Clone BO18023 Report

Search the DGRC for BO18023

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG5910-RA
Protein status:BO18023.pep: validated full length
Sequenced Size:787

Clone Sequence Records

BO18023.3prime Sequence

780 bp (712 high quality bases) assembled on 2006-10-13

> BO18023.3prime
ATGGTCTAGAAAGCTTGCGCTTTGCCAAAATATTCGTCTCCTTCTTCGGC
AGGTGAGTATACTGAATGCAGAAAGCAGGTTCAATATTAGTAGCACTAAC
ACATTTGGCACGTGCTGGCCACGAGAACTGCCGGAAATGTGACGCCACTT
CTTGATCCAGATCTCAGCACAGCAGCACTCCTTGACCTGGACGAATGTGA
AGCAGGATTCCACGGATGATGTGTGCACCTTCTGATCCGCGAAGCACACG
TGAGGCACATAGGGCAGGCCCTCTTCTCTGTGTTGCAGTTCGCACCAGCA
ATGGTCGTTGATAAACTGACCGCCTAGGCAATACTTTGGTGTATTCGGTG
GGCACTTGATTGAACTGCAGGCATTGTTCTGACCTCTTGAGCCGTTAAAT
TTCTGAATGGACTCCAGGGCCGCTTGCTGGGTCACCTGGTGGTCGAAGGT
GTACTCCTCGTAGCTGTCGCTGTAGGGAGGAAGTCGTGGTCGCAGGTCCT
CCTTGTCGCACATGATGCAGGAGGATTGCGGAGCGGCGAGGGCAGATCCC
AGGCAGATAGTCACCGCAATCCCAATAGACAGGAATGATGGGACGATCGC
GGGCTGATAACGCAAACTGACCTTTGGTGTGAAGCTCTTATCGGTGGATC
TTTCCGCCGGCTGCTGTAATCTCTCGAGGCACTGTCGATCCTCTGCGTCC
AGTTCGAAGCGATCCAAAAGTTCCACATCGTGTGACGTTGTCTGAATTGG
ATGATTTCCATGTGCAGCATTGTCGACTGA

BO18023.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5910-PA 756 CG5910-RA 53..753 719..19 3505 100 Minus
CG5910-PA 756 CG5910-RA 1..55 770..716 275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5910-RB 1148 CG5910-RB 208..961 771..19 3745 99.9 Minus
CG5910-RA 1063 CG5910-RA 123..876 771..19 3745 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20446019..20446401 771..390 1865 99.7 Minus
3L 28110227 3L 20449508..20449636 274..146 645 100 Minus
3L 28110227 3L 20450266..20450393 146..19 640 100 Minus
3L 28110227 3L 20446746..20446819 389..316 370 100 Minus
3L 28110227 3L 20446877..20446922 318..273 230 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:03:13 has no hits.

BO18023.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:11 Download gff for BO18023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5910-PA 1..756 15..770 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:24 Download gff for BO18023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5910-RA 115..888 6..779 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:18 Download gff for BO18023.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5910-RA 115..888 6..779 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:18 Download gff for BO18023.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20449510..20449635 147..272 100 -> Minus
3L 20450266..20450405 6..146 97   Minus
3L 20446011..20446401 390..779 98 -> Minus
3L 20446746..20446819 316..389 100 -> Minus
3L 20446880..20446922 273..315 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:24 Download gff for BO18023.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20442610..20442735 147..272 100 -> Minus
arm_3L 20443366..20443505 6..146 97   Minus
arm_3L 20439111..20439501 390..779 98 -> Minus
arm_3L 20439846..20439919 316..389 100 -> Minus
arm_3L 20439980..20440022 273..315 100 -> Minus

BO18023.5prime Sequence

777 bp (742 high quality bases) assembled on 2006-10-13

> BO18023.5prime
GAAGTTATCAGTCGACATGCTGCACATGGAAATCATCCAATTCAGACAAC
GTCACACGATGTGGAACTTTTTGGATCGCTTCGAACTGGACGCAGAGGAT
CGACAGTGCCTCGAGAGATTACAGCAGCCGGCGGAAAGATCCACCGATAA
GAGCTTCACACCAAAGGTCAGTTTGCGTTATCAGCCCGCGATCGTCCCAT
CATTCCTGTCTATTGGGATTGCGGTGACTATCTGCCTGGGATCTGCCCTC
GCCGCTCCGCAATCCTCCTGCATCATGTGCGACAAGGAGGACCTGCGACC
ACGACTTCCTCCCTACAGCGACAGCTACGAGGAGTACACCTTCGACCACC
AGGTGACCCAGCAAGCGGCCCTGGAGTCCATTCAGAAATTTAACGGCTCA
AGAGGTCAGAACAATGCCTGCAGTTCAATCAAGTGCCCACCGAATACACC
AAAGTATTGCCTAGGCGGTCAGTTTATCAACGACCATTGCTGGTGCGAAC
TGCAACACAGAGAAGAGGGCCTGCCCTATGTGCCTCACGTGTGCTTCGCG
GATCAGAAGGTGCACACATCATCCGTGGAATCCTGCTTCACATTCGTCCA
GGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGGCGTCACA
TTTCCGGCAGTTCTCGTGGCCAGCACGTGCCAAATGTGTTAGTGCTACTA
ATATTGAACCTGCTTTCTGCATTCAGTATACTCACCTGCCGAAGAAGGAG
ACGAATATTTTGGCAAAGCGCAAGCTT

BO18023.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5910-PA 756 CG5910-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5910-RB 1148 CG5910-RB 209..961 17..769 3765 100 Plus
CG5910-RA 1063 CG5910-RA 124..876 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20446020..20446401 17..398 1910 100 Plus
3L 28110227 3L 20449508..20449636 514..642 645 100 Plus
3L 28110227 3L 20450266..20450393 642..769 640 100 Plus
3L 28110227 3L 20446746..20446819 399..472 370 100 Plus
3L 28110227 3L 20446877..20446922 470..515 230 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:12:04 has no hits.

BO18023.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:11 Download gff for BO18023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5910-PA 1..756 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:37 Download gff for BO18023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5910-RA 118..883 11..777 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:20 Download gff for BO18023.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5910-RA 118..883 11..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:20 Download gff for BO18023.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20450266..20450400 642..777 97   Plus
3L 20446014..20446401 11..398 99 -> Plus
3L 20446746..20446819 399..472 100 -> Plus
3L 20446880..20446922 473..515 100 -> Plus
3L 20449510..20449635 516..641 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:37 Download gff for BO18023.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20439114..20439501 11..398 99 -> Plus
arm_3L 20439846..20439919 399..472 100 -> Plus
arm_3L 20439980..20440022 473..515 100 -> Plus
arm_3L 20442610..20442735 516..641 100 -> Plus
arm_3L 20443366..20443500 642..777 97   Plus

BO18023.complete Sequence

787 bp assembled on 2006-10-11

GenBank Submission: FJ634285

> BO18023.complete
GAAGTTATCAGTCGACATGCTGCACATGGAAATCATCCAATTCAGACAAC
GTCACACGATGTGGAACTTTTTGGATCGCTTCGAACTGGACGCAGAGGAT
CGACAGTGCCTCGAGAGATTACAGCAGCCGGCGGAAAGATCCACCGATAA
GAGCTTCACACCAAAGGTCAGTTTGCGTTATCAGCCCGCGATCGTCCCAT
CATTCCTGTCTATTGGGATTGCGGTGACTATCTGCCTGGGATCTGCCCTC
GCCGCTCCGCAATCCTCCTGCATCATGTGCGACAAGGAGGACCTGCGACC
ACGACTTCCTCCCTACAGCGACAGCTACGAGGAGTACACCTTCGACCACC
AGGTGACCCAGCAAGCGGCCCTGGAGTCCATTCAGAAATTTAACGGCTCA
AGAGGTCAGAACAATGCCTGCAGTTCAATCAAGTGCCCACCGAATACACC
AAAGTATTGCCTAGGCGGTCAGTTTATCAACGACCATTGCTGGTGCGAAC
TGCAACACAGAGAAGAGGGCCTGCCCTATGTGCCTCACGTGTGCTTCGCG
GATCAGAAGGTGCACACATCATCCGTGGAATCCTGCTTCACATTCGTCCA
GGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGGCGTCACA
TTTCCGGCAGTTCTCGTGGCCAGCACGTGCCAAATGTGTTAGTGCTACTA
ATATTGAACCTGCTTTCTGCATTCAGTATACTCACCTGCCGAAGAAGGAG
ACGAATATTTTGGCAAAGCGCAAGCTTTCTAGACCAT

BO18023.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5910-RB 756 CG5910-PB 1..753 17..769 3765 100 Plus
CG5910-RA 756 CG5910-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5910-RB 1148 CG5910-RB 209..961 17..769 3765 100 Plus
CG5910-RA 1063 CG5910-RA 124..876 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20446020..20446401 17..398 1910 100 Plus
3L 28110227 3L 20449508..20449636 514..642 645 100 Plus
3L 28110227 3L 20450266..20450393 642..769 640 100 Plus
3L 28110227 3L 20446746..20446819 399..472 370 100 Plus
3L 28110227 3L 20446877..20446922 470..515 230 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:33:48 has no hits.

BO18023.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:28 Download gff for BO18023.complete
Subject Subject Range Query Range Percent Splice Strand
CG5910-RA 1..756 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:03 Download gff for BO18023.complete
Subject Subject Range Query Range Percent Splice Strand
CG5910-RB 203..973 11..782 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:23 Download gff for BO18023.complete
Subject Subject Range Query Range Percent Splice Strand
CG5910-RA 124..876 17..771 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:29 Download gff for BO18023.complete
Subject Subject Range Query Range Percent Splice Strand
CG5910-RA 118..888 11..782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:03 Download gff for BO18023.complete
Subject Subject Range Query Range Percent Splice Strand
CG5910-RA 124..876 17..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:03 Download gff for BO18023.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20446020..20446401 17..398 100 -> Plus
3L 20446746..20446819 399..472 100 -> Plus
3L 20446880..20446922 473..515 100 -> Plus
3L 20449510..20449635 516..641 100 -> Plus
3L 20450266..20450393 642..771 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:23 Download gff for BO18023.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20439120..20439501 17..398 100 -> Plus
arm_3L 20439846..20439919 399..472 100 -> Plus
arm_3L 20439980..20440022 473..515 100 -> Plus
arm_3L 20442610..20442735 516..641 100 -> Plus
arm_3L 20443366..20443493 642..771 98   Plus

BO18023.pep Sequence

Translation from 16 to 787

> BO18023.pep
MLHMEIIQFRQRHTMWNFLDRFELDAEDRQCLERLQQPAERSTDKSFTPK
VSLRYQPAIVPSFLSIGIAVTICLGSALAAPQSSCIMCDKEDLRPRLPPY
SDSYEEYTFDHQVTQQAALESIQKFNGSRGQNNACSSIKCPPNTPKYCLG
GQFINDHCWCELQHREEGLPYVPHVCFADQKVHTSSVESCFTFVQVKECC
CAEIWIKKWRHISGSSRGQHVPNVLVLLILNLLSAFSILTCRRRRRIFWQ
SASFLDH

BO18023.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5910-PB 251 CG5910-PB 1..251 1..251 1365 100 Plus
CG5910-PA 251 CG5910-PA 1..251 1..251 1365 100 Plus