTGCCGCCGCCGCTGCA
GATGCCGCAGCACTACTCTGCTGCTGCTGCAGGAGCGTTCGTTCCGTGTG
ACTAGATCTCTTTACGGAAGCAGCATGATGCATAGCGGCATCGCTGCCAT
TGTGGGAGCTCCTCAAACCTGCCTGCGAGTCATCAAAGATCTGGCGAAGA
TCATTGATATTCGGCAGACAGTCGTTGGGCAGCTCCACGGCAATCTTATT
CCTCAATTGCACCCCGCCCATGCCCCGCAGCTGGGGACTGGGAGCACGTC
TATTCTGGAGGTGCTGAATCTGCACCTGTAATCCTTCCGTCTGACCCACC
AGCTCATCGTTGGAACGCTGCAAGCGGCGCACTTGGTTAACGGCCGAATC
CAGTTCGTCCTCAGCACCAGCTAACTCCCGCTTCAGCTCCTCCACACGCT
GAC
BO18019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31638-PA | 2115 | CG31638-RA | 1328..2112 | 803..19 | 3925 | 100 | Minus |
CG7826-PA | 2727 | mnb-RA | 2242..2268 | 396..370 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31638-RA | 3212 | CG31638-RA | 1502..2286 | 803..19 | 3925 | 100 | Minus |
CG31638-RB | 2587 | CG31638-RB | 1502..1657 | 803..648 | 780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6495242..6495868 | 651..25 | 3135 | 100 | Minus |
2L | 23513712 | 2L | 6494951..6495104 | 803..650 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:45:23 has no hits.
BO18019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:07 Download gff for
BO18019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31638-PA | 1328..2115 | 18..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:03:32 Download gff for
BO18019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31638-RA | 1502..2291 | 12..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:58 Download gff for
BO18019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31638-RA | 1502..2291 | 12..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:58 Download gff for
BO18019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6494951..6495104 | 650..803 | 100 | -> | Minus |
2L | 6495244..6495868 | 25..649 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:03:32 Download gff for
BO18019.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6494951..6495104 | 650..803 | 100 | -> | Minus |
arm_2L | 6495244..6495868 | 25..649 | 100 | | Minus |
BO18019.5prime Sequence
874 bp (779 high quality bases) assembled on 2006-10-13
> BO18019.5prime
GAAGTTATCAGTCGACATGTCGCAGACAGCATCCACAACGCAAAGTGTAA
CCGCTGCACCGGCGGGTGGCAGCAGACGCAATGAAGTGGGCGGCGTGGGC
GTCATCGGGACCACCATGTCGGCTAGATATGGAGAAACAGAATGGGAGGC
TCGGGAGTCCCAGCGGCAGAGGGAACTGCACGAAGCTCGAGCACGGGCGG
CGCAGATGGAGAAAACCATGAAGTGGTGGTCCGACTGCACTGCCAACTGG
CGGGAGAAGTGGAGTAAGGTCCGCAACGAGCGGAATAAGGCCAGAGAGGA
GTCCAAGCAGCTGAGCCTCAAACTGGACGGCGTCATGAAGGAGGCCCACT
CGCTGAAGCGGGAGAAGAACGATCTCGAGTTGCAGATCACGCAGCTAAAG
AAGGAGATGGAGAAAGTGCACACGCTGATGATGAAGCACGCCGGTCAGTT
CCATCGAGCCGACACCAGCGAGGATGCGGAGGCCAACGGACGGGATGCCA
ACTGCTCGCCGGATATCTCCTCGGATGGCTTAAAGAATATCAATAGCGAG
GACGGCTTGGTTACCAAGCTGCCCAATGATGTCAAGGATCTAGACATTGA
GGAGTTCGCTATGAAGGGGGCTATGCCCAAACATCTGACCGAGTTGGACG
AAGCGGCGGCTGCCGAGGAGAAGCGCCTGATTCAGCAATTGTCAAAGGAT
GACTTTGACGAAGACTACTTGCTGCAAAAGATATCCATGCTGCAATTGCG
CCTCGACGAGGCTCAGAAAACTCTTCAAGCGGAAAGGGACGAAAAGCTGG
AGCTGCACAAGAGCATTGAGAAACTGACGCTGGAGATCCAGGACGTGCGC
GGACGTCAAGAGGAGATGCGCTCG
BO18019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31638-PA | 2115 | CG31638-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31638-RB | 2587 | CG31638-RB | 175..1032 | 17..874 | 4290 | 100 | Plus |
CG31638-RA | 3212 | CG31638-RA | 175..1032 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6491682..6492204 | 267..789 | 2615 | 100 | Plus |
2L | 23513712 | 2L | 6491235..6491375 | 17..157 | 705 | 100 | Plus |
2L | 23513712 | 2L | 6492260..6492344 | 790..874 | 425 | 100 | Plus |
2L | 23513712 | 2L | 6491433..6491507 | 156..230 | 375 | 100 | Plus |
2L | 23513712 | 2L | 6491567..6491609 | 228..270 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:45:42 has no hits.
BO18019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:08 Download gff for
BO18019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31638-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:03:35 Download gff for
BO18019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31638-RA | 168..1032 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:50 Download gff for
BO18019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31638-RA | 168..1032 | 9..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:50 Download gff for
BO18019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6491435..6491505 | 158..228 | 100 | -> | Plus |
2L | 6491568..6491607 | 229..268 | 100 | -> | Plus |
2L | 6491228..6491375 | 9..157 | 97 | -> | Plus |
2L | 6491684..6492204 | 269..789 | 100 | -> | Plus |
2L | 6492260..6492344 | 790..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:03:35 Download gff for
BO18019.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6491228..6491375 | 9..157 | 97 | -> | Plus |
arm_2L | 6491435..6491505 | 158..228 | 100 | -> | Plus |
arm_2L | 6491568..6491607 | 229..268 | 100 | -> | Plus |
arm_2L | 6491684..6492204 | 269..789 | 100 | -> | Plus |
arm_2L | 6492260..6492344 | 790..874 | 100 | | Plus |
BO18019.complete Sequence
2146 bp assembled on 2006-12-18
GenBank Submission: FJ634283
> BO18019.complete
GAAGTTATCAGTCGACATGTCGCAGACAGCATCCACAACGCAAAGTGTAA
CCGCTGCACCGGCGGGTGGCAGCAGACGCAATGAAGTGGGCGGCGTGGGC
GTCATCGGGACCACCATGTCGGCTAGATATGGAGAAACAGAATGGGAGGC
TCGGGAGTCCCAGCGGCAGAGGGAACTGCACGAAGCTCGAGCACGGGCGG
CGCAGATGGAGAAAACCATGAAGTGGTGGTCCGACTGCACTGCCAACTGG
CGGGAGAAGTGGAGTAAGGTCCGCAACGAGCGGAATAAGGCCAGAGAGGA
GTCCAAGCAGCTGAGCCTCAAACTGGACGGCGTCATGAAGGAGGCCCACT
CGCTGAAGCGGGAGAAGAACGATCTCGAGTTGCAGATCACGCAGCTAAAG
AAGGAGATGGAGAAAGTGCACACGCTGATGATGAAGCACGCCGGTCAGTT
CCATCGAGCCGACACCAGCGAGGATGCGGAGGCCAACGGACGGGATGCCA
ACTGCTCGCCGGATATCTCCTCGGATGGCTTAAAGAATATCAATAGCGAG
GACGGCTTGGTTACCAAGCTGCCCAATGATGTCAAGGATCTAGACATTGA
GGAGTTCGCTATGAAGGGGGCTATGCCCAAACATCTGACCGAGTTGGACG
AAGCGGCGGCTGCCGAGGAGAAGCGCCTGATTCAGCAATTGTCAAAGGAT
GACTTTGACGAAGACTACTTGCTGCAAAAGATATCCATGCTGCAATTGCG
CCTCGACGAGGCTCAGAAAACTCTTCAAGCGGAAAGGGACGAAAAGCTGG
AGCTGCACAAGAGCATTGAGAAACTGACGCTGGAGATCCAGGACGTGCGC
GGACGTCAAGAGGAGATGCGCTCGGCCAAGCAGGAGGCAGTGCGTGAACT
ATTAACTCTTCAAGAACAACATCGTGCTGAGATGCGTATCGTGAATAACT
CGCTGCAGGAGGAGATTGCTGCCCGTGAGAATCTCGAGCGCCGCCTCACG
GAGCTTCGCACTGAACTGGAGCACCTTCAGGCGGAGAACGCCTCCGAATG
GGGCAAGCGCGAGCGACTGGAGTCCGAGAAATTGGCCATGGAGCGTGACA
ACAAGAAACTGCGCGCAGAACTGCGAGATTATCAGGAACGTTCGGACCGT
AAGTGCCGACCCATGCAAGCTAATGACGTGGAGCTGCGAGCATTGCAGCA
GGAACTTTCGGAGCGCAACAAGGAGATCAGCGAGGTGAAGATGTCGCACG
CCAAGCTAAAGAAGTTGCTGGCCGAAACAAACACAGAGCTGGGACACGCC
GTGCGGCGAGCCGAGCAGTATGAGGCGGAGGTGAAGCGTCTGCGTCAGCG
TGTGGAGGAGCTGAAGCGGGAGTTAGCTGGTGCTGAGGACGAACTGGATT
CGGCCGTTAACCAAGTGCGCCGCTTGCAGCGTTCCAACGATGAGCTGGTG
GGTCAGACGGAAGGATTACAGGTGCAGATTCAGCACCTCCAGAATAGACG
TGCTCCCAGTCCCCAGCTGCGGGGCATGGGCGGGGTGCAATTGAGGAATA
AGATTGCCGTGGAGCTGCCCAACGACTGTCTGCCGAATATCAATGATCTT
CGCCAGATCTTTGATGACTCGCAGGCAGGTTTGAGGAGCTCCCACAATGG
CAGCGATGCCGCTATGCATCATGCTGCTTCCGTAAAGAGATCTAGTCACA
CGGAACGAACGCTCCTGCAGCAGCAGCAGAGTAGTGCTGCGGCATCTGCA
GCGGCGGCGGCAGCGGCAGCAGCTGCTTTTTTTGATGCCAAGCCCACGCA
TCTGGAGGAGAATATATTTGAGTCGAAGTCACGGAATCTGGAGTTCGAGC
GGGCCAAGCAGAAATTCGATAATCCTCACGGACAGCACCATCATCATCAC
CAGAGGCAGCGATCCGGAAACGGACGTTATGGCAGCGCAGGCAGCAGTGC
CAGTCGAGCGAATCTAGCGCTGCCCCTGAAGGGAACCACAAATGGAGGCA
GCAGCTCCGTTTCCAGTAAGGATGAGCTAAACCGACAGCTGTACGAGAAG
GAGCAGTCTGCAGGCGCTGGATATGCGAGAAACAGCATTAATCTAGATGG
TCTCAAGGTGTCCGACGATGAGACTCCGGCAAGCTTTCTAGACCAT
BO18019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31638-RA | 2115 | CG31638-PA | 1..2112 | 17..2128 | 10560 | 100 | Plus |
CG31638-RB | 1545 | CG31638-PB | 1..1483 | 17..1499 | 7415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31638-RA | 3212 | CG31638-RA | 175..2286 | 17..2128 | 10560 | 100 | Plus |
CG31638-RB | 2587 | CG31638-RB | 175..1657 | 17..1499 | 7415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6495242..6495868 | 1496..2122 | 3135 | 100 | Plus |
2L | 23513712 | 2L | 6491682..6492204 | 267..789 | 2615 | 100 | Plus |
2L | 23513712 | 2L | 6492519..6492860 | 993..1334 | 1710 | 100 | Plus |
2L | 23513712 | 2L | 6492260..6492463 | 790..993 | 1020 | 100 | Plus |
2L | 23513712 | 2L | 6494936..6495104 | 1329..1497 | 845 | 100 | Plus |
2L | 23513712 | 2L | 6491235..6491375 | 17..157 | 705 | 100 | Plus |
2L | 23513712 | 2L | 6491433..6491507 | 156..230 | 375 | 100 | Plus |
2L | 23513712 | 2L | 6491567..6491609 | 228..270 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:43:11 has no hits.
BO18019.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:49 Download gff for
BO18019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31638-RA | 1..2115 | 17..2129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:19 Download gff for
BO18019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31638-RA | 107..2230 | 9..2135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:59 Download gff for
BO18019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31638-RA | 175..2286 | 17..2130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:49 Download gff for
BO18019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31638-RA | 107..2230 | 9..2135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:49 Download gff for
BO18019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31638-RA | 175..2286 | 17..2130 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:49 Download gff for
BO18019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6491235..6491375 | 17..157 | 100 | -> | Plus |
2L | 6491435..6491505 | 158..228 | 100 | -> | Plus |
2L | 6491568..6491607 | 229..268 | 100 | -> | Plus |
2L | 6491684..6492204 | 269..789 | 100 | -> | Plus |
2L | 6492260..6492463 | 790..993 | 100 | -> | Plus |
2L | 6492520..6492856 | 994..1330 | 100 | -> | Plus |
2L | 6494938..6495104 | 1331..1497 | 100 | -> | Plus |
2L | 6495244..6495868 | 1498..2122 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:59 Download gff for
BO18019.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6491235..6491375 | 17..157 | 100 | -> | Plus |
arm_2L | 6491435..6491505 | 158..228 | 100 | -> | Plus |
arm_2L | 6491568..6491607 | 229..268 | 100 | -> | Plus |
arm_2L | 6491684..6492204 | 269..789 | 100 | -> | Plus |
arm_2L | 6492260..6492463 | 790..993 | 100 | -> | Plus |
arm_2L | 6492520..6492856 | 994..1330 | 100 | -> | Plus |
arm_2L | 6494938..6495104 | 1331..1497 | 100 | -> | Plus |
arm_2L | 6495244..6495868 | 1498..2122 | 100 | | Plus |
BO18019.pep Sequence
Translation from 16 to 2146
> BO18019.pep
MSQTASTTQSVTAAPAGGSRRNEVGGVGVIGTTMSARYGETEWEARESQR
QRELHEARARAAQMEKTMKWWSDCTANWREKWSKVRNERNKAREESKQLS
LKLDGVMKEAHSLKREKNDLELQITQLKKEMEKVHTLMMKHAGQFHRADT
SEDAEANGRDANCSPDISSDGLKNINSEDGLVTKLPNDVKDLDIEEFAMK
GAMPKHLTELDEAAAAEEKRLIQQLSKDDFDEDYLLQKISMLQLRLDEAQ
KTLQAERDEKLELHKSIEKLTLEIQDVRGRQEEMRSAKQEAVRELLTLQE
QHRAEMRIVNNSLQEEIAARENLERRLTELRTELEHLQAENASEWGKRER
LESEKLAMERDNKKLRAELRDYQERSDRKCRPMQANDVELRALQQELSER
NKEISEVKMSHAKLKKLLAETNTELGHAVRRAEQYEAEVKRLRQRVEELK
RELAGAEDELDSAVNQVRRLQRSNDELVGQTEGLQVQIQHLQNRRAPSPQ
LRGMGGVQLRNKIAVELPNDCLPNINDLRQIFDDSQAGLRSSHNGSDAAM
HHAASVKRSSHTERTLLQQQQSSAAASAAAAAAAAAAFFDAKPTHLEENI
FESKSRNLEFERAKQKFDNPHGQHHHHHQRQRSGNGRYGSAGSSASRANL
ALPLKGTTNGGSSSVSSKDELNRQLYEKEQSAGAGYARNSINLDGLKVSD
DETPASFLDH
BO18019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31638-PA | 704 | CG31638-PA | 1..704 | 1..704 | 3553 | 100 | Plus |
CG31638-PB | 514 | CG31638-PB | 1..503 | 1..509 | 2480 | 97.8 | Plus |
zip-PG | 1971 | CG15792-PG | 1433..1944 | 53..519 | 268 | 21 | Plus |
zip-PE | 1971 | CG15792-PE | 1433..1944 | 53..519 | 268 | 21 | Plus |
zip-PC | 1971 | CG15792-PC | 1433..1944 | 53..519 | 268 | 21 | Plus |
zip-PG | 1971 | CG15792-PG | 1103..1616 | 32..577 | 231 | 20.2 | Plus |
zip-PE | 1971 | CG15792-PE | 1103..1616 | 32..577 | 231 | 20.2 | Plus |
zip-PG | 1971 | CG15792-PG | 1240..1846 | 35..618 | 194 | 20.5 | Plus |
zip-PE | 1971 | CG15792-PE | 1240..1846 | 35..618 | 194 | 20.5 | Plus |
zip-PG | 1971 | CG15792-PG | 877..1351 | 47..489 | 170 | 20.4 | Plus |
zip-PE | 1971 | CG15792-PE | 877..1351 | 47..489 | 170 | 20.4 | Plus |