Clone Sequence Records
BO18020.3prime Sequence
804 bp (667 high quality bases) assembled on 2006-10-13
> BO18020.3prime
ATGGTCTAGAAAGCTTGCTCTAGTGGAGTGTTTGCTTGTGGGCGCCTTTT
CTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGAA
TCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTGC
CAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCCT
CGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCATT
GCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGCC
CACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCTA
TGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATCT
TCGCGTGATACGGAAACCCGTTTGTCGTTGAGATGCATCTGGCCAAAGCT
TGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCAT
AAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGCC
AGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACAG
GCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAGT
TGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCACC
AGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTTT
TAGAATGTCACGTGCGTTTTCGTAGTAGTAGCACTCCGTGCGATTATGCA
GATC
BO18020.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5725-PD | 1206 | fbl-RD | 418..1203 | 804..19 | 3930 | 100 | Minus |
CG5725-PB | 1254 | fbl-RB | 466..1251 | 804..19 | 3930 | 100 | Minus |
CG5725-PA | 1260 | fbl-RA | 472..1257 | 804..19 | 3930 | 100 | Minus |
CG5725-PC | 1206 | fbl-RC | 418..1203 | 804..19 | 3930 | 100 | Minus |
CG5725-PE | 1539 | fbl-RE | 751..1536 | 804..19 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 2352 | CG5725-RG | 833..1618 | 804..19 | 3930 | 100 | Minus |
fbl-RF | 1370 | CG5725-RF | 310..1095 | 804..19 | 3930 | 100 | Minus |
fbl-RE | 2386 | CG5725-RE | 867..1652 | 804..19 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20390885..20391179 | 313..19 | 1475 | 100 | Minus |
3L | 28110227 | 3L | 20390456..20390634 | 627..449 | 895 | 100 | Minus |
3L | 28110227 | 3L | 20390688..20390827 | 450..311 | 700 | 100 | Minus |
3L | 28110227 | 3L | 20390268..20390393 | 751..626 | 630 | 100 | Minus |
3L | 28110227 | 3L | 20390156..20390208 | 804..752 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:44:35 has no hits.
BO18020.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:08 Download gff for
BO18020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PE | 751..1539 | 18..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:33 Download gff for
BO18020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 867..1652 | 19..804 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:54 Download gff for
BO18020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 867..1652 | 19..804 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:54 Download gff for
BO18020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20390458..20390634 | 449..625 | 100 | -> | Minus |
3L | 20390156..20390208 | 752..804 | 100 | -> | Minus |
3L | 20390268..20390393 | 626..751 | 100 | -> | Minus |
3L | 20390690..20390825 | 313..448 | 100 | -> | Minus |
3L | 20390886..20391179 | 19..312 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:33 Download gff for
BO18020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20383256..20383308 | 752..804 | 100 | -> | Minus |
arm_3L | 20383368..20383493 | 626..751 | 100 | -> | Minus |
arm_3L | 20383558..20383734 | 449..625 | 100 | -> | Minus |
arm_3L | 20383790..20383925 | 313..448 | 100 | -> | Minus |
arm_3L | 20383986..20384279 | 19..312 | 100 | | Minus |
BO18020.5prime Sequence
897 bp (754 high quality bases) assembled on 2006-10-13
> BO18020.5prime
GAAGTTATCAGTCGACATGCCGGAGGCGCTACACTTTACATCGATCTTTG
ATCTCATCATCAAGAGCGCGATGCCATGGTTTGGCATGGACATCGGCGGA
ACCCTCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGA
GCAGGATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCA
AAAACTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATG
GACAATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTT
CCAGACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCA
TGGCCGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAG
TTCGAGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGA
CGAGCTGGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATC
GCACGGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAA
AAGCAGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGT
CGGATCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGC
GGATTTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGT
CTACTCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAA
GGGTGACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCG
ATTACAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGC
CAGATGCATCTCAACGACAAACGGGTTTCCGTATCACGCCAAGATCT
BO18020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5725-PA | 1260 | fbl-RA | 1..881 | 17..897 | 4380 | 99.8 | Plus |
CG5725-PB | 1254 | fbl-RB | 46..875 | 68..897 | 4125 | 99.8 | Plus |
CG5725-PE | 1539 | fbl-RE | 332..1160 | 69..897 | 4120 | 99.8 | Plus |
CG5725-PD | 1206 | fbl-RD | 1..827 | 71..897 | 4110 | 99.8 | Plus |
CG5725-PC | 1206 | fbl-RC | 1..827 | 71..897 | 4110 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RA | 1866 | CG5725-RA | 335..1215 | 17..897 | 4390 | 99.9 | Plus |
fbl-RG | 2352 | CG5725-RG | 412..1242 | 67..897 | 4140 | 99.9 | Plus |
fbl-RB | 1910 | CG5725-RB | 426..1259 | 64..897 | 4140 | 99.8 | Plus |
fbl-RG | 2352 | CG5725-RG | 335..386 | 17..68 | 260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20389913..20390208 | 245..540 | 1480 | 100 | Plus |
3L | 28110227 | 3L | 20388668..20388847 | 68..247 | 900 | 100 | Plus |
3L | 28110227 | 3L | 20390456..20390634 | 665..843 | 895 | 100 | Plus |
3L | 28110227 | 3L | 20390268..20390393 | 541..666 | 630 | 100 | Plus |
3L | 28110227 | 3L | 20390688..20390743 | 842..897 | 265 | 98.2 | Plus |
3L | 28110227 | 3L | 20387950..20388001 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:54:15 has no hits.
BO18020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:09 Download gff for
BO18020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:55 Download gff for
BO18020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 331..1215 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:57 Download gff for
BO18020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 331..1215 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:57 Download gff for
BO18020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20387946..20388001 | 9..68 | 93 | -> | Plus |
3L | 20388669..20388847 | 69..247 | 100 | -> | Plus |
3L | 20389916..20390208 | 248..540 | 100 | -> | Plus |
3L | 20390268..20390393 | 541..666 | 100 | -> | Plus |
3L | 20390458..20390634 | 667..843 | 100 | -> | Plus |
3L | 20390690..20390743 | 844..897 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:55 Download gff for
BO18020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20381046..20381101 | 9..68 | 93 | -> | Plus |
arm_3L | 20381769..20381947 | 69..247 | 100 | -> | Plus |
arm_3L | 20383016..20383308 | 248..540 | 100 | -> | Plus |
arm_3L | 20383368..20383493 | 541..666 | 100 | -> | Plus |
arm_3L | 20383558..20383734 | 667..843 | 100 | -> | Plus |
arm_3L | 20383790..20383843 | 844..897 | 98 | | Plus |
BO18020.complete Sequence
1291 bp assembled on 2006-10-11
GenBank Submission: FJ634284
> BO18020.complete
GAAGTTATCAGTCGACATGCCGGAGGCGCTACACTTTACATCGATCTTTG
ATCTCATCATCAAGAGCGCGATGCCATGGTTTGGCATGGACATCGGCGGA
ACCCTCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGA
GCAGGATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCA
AAAACTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATG
GACAATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTT
CCAGACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCA
TGGCCGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAG
TTCGAGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGA
CGAGCTGGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATC
GCACGGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAA
AAGCAGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGT
CGGATCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGC
GGATTTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGT
CTACTCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAA
GGGTGACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCG
ATTACAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGC
CAGATGCATCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGC
CAACGCCACTCTGGTCACCATAACGAATAATATCGGCTCCATAGCAAGGA
TGTGCGCGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGGGCAACTTT
CTGCGAGTTAACCCCATTTCCATGAAGCTGCTGGCGTACGCAATGGAGTT
CTGGTCCAATGGCACAATGAAGGGTCTTTTCCTGGAGCACGAGGGATACT
TTGGGGCTCTGGGTTGCCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCC
CTTAACGACGGAGTGGAGCATTCAATCCACACTGAATCCGATTCAGCAAG
CGAAGCAGCACAGACATCTTCTACGGCGGACGAGCCACCAGAAAAGGCGC
CCACAAGCAAACACTCCACTAGAGCAAGCTTTCTAGACCAT
BO18020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RA | 1260 | CG5725-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
fbl-RG | 1287 | CG5725-PG | 78..1284 | 67..1273 | 6035 | 100 | Plus |
fbl-RB | 1254 | CG5725-PB | 42..1251 | 64..1273 | 6035 | 99.9 | Plus |
fbl-RG | 1287 | CG5725-PG | 1..52 | 17..68 | 260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RA | 1866 | CG5725-RA | 335..1591 | 17..1273 | 6285 | 100 | Plus |
fbl-RG | 2352 | CG5725-RG | 412..1618 | 67..1273 | 6035 | 100 | Plus |
fbl-RB | 1910 | CG5725-RB | 426..1635 | 64..1273 | 6035 | 99.9 | Plus |
fbl-RG | 2352 | CG5725-RG | 335..386 | 17..68 | 260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20389913..20390208 | 245..540 | 1480 | 100 | Plus |
3L | 28110227 | 3L | 20390885..20391179 | 979..1273 | 1475 | 100 | Plus |
3L | 28110227 | 3L | 20388668..20388847 | 68..247 | 900 | 100 | Plus |
3L | 28110227 | 3L | 20390456..20390634 | 665..843 | 895 | 100 | Plus |
3L | 28110227 | 3L | 20390688..20390827 | 842..981 | 700 | 100 | Plus |
3L | 28110227 | 3L | 20390268..20390393 | 541..666 | 630 | 100 | Plus |
3L | 28110227 | 3L | 20387950..20388001 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:41:38 has no hits.
BO18020.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:32 Download gff for
BO18020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 1..1260 | 17..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:48 Download gff for
BO18020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 331..1591 | 9..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:54 Download gff for
BO18020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 335..1591 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:32 Download gff for
BO18020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 331..1591 | 9..1273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:30 Download gff for
BO18020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RA | 335..1591 | 17..1275 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:30 Download gff for
BO18020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20390458..20390634 | 667..843 | 100 | -> | Plus |
3L | 20390690..20390825 | 844..979 | 100 | -> | Plus |
3L | 20387950..20388001 | 17..68 | 100 | -> | Plus |
3L | 20388669..20388847 | 69..247 | 100 | -> | Plus |
3L | 20389916..20390208 | 248..540 | 100 | -> | Plus |
3L | 20390268..20390393 | 541..666 | 100 | -> | Plus |
3L | 20390886..20391179 | 980..1275 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:54 Download gff for
BO18020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20381050..20381101 | 17..68 | 100 | -> | Plus |
arm_3L | 20381769..20381947 | 69..247 | 100 | -> | Plus |
arm_3L | 20383016..20383308 | 248..540 | 100 | -> | Plus |
arm_3L | 20383368..20383493 | 541..666 | 100 | -> | Plus |
arm_3L | 20383558..20383734 | 667..843 | 100 | -> | Plus |
arm_3L | 20383790..20383925 | 844..979 | 100 | -> | Plus |
arm_3L | 20383986..20384279 | 980..1275 | 99 | | Plus |
BO18020.pep Sequence
Translation from 16 to 1291
> BO18020.pep
MPEALHFTSIFDLIIKSAMPWFGMDIGGTLTKLVYFEPKDITPDEQDREA
GILRNIRRYLTKNSAYGKTGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDM
GNFLSLAKQKGMAELVTTVCATGGGAFKFEQDFRDQVNMKLAKFDELDTL
IKGILFADLHNRTECYYYENARDILKSEKQQFNFSQPFPFILVNVGSGVS
ILAVYGPDNYKRISGTSLGGGTFLGLCCLLTGCTSFEEAIQLATKGDNRK
VDKLVKDIYGGDYNRFGLPGDLVASSFGQMHLNDKRVSVSREDLANATLV
TITNNIGSIARMCALNEKIDRVVFVGNFLRVNPISMKLLAYAMEFWSNGT
MKGLFLEHEGYFGALGCLLQFNGELAAALNDGVEHSIHTESDSASEAAQT
SSTADEPPEKAPTSKHSTRASFLDH
BO18020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-PA | 419 | CG5725-PA | 1..419 | 1..419 | 2182 | 100 | Plus |
fbl-PG | 428 | CG5725-PG | 1..428 | 1..419 | 2162 | 97.9 | Plus |
fbl-PB | 417 | CG5725-PB | 16..417 | 18..419 | 2097 | 100 | Plus |
fbl-PC | 401 | CG5725-PC | 1..401 | 19..419 | 2093 | 100 | Plus |
fbl-PD | 401 | CG5725-PD | 1..401 | 19..419 | 2093 | 100 | Plus |