Clone BO18034 Report

Search the DGRC for BO18034

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG5043-RA
Protein status:BO18034.pep: validated full length
Sequenced Size:1531

Clone Sequence Records

BO18034.3prime Sequence

652 bp (641 high quality bases) assembled on 2006-10-13

> BO18034.3prime
ATGGTCTAGAAAGCTTGCATCTTTGCCTTTGTCGCCCTCCTGAAGATCTT
TAAAACTATCTTCATTGTTCAATTCATTTTGCGAGCCGCGTACAAAAAAG
CCCTTCAGCCTGTTAACGGCTCCTGGAAGCGAAGGTCCTGGAGGCGGAGT
ACCTGGTAGCATATAGTGGGCTACAAAGTGCAGCATGCGATAGGTGGCAT
GCTGATAGGCCTGACTTTGGGCGAAGCATTGGCGAATCCTTTGGCCCAAG
GTGGCGGCCAAGCAATTCTGGAGGGTAACCAGTTGCTCCTCCTTTTCTGC
GATCGCTTGCTCTAGTTTTAACGTTTGTTCAAGCAATTTGCTGAACTGCT
CATCAGATCCCCGCTTGAGATCCTGCACTTTGGCCAAGCTGTCGCGTAAC
TGGTCAACAAAGTCACTCTTAAGGGCCAGTTCGATTCGGAGCAGATTCAG
TTGGCGGAGCAGTTCATCCTGAGCGGTTTGGCTCTCCTGGTACTCGCGCT
GCAACCGGGTCAACTCCTCAAGCTGCTGTCCCTGTTGGCCATGCACCTGA
AAGAGTTCGCTCTTCAGTTGCTGCTGCATTTCCTGGAGATTCTCAATATC
CCGATCCTTGGTTGCCACCTCTTCGGCAAGCTTTCTCCTTTTCGTTTCTG
AT

BO18034.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-PA 1500 CG5043-RA 865..1497 652..19 3105 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-RA 1758 CG5043-RA 977..1609 652..19 3130 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17435328..17435651 342..19 1605 99.7 Minus
2L 23513712 2L 17434959..17435269 652..341 1510 99.7 Minus
Blast to na_te.dros performed 2015-02-13 00:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6925 593..457 106 55.9 Minus

BO18034.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:22 Download gff for BO18034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-PA 865..1500 18..652 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:42:39 Download gff for BO18034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 977..1609 19..652 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:48 Download gff for BO18034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 977..1609 19..652 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:48 Download gff for BO18034.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17434959..17435269 341..652 99 -> Minus
2L 17435330..17435651 19..340 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:42:39 Download gff for BO18034.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17434959..17435269 341..652 99 -> Minus
arm_2L 17435330..17435651 19..340 99   Minus

BO18034.5prime Sequence

656 bp (654 high quality bases) assembled on 2006-10-13

> BO18034.5prime
GAAGTTATCAGTCGACATGTTTCCGAAAAGTCCACGAATTCGCCAGGTCA
ACCAGGCTGGTTTGACCAGAATCCCTCAGAAGGGATCGCCCAGAACCCTT
TACTCCAAATCACTTCTTTCTGCACAGGCAAAGAAGCGCCGCATTTTGGG
ACAGCGGAACTTGAAGAAGGATAATGCCTCAGTAGACAAAAACAAGCAAC
AGTTGCAAAAAATACCCGAGACGGGCCTACTCACACCCTCCTCCTCGGAC
AACTCCTTGACCACCACAGGGTCTAGCTCTGGCCAATCTAGCTGTTCGGC
TATGGCAAAGACCAGTTTGCTCCGAGAGCCCACCTCCTTGACCCCCTATT
TGACTCTCAAGCGTCAGCAGACCTCGACATTGATTAATTTTCGGGTGCGC
AAATCGCTTTCTCAAATGGATTTCAAGGAGGCGCGTCGCACGGGAAACTA
TCAGTTGGTGGCCCATGTGGGATCGCCCAGAAAGTCTGTTCAGCAAATGT
CACAGAAAGTCGATGGCGATTTGGGATTGGAGGCCAATATGGCCAAGTTG
CTGCTTCAGGACAATGCACTAATTGAAGGTGAGATGAGCTTTGTGGTCGG
TCCAGATCAGGATGCCCGAGTGGCCAGCTTGAGAATCTTTAACACCATTA
TGCTAC

BO18034.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-PA 1500 CG5043-RA 1..640 17..656 3150 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-RA 1758 CG5043-RA 113..752 17..656 3170 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17434198..17434676 178..656 2365 99.6 Plus
2L 23513712 2L 17433974..17434134 17..177 805 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:13:25 has no hits.

BO18034.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:22 Download gff for BO18034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-PA 1..640 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:12 Download gff for BO18034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 108..752 8..656 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:01 Download gff for BO18034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 108..752 8..656 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:01 Download gff for BO18034.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17433969..17434134 8..177 97 -> Plus
2L 17434198..17434676 178..656 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:12 Download gff for BO18034.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17433969..17434134 8..177 97 -> Plus
arm_2L 17434198..17434676 178..656 99   Plus

BO18034.complete Sequence

1531 bp assembled on 2007-03-23

GenBank Submission: FJ634290

> BO18034.complete
GAAGTTATCAGTCGACATGTTTCCGAAAAGTCCACGAATTCGCCAGGTCA
ACCAGGCTGGTTTGACCAGAATCCCTCAGAAGGGATCGCCCAGAACCCTT
TACTCCAAATCACTTCTTTCTGCACAGGCAAAGAAGCGCCGCATTTTGGG
ACAGCGGAACTTGAAGAAGGATAATGCCTCAGTAGACAAAAACAAGCAAC
AGTTGCAAAAAATACCCGAGACGGGCCTACTCACACCCTCCTCCTCGGAC
AACTCCTTGACCACCACAGGGTCTAGCTCTGGCCAATCTAGCTGTTCGGC
TATGGCAAAGACCAGTTTGCTCCGAGAGCCCACCTCCTTGACCCCCTATT
TGACTCTCAAGCGTCAGCAGACCTCGACATTGATTAATTTTCGGGTGCGC
AAATCGCTTTCTCAAATGGATTTCAAGGAGGCGCGTCGCACGGGAAACTA
TCAGTTGGTGGCCCATGTGGGATCGCCCAGAAAGTCTGTTCAGCAAATGT
CACAGAAAGTCGATGGCGATTTGGGATTGGAGGCCAATATGGCCAAGTTG
CTGCTTCAGGACAATGCACTAATTGAAGGTGAGATGAGCTTTGTGGTCGG
TCCAGATCAGGATGCCCGAGTGGCCAGCTTGAGAATCTTTAACACCATTA
TGCTACACGCTTGGCGCAGGAGGCGGGAGGAGGTTCGTCAGCTGACCGAT
CAGGTGGAGGACTACAAGAAAAGTTTGGTTAAAAATCGCAACCAATTGCA
TGTCTACAATTCGCTCTTCTCCGTGGAGAAGCGTCGCAATGAAACCTTAA
ATGATCAGCTTAGGCAGTCCTATCGCGAAAATGCTCAGACGAAACTCTCC
TACGAGGAACTAAATGCCGTGCTGGTGCAGATCAGAAACGAAAAGGAGAA
GCTTGCCGAAGAGGTGGCAACCAAGGATCGGGATATTGAGAATCTCCAGG
AAATGCAGCAGCAACTGAAGAGCGAACTCTTTCAGGTGCATGGCCAACAG
GGACAGCAGCTTGAGGAGTTGACCCGGTTGCAGCGCGAGTACCAGGAGAG
CCAAACCGCTCAGGATGAACTGCTCCGCCAACTGAATCTGCTCCGAATCG
AACTGGCCCTTAAGAGTGACTTTGTTGACCAGTTACGCGACAGCTTGGCC
AAAGTGCAGGATCTCAAGCGGGGATCTGATGAGCAGTTCAGCAAATTGCT
TGAACAAACGTTAAAACTAGAGCAAGCGATCGCAGAAAAGGAGGAGCAAC
TGGTTACCCTCCAGAATTGCTTGGCCGCCACCTTGGGCCAAAGGATTCGC
CAATGCTTCGCCCAAAGTCAGGCCTATCAGCATGCCACCTATCGCATGCT
GCACTTTGTAGCCCACTATATGCTACCAGGTACTCCGCCTCCAGGACCTT
CGCTTCCAGGAGCCGTTAACAGGCTGAAGGGCTTTTTTGTACGCGGCTCG
CAAAATGAATTGAACAATGAAGATAGTTTTAAAGATCTTCAGGAGGGCGA
CAAAGGCAAAGATGCAAGCTTTCTAGACCAT

BO18034.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-RA 1500 CG5043-PA 1..1497 17..1513 7440 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-RA 1758 CG5043-RA 113..1609 17..1513 7440 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17434198..17434744 178..724 2705 99.6 Plus
2L 23513712 2L 17434803..17435269 725..1191 2335 100 Plus
2L 23513712 2L 17435328..17435651 1190..1513 1605 99.7 Plus
2L 23513712 2L 17433974..17434134 17..177 805 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:54:50 has no hits.

BO18034.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:42 Download gff for BO18034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 1..1500 17..1514 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:55 Download gff for BO18034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 108..1612 8..1514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:18 Download gff for BO18034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 119..1609 23..1515 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:42 Download gff for BO18034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 108..1612 8..1514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:45 Download gff for BO18034.complete
Subject Subject Range Query Range Percent Splice Strand
CG5043-RA 119..1609 23..1515 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:45 Download gff for BO18034.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17433980..17434134 23..177 100 -> Plus
2L 17434198..17434744 178..724 99 -> Plus
2L 17434803..17435269 725..1191 100 -> Plus
2L 17435330..17435651 1192..1515 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:18 Download gff for BO18034.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17433980..17434134 23..177 100 -> Plus
arm_2L 17434198..17434744 178..724 99 -> Plus
arm_2L 17434803..17435269 725..1191 100 -> Plus
arm_2L 17435330..17435651 1192..1515 99   Plus

BO18034.pep Sequence

Translation from 16 to 1531

> BO18034.pep
MFPKSPRIRQVNQAGLTRIPQKGSPRTLYSKSLLSAQAKKRRILGQRNLK
KDNASVDKNKQQLQKIPETGLLTPSSSDNSLTTTGSSSGQSSCSAMAKTS
LLREPTSLTPYLTLKRQQTSTLINFRVRKSLSQMDFKEARRTGNYQLVAH
VGSPRKSVQQMSQKVDGDLGLEANMAKLLLQDNALIEGEMSFVVGPDQDA
RVASLRIFNTIMLHAWRRRREEVRQLTDQVEDYKKSLVKNRNQLHVYNSL
FSVEKRRNETLNDQLRQSYRENAQTKLSYEELNAVLVQIRNEKEKLAEEV
ATKDRDIENLQEMQQQLKSELFQVHGQQGQQLEELTRLQREYQESQTAQD
ELLRQLNLLRIELALKSDFVDQLRDSLAKVQDLKRGSDEQFSKLLEQTLK
LEQAIAEKEEQLVTLQNCLAATLGQRIRQCFAQSQAYQHATYRMLHFVAH
YMLPGTPPPGPSLPGAVNRLKGFFVRGSQNELNNEDSFKDLQEGDKGKDA
SFLDH

BO18034.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5043-PA 499 CG5043-PA 1..499 1..499 2499 100 Plus
CG5050-PB 327 CG5050-PB 33..193 198..358 236 31.1 Plus
CG5050-PA 327 CG5050-PA 33..193 198..358 236 31.1 Plus
CG12693-PB 425 CG12693-PB 124..384 187..430 210 24.5 Plus