Clone Sequence Records
BO18030.3prime Sequence
739 bp (737 high quality bases) assembled on 2006-10-13
> BO18030.3prime
ATGGTCTAGAAAGCTTGCAGCGTCGAAATTGTATTCCATTGTGGTTGAAA
ATACACTATTAAATAAATCATCTGAGTCTTTCGGTATGTCCTGCTGAATG
GGCCTAACAATTTGTTGATCATTTCCATGACCAGCAGAATGTATGTTGAT
CCCAACGTTTTCAACAGGGTAATAACGAACGTACTGACTATTGGCAAGAT
CATTATTAGCTTCTTGGAGCTGCCATGGAATGGAATTAACATTTGGATAG
CCTGTCGGAAGCCATTCATAGTTCGGTTGATTCCACTGGTTAAGATACGG
GCCTGCAGAAAGTGTTGGACTTGCGTAAGGAACCTCCTCGCGCTCTTCAG
GCAGCGGCATGTTGACAGTTGTCAAAGTAATCCATTCAATTACGTTAGCC
ACATTTGTATAAACAGCCGGAACGCCAGGCAACCCGCAGTCAACGCCGAA
GTTCACAATGCCAGCCAGTTCGTAGCGCTGCGGATTGTCTTTTATCGCGC
AGGCTAGCGGGGATCCACCGTCACCCTCGCACGAATCTTTTCCAGGCTCA
CCGCCTGCGCACATTAAGCTGTTGTCCAGTTCAAAATCGTTTCCGTAATA
GAGGCGAAGTTGCTGCTCACAGGTACGCCTTTGGACCACCGGCAATGATA
TTTTTTTCAGGACATTCATATAGGAGGGATCGTCAAAGGAATTCTTTCCC
CAGCCCGTAAATATGCACCGGCTAAAGTCAAAATTCTTT
BO18030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18477-PA | 1395 | CG18477-RA | 672..1392 | 739..19 | 3605 | 100 | Minus |
| CG31780-PB | 1395 | CG31780-RB | 672..1392 | 739..19 | 3605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18477-RA | 1483 | CG18477-RA | 677..1397 | 739..19 | 3605 | 100 | Minus |
| CG31780-RB | 1483 | CG31780-RB | 677..1397 | 739..19 | 3605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15661947..15662667 | 739..19 | 3605 | 100 | Minus |
| 2L | 23513712 | 2L | 15696944..15697664 | 739..19 | 3605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:18:33 has no hits.
BO18030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:18 Download gff for
BO18030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-PB | 672..1395 | 15..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:14 Download gff for
BO18030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 677..1403 | 11..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:25 Download gff for
BO18030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 677..1403 | 11..739 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:25 Download gff for
BO18030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15661947..15662673 | 11..739 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:14 Download gff for
BO18030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15661947..15662673 | 11..739 | 99 | | Minus |
BO18030.5prime Sequence
847 bp (767 high quality bases) assembled on 2006-10-13
> BO18030.5prime
GAAGTTATCAGTCGACATGGATTCAATGTACGGAATTATTGCAATAGTGT
CGCTCATCCTGGTCGCTGGTCAAGTCCAGGCACAGGGCCAGAACGCGGAA
CTTAATCAAAGTTGCGGTGCATCAAATGAGCACCAATGCGTCCCGCGTCA
TATGTGCAAGGTCAAAATTGAGTTTCGAATGGCAATGACATACCGCAACC
TAGGATGTGTTTCAACTGCGATTTGCTGCCCCAAGAACCTAATAATCAAG
GAGCCTAGACTTATCATTAATGAACCGATAACTGATCCCCAGTGCGGATT
TGTCAACTCGAAAGGTGTGACCTTCTCATTTAGAGAGGAGGATACGGGCT
TGGCCCAGGAGGCGGAGGTACCATGGATGGTGGCCTTGCTGGATGCCAGA
ACCAGCAGCTATGTGGCCGGTGGCGCCCTCATCGCTCCACATGTAGTGAT
CACGGCCAGGCAAAGAACCGAAAACATGACCGCAAGCCAGCTTGTTGTGC
GAGCTGGCGAATGGGACTTCAGCACCAAAACCGAGCAGCTTCCTTCTGTG
GACGTTCCTATTCGGTCAATTGTCCGTCATCCTGGCTTCAATTTAGAGAA
TGGGGCCAATAATGTGGCCCTTGTGTTTCTTCGCAGATCGCTCACCAGCT
CGCGCCACATAAATCCAATATGTATGCCGTCGGCTCCAAAGAATTTTGAC
TTTAGCCGGTGCATATTTACGGGCTGGGGAAAGAATTCCTTTGACGATCC
CTCCTATATGAATGTCCTGAAAAAAATATCATTGCCGGTGGTCCAAAGGC
GTACCTGTGAGCAGCAACTTCGCCTCTATTACGGAAACGATTTTGAA
BO18030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18477-PA | 1395 | CG18477-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
| CG31780-PB | 1395 | CG31780-RB | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18477-RA | 1483 | CG18477-RA | 6..836 | 17..847 | 4155 | 100 | Plus |
| CG31780-RB | 1483 | CG31780-RB | 6..836 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15661504..15662106 | 245..847 | 3015 | 100 | Plus |
| 2L | 23513712 | 2L | 15696501..15697103 | 245..847 | 3015 | 100 | Plus |
| 2L | 23513712 | 2L | 15661046..15661273 | 17..244 | 1140 | 100 | Plus |
| 2L | 23513712 | 2L | 15696043..15696270 | 17..244 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:50:35 has no hits.
BO18030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:19 Download gff for
BO18030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-PB | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:39 Download gff for
BO18030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 1..836 | 13..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:44 Download gff for
BO18030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 1..836 | 13..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:44 Download gff for
BO18030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15661037..15661273 | 6..244 | 97 | -> | Plus |
| 2L | 15661504..15662106 | 245..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:39 Download gff for
BO18030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15661037..15661273 | 6..244 | 97 | -> | Plus |
| arm_2L | 15661504..15662106 | 245..847 | 100 | | Plus |
BO18030.complete Sequence
1426 bp assembled on 2006-10-11
GenBank Submission: FJ634287
> BO18030.complete
GAAGTTATCAGTCGACATGGATTCAATGTACGGAATTATTGCAATAGTGT
CGCTCATCCTGGTCGCTGGTCAAGTCCAGGCACAGGGCCAGAACGCGGAA
CTTAATCAAAGTTGCGGTGCATCAAATGAGCACCAATGCGTCCCGCGTCA
TATGTGCAAGGTCAAAATTGAGTTTCGAATGGCAATGACATACCGCAACC
TAGGATGTGTTTCAACTGCGATTTGCTGCCCCAAGAACCTAATAATCAAG
GAGCCTAGACTTATCATTAATGAACCGATAACTGATCCCCAGTGCGGATT
TGTCAACTCGAAAGGTGTGACCTTCTCATTTAGAGAGGAGGATACGGGCT
TGGCCCAGGAGGCGGAGGTACCATGGATGGTGGCCTTGCTGGATGCCAGA
ACCAGCAGCTATGTGGCCGGTGGCGCCCTCATCGCTCCACATGTAGTGAT
CACGGCCAGGCAAAGAACCGAAAACATGACCGCAAGCCAGCTTGTTGTGC
GAGCTGGCGAATGGGACTTCAGCACCAAAACCGAGCAGCTTCCTTCTGTG
GACGTTCCTATTCGGTCAATTGTCCGTCATCCTGGCTTCAATTTAGAGAA
TGGGGCCAATAATGTGGCCCTTGTGTTTCTTCGCAGATCGCTCACCAGCT
CGCGCCACATAAATCCAATATGTATGCCGTCGGCTCCAAAGAATTTTGAC
TTTAGCCGGTGCATATTTACGGGCTGGGGAAAGAATTCCTTTGACGATCC
CTCCTATATGAATGTCCTGAAAAAAATATCATTGCCGGTGGTCCAAAGGC
GTACCTGTGAGCAGCAACTTCGCCTCTATTACGGAAACGATTTTGAACTG
GACAACAGCTTAATGTGCGCAGGCGGTGAGCCTGGAAAAGATTCGTGCGA
GGGTGACGGTGGATCCCCGCTAGCCTGCGCGATAAAAGACAATCCGCAGC
GCTACGAACTGGCTGGCATTGTGAACTTCGGCGTTGACTGCGGGTTGCCT
GGCGTTCCGGCTGTTTATACAAATGTGGCTAACGTAATTGAATGGATTAC
TTTGACAACTGTCAACATGCCGCTGCCTGAAGAGCGCGAGGAGGTTCCTT
ACGCAAGTCCAACACTTTCTGCAGGCCCGTATCTTAACCAGTGGAATCAA
CCGAACTATGAATGGCTTCCGACAGGCTATCCAAATGTTAATTCCATTCC
ATGGCAGCTCCAAGAAGCTAATAATGATCTTGCCAATAGTCAGTACGTTC
GTTATTACCCTGTTGAAAACGTTGGGATCAACATACATTCTGCTGGTCAT
GGAAATGATCAACAAATTGTTAGGCCCATTCAGCAGGACATACCGAAAGA
CTCAGATGATTTATTTAATAGTGTATTTTCAACCACAATGGAATACAATT
TCGACGCTGCAAGCTTTCTAGACCAT
BO18030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18477-RA | 1395 | CG18477-PA | 1..1392 | 17..1408 | 6960 | 100 | Plus |
| CG31780-RB | 1395 | CG31780-PB | 1..1392 | 17..1408 | 6960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18477-RA | 1483 | CG18477-RA | 6..1397 | 17..1408 | 6960 | 100 | Plus |
| CG31780-RB | 1483 | CG31780-RB | 6..1397 | 17..1408 | 6960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15661504..15662667 | 245..1408 | 5820 | 100 | Plus |
| 2L | 23513712 | 2L | 15696501..15697664 | 245..1408 | 5820 | 100 | Plus |
| 2L | 23513712 | 2L | 15661046..15661273 | 17..244 | 1140 | 100 | Plus |
| 2L | 23513712 | 2L | 15696043..15696270 | 17..244 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:19:26 has no hits.
BO18030.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:59 Download gff for
BO18030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 1..1395 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:25 Download gff for
BO18030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 1..1395 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:54 Download gff for
BO18030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 6..1397 | 17..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:00 Download gff for
BO18030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 1..1395 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:41 Download gff for
BO18030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31780-RB | 6..1397 | 17..1410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:41 Download gff for
BO18030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15661046..15661273 | 17..244 | 100 | -> | Plus |
| 2L | 15661504..15662667 | 245..1410 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:54 Download gff for
BO18030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15661046..15661273 | 17..244 | 100 | -> | Plus |
| arm_2L | 15661504..15662667 | 245..1410 | 99 | | Plus |
BO18030.pep Sequence
Translation from 16 to 1426
> BO18030.pep
MDSMYGIIAIVSLILVAGQVQAQGQNAELNQSCGASNEHQCVPRHMCKVK
IEFRMAMTYRNLGCVSTAICCPKNLIIKEPRLIINEPITDPQCGFVNSKG
VTFSFREEDTGLAQEAEVPWMVALLDARTSSYVAGGALIAPHVVITARQR
TENMTASQLVVRAGEWDFSTKTEQLPSVDVPIRSIVRHPGFNLENGANNV
ALVFLRRSLTSSRHINPICMPSAPKNFDFSRCIFTGWGKNSFDDPSYMNV
LKKISLPVVQRRTCEQQLRLYYGNDFELDNSLMCAGGEPGKDSCEGDGGS
PLACAIKDNPQRYELAGIVNFGVDCGLPGVPAVYTNVANVIEWITLTTVN
MPLPEEREEVPYASPTLSAGPYLNQWNQPNYEWLPTGYPNVNSIPWQLQE
ANNDLANSQYVRYYPVENVGINIHSAGHGNDQQIVRPIQQDIPKDSDDLF
NSVFSTTMEYNFDAASFLDH
BO18030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18477-PA | 464 | CG18477-PA | 1..464 | 1..464 | 2477 | 100 | Plus |
| CG31780-PB | 464 | CG31780-PB | 1..464 | 1..464 | 2477 | 100 | Plus |
| CG4793-PD | 910 | CG4793-PD | 4..335 | 8..344 | 784 | 47.1 | Plus |
| CG5390-PB | 406 | CG5390-PB | 62..390 | 24..344 | 558 | 38.3 | Plus |
| CG14990-PA | 322 | CG14990-PA | 41..297 | 86..344 | 554 | 43.5 | Plus |
