Clone BO18020 Report

Search the DGRC for BO18020

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptfbl-RA
Protein status:BO18020.pep: validated full length
Sequenced Size:1291

Clone Sequence Records

BO18020.3prime Sequence

804 bp (667 high quality bases) assembled on 2006-10-13

> BO18020.3prime
ATGGTCTAGAAAGCTTGCTCTAGTGGAGTGTTTGCTTGTGGGCGCCTTTT
CTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGAA
TCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTGC
CAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCCT
CGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCATT
GCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGCC
CACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCTA
TGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATCT
TCGCGTGATACGGAAACCCGTTTGTCGTTGAGATGCATCTGGCCAAAGCT
TGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCAT
AAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGCC
AGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACAG
GCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAGT
TGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCACC
AGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTTT
TAGAATGTCACGTGCGTTTTCGTAGTAGTAGCACTCCGTGCGATTATGCA
GATC

BO18020.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5725-PD 1206 fbl-RD 418..1203 804..19 3930 100 Minus
CG5725-PB 1254 fbl-RB 466..1251 804..19 3930 100 Minus
CG5725-PA 1260 fbl-RA 472..1257 804..19 3930 100 Minus
CG5725-PC 1206 fbl-RC 418..1203 804..19 3930 100 Minus
CG5725-PE 1539 fbl-RE 751..1536 804..19 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 2352 CG5725-RG 833..1618 804..19 3930 100 Minus
fbl-RF 1370 CG5725-RF 310..1095 804..19 3930 100 Minus
fbl-RE 2386 CG5725-RE 867..1652 804..19 3930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20390885..20391179 313..19 1475 100 Minus
3L 28110227 3L 20390456..20390634 627..449 895 100 Minus
3L 28110227 3L 20390688..20390827 450..311 700 100 Minus
3L 28110227 3L 20390268..20390393 751..626 630 100 Minus
3L 28110227 3L 20390156..20390208 804..752 265 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:44:35 has no hits.

BO18020.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:08 Download gff for BO18020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PE 751..1539 18..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:33 Download gff for BO18020.3prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 867..1652 19..804 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:54 Download gff for BO18020.3prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 867..1652 19..804 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:54 Download gff for BO18020.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20390458..20390634 449..625 100 -> Minus
3L 20390156..20390208 752..804 100 -> Minus
3L 20390268..20390393 626..751 100 -> Minus
3L 20390690..20390825 313..448 100 -> Minus
3L 20390886..20391179 19..312 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:33 Download gff for BO18020.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20383256..20383308 752..804 100 -> Minus
arm_3L 20383368..20383493 626..751 100 -> Minus
arm_3L 20383558..20383734 449..625 100 -> Minus
arm_3L 20383790..20383925 313..448 100 -> Minus
arm_3L 20383986..20384279 19..312 100   Minus

BO18020.5prime Sequence

897 bp (754 high quality bases) assembled on 2006-10-13

> BO18020.5prime
GAAGTTATCAGTCGACATGCCGGAGGCGCTACACTTTACATCGATCTTTG
ATCTCATCATCAAGAGCGCGATGCCATGGTTTGGCATGGACATCGGCGGA
ACCCTCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGA
GCAGGATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCA
AAAACTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATG
GACAATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTT
CCAGACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCA
TGGCCGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAG
TTCGAGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGA
CGAGCTGGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATC
GCACGGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAA
AAGCAGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGT
CGGATCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGC
GGATTTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGT
CTACTCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAA
GGGTGACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCG
ATTACAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGC
CAGATGCATCTCAACGACAAACGGGTTTCCGTATCACGCCAAGATCT

BO18020.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5725-PA 1260 fbl-RA 1..881 17..897 4380 99.8 Plus
CG5725-PB 1254 fbl-RB 46..875 68..897 4125 99.8 Plus
CG5725-PE 1539 fbl-RE 332..1160 69..897 4120 99.8 Plus
CG5725-PD 1206 fbl-RD 1..827 71..897 4110 99.8 Plus
CG5725-PC 1206 fbl-RC 1..827 71..897 4110 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RA 1866 CG5725-RA 335..1215 17..897 4390 99.9 Plus
fbl-RG 2352 CG5725-RG 412..1242 67..897 4140 99.9 Plus
fbl-RB 1910 CG5725-RB 426..1259 64..897 4140 99.8 Plus
fbl-RG 2352 CG5725-RG 335..386 17..68 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20389913..20390208 245..540 1480 100 Plus
3L 28110227 3L 20388668..20388847 68..247 900 100 Plus
3L 28110227 3L 20390456..20390634 665..843 895 100 Plus
3L 28110227 3L 20390268..20390393 541..666 630 100 Plus
3L 28110227 3L 20390688..20390743 842..897 265 98.2 Plus
3L 28110227 3L 20387950..20388001 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:54:15 has no hits.

BO18020.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:09 Download gff for BO18020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:55 Download gff for BO18020.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 331..1215 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:57 Download gff for BO18020.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 331..1215 9..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:57 Download gff for BO18020.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20387946..20388001 9..68 93 -> Plus
3L 20388669..20388847 69..247 100 -> Plus
3L 20389916..20390208 248..540 100 -> Plus
3L 20390268..20390393 541..666 100 -> Plus
3L 20390458..20390634 667..843 100 -> Plus
3L 20390690..20390743 844..897 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:55 Download gff for BO18020.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20381046..20381101 9..68 93 -> Plus
arm_3L 20381769..20381947 69..247 100 -> Plus
arm_3L 20383016..20383308 248..540 100 -> Plus
arm_3L 20383368..20383493 541..666 100 -> Plus
arm_3L 20383558..20383734 667..843 100 -> Plus
arm_3L 20383790..20383843 844..897 98   Plus

BO18020.complete Sequence

1291 bp assembled on 2006-10-11

GenBank Submission: FJ634284

> BO18020.complete
GAAGTTATCAGTCGACATGCCGGAGGCGCTACACTTTACATCGATCTTTG
ATCTCATCATCAAGAGCGCGATGCCATGGTTTGGCATGGACATCGGCGGA
ACCCTCACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGA
GCAGGATCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCA
AAAACTCGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATG
GACAATGTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTT
CCAGACCACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCA
TGGCCGAGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAG
TTCGAGCAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGA
CGAGCTGGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATC
GCACGGAGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAA
AAGCAGCAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGT
CGGATCCGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGC
GGATTTCGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGT
CTACTCACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAA
GGGTGACAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCG
ATTACAACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGC
CAGATGCATCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGC
CAACGCCACTCTGGTCACCATAACGAATAATATCGGCTCCATAGCAAGGA
TGTGCGCGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGGGCAACTTT
CTGCGAGTTAACCCCATTTCCATGAAGCTGCTGGCGTACGCAATGGAGTT
CTGGTCCAATGGCACAATGAAGGGTCTTTTCCTGGAGCACGAGGGATACT
TTGGGGCTCTGGGTTGCCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCC
CTTAACGACGGAGTGGAGCATTCAATCCACACTGAATCCGATTCAGCAAG
CGAAGCAGCACAGACATCTTCTACGGCGGACGAGCCACCAGAAAAGGCGC
CCACAAGCAAACACTCCACTAGAGCAAGCTTTCTAGACCAT

BO18020.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RA 1260 CG5725-PA 1..1257 17..1273 6285 100 Plus
fbl-RG 1287 CG5725-PG 78..1284 67..1273 6035 100 Plus
fbl-RB 1254 CG5725-PB 42..1251 64..1273 6035 99.9 Plus
fbl-RG 1287 CG5725-PG 1..52 17..68 260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RA 1866 CG5725-RA 335..1591 17..1273 6285 100 Plus
fbl-RG 2352 CG5725-RG 412..1618 67..1273 6035 100 Plus
fbl-RB 1910 CG5725-RB 426..1635 64..1273 6035 99.9 Plus
fbl-RG 2352 CG5725-RG 335..386 17..68 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20389913..20390208 245..540 1480 100 Plus
3L 28110227 3L 20390885..20391179 979..1273 1475 100 Plus
3L 28110227 3L 20388668..20388847 68..247 900 100 Plus
3L 28110227 3L 20390456..20390634 665..843 895 100 Plus
3L 28110227 3L 20390688..20390827 842..981 700 100 Plus
3L 28110227 3L 20390268..20390393 541..666 630 100 Plus
3L 28110227 3L 20387950..20388001 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:41:38 has no hits.

BO18020.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:32 Download gff for BO18020.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 1..1260 17..1274 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:48 Download gff for BO18020.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 331..1591 9..1273 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:54 Download gff for BO18020.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 335..1591 17..1275 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:32 Download gff for BO18020.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 331..1591 9..1273 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:30 Download gff for BO18020.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RA 335..1591 17..1275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:30 Download gff for BO18020.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20390458..20390634 667..843 100 -> Plus
3L 20390690..20390825 844..979 100 -> Plus
3L 20387950..20388001 17..68 100 -> Plus
3L 20388669..20388847 69..247 100 -> Plus
3L 20389916..20390208 248..540 100 -> Plus
3L 20390268..20390393 541..666 100 -> Plus
3L 20390886..20391179 980..1275 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:54 Download gff for BO18020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20381050..20381101 17..68 100 -> Plus
arm_3L 20381769..20381947 69..247 100 -> Plus
arm_3L 20383016..20383308 248..540 100 -> Plus
arm_3L 20383368..20383493 541..666 100 -> Plus
arm_3L 20383558..20383734 667..843 100 -> Plus
arm_3L 20383790..20383925 844..979 100 -> Plus
arm_3L 20383986..20384279 980..1275 99   Plus

BO18020.pep Sequence

Translation from 16 to 1291

> BO18020.pep
MPEALHFTSIFDLIIKSAMPWFGMDIGGTLTKLVYFEPKDITPDEQDREA
GILRNIRRYLTKNSAYGKTGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDM
GNFLSLAKQKGMAELVTTVCATGGGAFKFEQDFRDQVNMKLAKFDELDTL
IKGILFADLHNRTECYYYENARDILKSEKQQFNFSQPFPFILVNVGSGVS
ILAVYGPDNYKRISGTSLGGGTFLGLCCLLTGCTSFEEAIQLATKGDNRK
VDKLVKDIYGGDYNRFGLPGDLVASSFGQMHLNDKRVSVSREDLANATLV
TITNNIGSIARMCALNEKIDRVVFVGNFLRVNPISMKLLAYAMEFWSNGT
MKGLFLEHEGYFGALGCLLQFNGELAAALNDGVEHSIHTESDSASEAAQT
SSTADEPPEKAPTSKHSTRASFLDH

BO18020.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-PA 419 CG5725-PA 1..419 1..419 2182 100 Plus
fbl-PG 428 CG5725-PG 1..428 1..419 2162 97.9 Plus
fbl-PB 417 CG5725-PB 16..417 18..419 2097 100 Plus
fbl-PC 401 CG5725-PC 1..401 19..419 2093 100 Plus
fbl-PD 401 CG5725-PD 1..401 19..419 2093 100 Plus