Clone Sequence Records
BO18023.3prime Sequence
780 bp (712 high quality bases) assembled on 2006-10-13
> BO18023.3prime
ATGGTCTAGAAAGCTTGCGCTTTGCCAAAATATTCGTCTCCTTCTTCGGC
AGGTGAGTATACTGAATGCAGAAAGCAGGTTCAATATTAGTAGCACTAAC
ACATTTGGCACGTGCTGGCCACGAGAACTGCCGGAAATGTGACGCCACTT
CTTGATCCAGATCTCAGCACAGCAGCACTCCTTGACCTGGACGAATGTGA
AGCAGGATTCCACGGATGATGTGTGCACCTTCTGATCCGCGAAGCACACG
TGAGGCACATAGGGCAGGCCCTCTTCTCTGTGTTGCAGTTCGCACCAGCA
ATGGTCGTTGATAAACTGACCGCCTAGGCAATACTTTGGTGTATTCGGTG
GGCACTTGATTGAACTGCAGGCATTGTTCTGACCTCTTGAGCCGTTAAAT
TTCTGAATGGACTCCAGGGCCGCTTGCTGGGTCACCTGGTGGTCGAAGGT
GTACTCCTCGTAGCTGTCGCTGTAGGGAGGAAGTCGTGGTCGCAGGTCCT
CCTTGTCGCACATGATGCAGGAGGATTGCGGAGCGGCGAGGGCAGATCCC
AGGCAGATAGTCACCGCAATCCCAATAGACAGGAATGATGGGACGATCGC
GGGCTGATAACGCAAACTGACCTTTGGTGTGAAGCTCTTATCGGTGGATC
TTTCCGCCGGCTGCTGTAATCTCTCGAGGCACTGTCGATCCTCTGCGTCC
AGTTCGAAGCGATCCAAAAGTTCCACATCGTGTGACGTTGTCTGAATTGG
ATGATTTCCATGTGCAGCATTGTCGACTGA
BO18023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5910-PA | 756 | CG5910-RA | 53..753 | 719..19 | 3505 | 100 | Minus |
CG5910-PA | 756 | CG5910-RA | 1..55 | 770..716 | 275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5910-RB | 1148 | CG5910-RB | 208..961 | 771..19 | 3745 | 99.9 | Minus |
CG5910-RA | 1063 | CG5910-RA | 123..876 | 771..19 | 3745 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20446019..20446401 | 771..390 | 1865 | 99.7 | Minus |
3L | 28110227 | 3L | 20449508..20449636 | 274..146 | 645 | 100 | Minus |
3L | 28110227 | 3L | 20450266..20450393 | 146..19 | 640 | 100 | Minus |
3L | 28110227 | 3L | 20446746..20446819 | 389..316 | 370 | 100 | Minus |
3L | 28110227 | 3L | 20446877..20446922 | 318..273 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:03:13 has no hits.
BO18023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:11 Download gff for
BO18023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5910-PA | 1..756 | 15..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:24 Download gff for
BO18023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5910-RA | 115..888 | 6..779 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:18 Download gff for
BO18023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5910-RA | 115..888 | 6..779 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:18 Download gff for
BO18023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20449510..20449635 | 147..272 | 100 | -> | Minus |
3L | 20450266..20450405 | 6..146 | 97 | | Minus |
3L | 20446011..20446401 | 390..779 | 98 | -> | Minus |
3L | 20446746..20446819 | 316..389 | 100 | -> | Minus |
3L | 20446880..20446922 | 273..315 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:24 Download gff for
BO18023.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20442610..20442735 | 147..272 | 100 | -> | Minus |
arm_3L | 20443366..20443505 | 6..146 | 97 | | Minus |
arm_3L | 20439111..20439501 | 390..779 | 98 | -> | Minus |
arm_3L | 20439846..20439919 | 316..389 | 100 | -> | Minus |
arm_3L | 20439980..20440022 | 273..315 | 100 | -> | Minus |
BO18023.5prime Sequence
777 bp (742 high quality bases) assembled on 2006-10-13
> BO18023.5prime
GAAGTTATCAGTCGACATGCTGCACATGGAAATCATCCAATTCAGACAAC
GTCACACGATGTGGAACTTTTTGGATCGCTTCGAACTGGACGCAGAGGAT
CGACAGTGCCTCGAGAGATTACAGCAGCCGGCGGAAAGATCCACCGATAA
GAGCTTCACACCAAAGGTCAGTTTGCGTTATCAGCCCGCGATCGTCCCAT
CATTCCTGTCTATTGGGATTGCGGTGACTATCTGCCTGGGATCTGCCCTC
GCCGCTCCGCAATCCTCCTGCATCATGTGCGACAAGGAGGACCTGCGACC
ACGACTTCCTCCCTACAGCGACAGCTACGAGGAGTACACCTTCGACCACC
AGGTGACCCAGCAAGCGGCCCTGGAGTCCATTCAGAAATTTAACGGCTCA
AGAGGTCAGAACAATGCCTGCAGTTCAATCAAGTGCCCACCGAATACACC
AAAGTATTGCCTAGGCGGTCAGTTTATCAACGACCATTGCTGGTGCGAAC
TGCAACACAGAGAAGAGGGCCTGCCCTATGTGCCTCACGTGTGCTTCGCG
GATCAGAAGGTGCACACATCATCCGTGGAATCCTGCTTCACATTCGTCCA
GGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGGCGTCACA
TTTCCGGCAGTTCTCGTGGCCAGCACGTGCCAAATGTGTTAGTGCTACTA
ATATTGAACCTGCTTTCTGCATTCAGTATACTCACCTGCCGAAGAAGGAG
ACGAATATTTTGGCAAAGCGCAAGCTT
BO18023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5910-PA | 756 | CG5910-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5910-RB | 1148 | CG5910-RB | 209..961 | 17..769 | 3765 | 100 | Plus |
CG5910-RA | 1063 | CG5910-RA | 124..876 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20446020..20446401 | 17..398 | 1910 | 100 | Plus |
3L | 28110227 | 3L | 20449508..20449636 | 514..642 | 645 | 100 | Plus |
3L | 28110227 | 3L | 20450266..20450393 | 642..769 | 640 | 100 | Plus |
3L | 28110227 | 3L | 20446746..20446819 | 399..472 | 370 | 100 | Plus |
3L | 28110227 | 3L | 20446877..20446922 | 470..515 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:12:04 has no hits.
BO18023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:11 Download gff for
BO18023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5910-PA | 1..756 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:37 Download gff for
BO18023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5910-RA | 118..883 | 11..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:20 Download gff for
BO18023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5910-RA | 118..883 | 11..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:20 Download gff for
BO18023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20450266..20450400 | 642..777 | 97 | | Plus |
3L | 20446014..20446401 | 11..398 | 99 | -> | Plus |
3L | 20446746..20446819 | 399..472 | 100 | -> | Plus |
3L | 20446880..20446922 | 473..515 | 100 | -> | Plus |
3L | 20449510..20449635 | 516..641 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:37 Download gff for
BO18023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20439114..20439501 | 11..398 | 99 | -> | Plus |
arm_3L | 20439846..20439919 | 399..472 | 100 | -> | Plus |
arm_3L | 20439980..20440022 | 473..515 | 100 | -> | Plus |
arm_3L | 20442610..20442735 | 516..641 | 100 | -> | Plus |
arm_3L | 20443366..20443500 | 642..777 | 97 | | Plus |
BO18023.complete Sequence
787 bp assembled on 2006-10-11
GenBank Submission: FJ634285
> BO18023.complete
GAAGTTATCAGTCGACATGCTGCACATGGAAATCATCCAATTCAGACAAC
GTCACACGATGTGGAACTTTTTGGATCGCTTCGAACTGGACGCAGAGGAT
CGACAGTGCCTCGAGAGATTACAGCAGCCGGCGGAAAGATCCACCGATAA
GAGCTTCACACCAAAGGTCAGTTTGCGTTATCAGCCCGCGATCGTCCCAT
CATTCCTGTCTATTGGGATTGCGGTGACTATCTGCCTGGGATCTGCCCTC
GCCGCTCCGCAATCCTCCTGCATCATGTGCGACAAGGAGGACCTGCGACC
ACGACTTCCTCCCTACAGCGACAGCTACGAGGAGTACACCTTCGACCACC
AGGTGACCCAGCAAGCGGCCCTGGAGTCCATTCAGAAATTTAACGGCTCA
AGAGGTCAGAACAATGCCTGCAGTTCAATCAAGTGCCCACCGAATACACC
AAAGTATTGCCTAGGCGGTCAGTTTATCAACGACCATTGCTGGTGCGAAC
TGCAACACAGAGAAGAGGGCCTGCCCTATGTGCCTCACGTGTGCTTCGCG
GATCAGAAGGTGCACACATCATCCGTGGAATCCTGCTTCACATTCGTCCA
GGTCAAGGAGTGCTGCTGTGCTGAGATCTGGATCAAGAAGTGGCGTCACA
TTTCCGGCAGTTCTCGTGGCCAGCACGTGCCAAATGTGTTAGTGCTACTA
ATATTGAACCTGCTTTCTGCATTCAGTATACTCACCTGCCGAAGAAGGAG
ACGAATATTTTGGCAAAGCGCAAGCTTTCTAGACCAT
BO18023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5910-RB | 756 | CG5910-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
CG5910-RA | 756 | CG5910-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5910-RB | 1148 | CG5910-RB | 209..961 | 17..769 | 3765 | 100 | Plus |
CG5910-RA | 1063 | CG5910-RA | 124..876 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20446020..20446401 | 17..398 | 1910 | 100 | Plus |
3L | 28110227 | 3L | 20449508..20449636 | 514..642 | 645 | 100 | Plus |
3L | 28110227 | 3L | 20450266..20450393 | 642..769 | 640 | 100 | Plus |
3L | 28110227 | 3L | 20446746..20446819 | 399..472 | 370 | 100 | Plus |
3L | 28110227 | 3L | 20446877..20446922 | 470..515 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:33:48 has no hits.
BO18023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:28 Download gff for
BO18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5910-RA | 1..756 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:03 Download gff for
BO18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5910-RB | 203..973 | 11..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:23 Download gff for
BO18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5910-RA | 124..876 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:29 Download gff for
BO18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5910-RA | 118..888 | 11..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:03 Download gff for
BO18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5910-RA | 124..876 | 17..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:03 Download gff for
BO18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20446020..20446401 | 17..398 | 100 | -> | Plus |
3L | 20446746..20446819 | 399..472 | 100 | -> | Plus |
3L | 20446880..20446922 | 473..515 | 100 | -> | Plus |
3L | 20449510..20449635 | 516..641 | 100 | -> | Plus |
3L | 20450266..20450393 | 642..771 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:23 Download gff for
BO18023.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20439120..20439501 | 17..398 | 100 | -> | Plus |
arm_3L | 20439846..20439919 | 399..472 | 100 | -> | Plus |
arm_3L | 20439980..20440022 | 473..515 | 100 | -> | Plus |
arm_3L | 20442610..20442735 | 516..641 | 100 | -> | Plus |
arm_3L | 20443366..20443493 | 642..771 | 98 | | Plus |
BO18023.pep Sequence
Translation from 16 to 787
> BO18023.pep
MLHMEIIQFRQRHTMWNFLDRFELDAEDRQCLERLQQPAERSTDKSFTPK
VSLRYQPAIVPSFLSIGIAVTICLGSALAAPQSSCIMCDKEDLRPRLPPY
SDSYEEYTFDHQVTQQAALESIQKFNGSRGQNNACSSIKCPPNTPKYCLG
GQFINDHCWCELQHREEGLPYVPHVCFADQKVHTSSVESCFTFVQVKECC
CAEIWIKKWRHISGSSRGQHVPNVLVLLILNLLSAFSILTCRRRRRIFWQ
SASFLDH
BO18023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5910-PB | 251 | CG5910-PB | 1..251 | 1..251 | 1365 | 100 | Plus |
CG5910-PA | 251 | CG5910-PA | 1..251 | 1..251 | 1365 | 100 | Plus |