Clone Sequence Records
BO18034.3prime Sequence
652 bp (641 high quality bases) assembled on 2006-10-13
> BO18034.3prime
ATGGTCTAGAAAGCTTGCATCTTTGCCTTTGTCGCCCTCCTGAAGATCTT
TAAAACTATCTTCATTGTTCAATTCATTTTGCGAGCCGCGTACAAAAAAG
CCCTTCAGCCTGTTAACGGCTCCTGGAAGCGAAGGTCCTGGAGGCGGAGT
ACCTGGTAGCATATAGTGGGCTACAAAGTGCAGCATGCGATAGGTGGCAT
GCTGATAGGCCTGACTTTGGGCGAAGCATTGGCGAATCCTTTGGCCCAAG
GTGGCGGCCAAGCAATTCTGGAGGGTAACCAGTTGCTCCTCCTTTTCTGC
GATCGCTTGCTCTAGTTTTAACGTTTGTTCAAGCAATTTGCTGAACTGCT
CATCAGATCCCCGCTTGAGATCCTGCACTTTGGCCAAGCTGTCGCGTAAC
TGGTCAACAAAGTCACTCTTAAGGGCCAGTTCGATTCGGAGCAGATTCAG
TTGGCGGAGCAGTTCATCCTGAGCGGTTTGGCTCTCCTGGTACTCGCGCT
GCAACCGGGTCAACTCCTCAAGCTGCTGTCCCTGTTGGCCATGCACCTGA
AAGAGTTCGCTCTTCAGTTGCTGCTGCATTTCCTGGAGATTCTCAATATC
CCGATCCTTGGTTGCCACCTCTTCGGCAAGCTTTCTCCTTTTCGTTTCTG
AT
BO18034.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-PA | 1500 | CG5043-RA | 865..1497 | 652..19 | 3105 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-RA | 1758 | CG5043-RA | 977..1609 | 652..19 | 3130 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17435328..17435651 | 342..19 | 1605 | 99.7 | Minus |
2L | 23513712 | 2L | 17434959..17435269 | 652..341 | 1510 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-13 00:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6925 | 593..457 | 106 | 55.9 | Minus |
BO18034.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:22 Download gff for
BO18034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-PA | 865..1500 | 18..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:42:39 Download gff for
BO18034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 977..1609 | 19..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:48 Download gff for
BO18034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 977..1609 | 19..652 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:48 Download gff for
BO18034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17434959..17435269 | 341..652 | 99 | -> | Minus |
2L | 17435330..17435651 | 19..340 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:42:39 Download gff for
BO18034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17434959..17435269 | 341..652 | 99 | -> | Minus |
arm_2L | 17435330..17435651 | 19..340 | 99 | | Minus |
BO18034.5prime Sequence
656 bp (654 high quality bases) assembled on 2006-10-13
> BO18034.5prime
GAAGTTATCAGTCGACATGTTTCCGAAAAGTCCACGAATTCGCCAGGTCA
ACCAGGCTGGTTTGACCAGAATCCCTCAGAAGGGATCGCCCAGAACCCTT
TACTCCAAATCACTTCTTTCTGCACAGGCAAAGAAGCGCCGCATTTTGGG
ACAGCGGAACTTGAAGAAGGATAATGCCTCAGTAGACAAAAACAAGCAAC
AGTTGCAAAAAATACCCGAGACGGGCCTACTCACACCCTCCTCCTCGGAC
AACTCCTTGACCACCACAGGGTCTAGCTCTGGCCAATCTAGCTGTTCGGC
TATGGCAAAGACCAGTTTGCTCCGAGAGCCCACCTCCTTGACCCCCTATT
TGACTCTCAAGCGTCAGCAGACCTCGACATTGATTAATTTTCGGGTGCGC
AAATCGCTTTCTCAAATGGATTTCAAGGAGGCGCGTCGCACGGGAAACTA
TCAGTTGGTGGCCCATGTGGGATCGCCCAGAAAGTCTGTTCAGCAAATGT
CACAGAAAGTCGATGGCGATTTGGGATTGGAGGCCAATATGGCCAAGTTG
CTGCTTCAGGACAATGCACTAATTGAAGGTGAGATGAGCTTTGTGGTCGG
TCCAGATCAGGATGCCCGAGTGGCCAGCTTGAGAATCTTTAACACCATTA
TGCTAC
BO18034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-PA | 1500 | CG5043-RA | 1..640 | 17..656 | 3150 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-RA | 1758 | CG5043-RA | 113..752 | 17..656 | 3170 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17434198..17434676 | 178..656 | 2365 | 99.6 | Plus |
2L | 23513712 | 2L | 17433974..17434134 | 17..177 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:13:25 has no hits.
BO18034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:22 Download gff for
BO18034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-PA | 1..640 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:12 Download gff for
BO18034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 108..752 | 8..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:01 Download gff for
BO18034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 108..752 | 8..656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:01 Download gff for
BO18034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17433969..17434134 | 8..177 | 97 | -> | Plus |
2L | 17434198..17434676 | 178..656 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:12 Download gff for
BO18034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17433969..17434134 | 8..177 | 97 | -> | Plus |
arm_2L | 17434198..17434676 | 178..656 | 99 | | Plus |
BO18034.complete Sequence
1531 bp assembled on 2007-03-23
GenBank Submission: FJ634290
> BO18034.complete
GAAGTTATCAGTCGACATGTTTCCGAAAAGTCCACGAATTCGCCAGGTCA
ACCAGGCTGGTTTGACCAGAATCCCTCAGAAGGGATCGCCCAGAACCCTT
TACTCCAAATCACTTCTTTCTGCACAGGCAAAGAAGCGCCGCATTTTGGG
ACAGCGGAACTTGAAGAAGGATAATGCCTCAGTAGACAAAAACAAGCAAC
AGTTGCAAAAAATACCCGAGACGGGCCTACTCACACCCTCCTCCTCGGAC
AACTCCTTGACCACCACAGGGTCTAGCTCTGGCCAATCTAGCTGTTCGGC
TATGGCAAAGACCAGTTTGCTCCGAGAGCCCACCTCCTTGACCCCCTATT
TGACTCTCAAGCGTCAGCAGACCTCGACATTGATTAATTTTCGGGTGCGC
AAATCGCTTTCTCAAATGGATTTCAAGGAGGCGCGTCGCACGGGAAACTA
TCAGTTGGTGGCCCATGTGGGATCGCCCAGAAAGTCTGTTCAGCAAATGT
CACAGAAAGTCGATGGCGATTTGGGATTGGAGGCCAATATGGCCAAGTTG
CTGCTTCAGGACAATGCACTAATTGAAGGTGAGATGAGCTTTGTGGTCGG
TCCAGATCAGGATGCCCGAGTGGCCAGCTTGAGAATCTTTAACACCATTA
TGCTACACGCTTGGCGCAGGAGGCGGGAGGAGGTTCGTCAGCTGACCGAT
CAGGTGGAGGACTACAAGAAAAGTTTGGTTAAAAATCGCAACCAATTGCA
TGTCTACAATTCGCTCTTCTCCGTGGAGAAGCGTCGCAATGAAACCTTAA
ATGATCAGCTTAGGCAGTCCTATCGCGAAAATGCTCAGACGAAACTCTCC
TACGAGGAACTAAATGCCGTGCTGGTGCAGATCAGAAACGAAAAGGAGAA
GCTTGCCGAAGAGGTGGCAACCAAGGATCGGGATATTGAGAATCTCCAGG
AAATGCAGCAGCAACTGAAGAGCGAACTCTTTCAGGTGCATGGCCAACAG
GGACAGCAGCTTGAGGAGTTGACCCGGTTGCAGCGCGAGTACCAGGAGAG
CCAAACCGCTCAGGATGAACTGCTCCGCCAACTGAATCTGCTCCGAATCG
AACTGGCCCTTAAGAGTGACTTTGTTGACCAGTTACGCGACAGCTTGGCC
AAAGTGCAGGATCTCAAGCGGGGATCTGATGAGCAGTTCAGCAAATTGCT
TGAACAAACGTTAAAACTAGAGCAAGCGATCGCAGAAAAGGAGGAGCAAC
TGGTTACCCTCCAGAATTGCTTGGCCGCCACCTTGGGCCAAAGGATTCGC
CAATGCTTCGCCCAAAGTCAGGCCTATCAGCATGCCACCTATCGCATGCT
GCACTTTGTAGCCCACTATATGCTACCAGGTACTCCGCCTCCAGGACCTT
CGCTTCCAGGAGCCGTTAACAGGCTGAAGGGCTTTTTTGTACGCGGCTCG
CAAAATGAATTGAACAATGAAGATAGTTTTAAAGATCTTCAGGAGGGCGA
CAAAGGCAAAGATGCAAGCTTTCTAGACCAT
BO18034.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-RA | 1500 | CG5043-PA | 1..1497 | 17..1513 | 7440 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-RA | 1758 | CG5043-RA | 113..1609 | 17..1513 | 7440 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17434198..17434744 | 178..724 | 2705 | 99.6 | Plus |
2L | 23513712 | 2L | 17434803..17435269 | 725..1191 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 17435328..17435651 | 1190..1513 | 1605 | 99.7 | Plus |
2L | 23513712 | 2L | 17433974..17434134 | 17..177 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:54:50 has no hits.
BO18034.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:42 Download gff for
BO18034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 1..1500 | 17..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:55 Download gff for
BO18034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 108..1612 | 8..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:18 Download gff for
BO18034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 119..1609 | 23..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:42 Download gff for
BO18034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 108..1612 | 8..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:45 Download gff for
BO18034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5043-RA | 119..1609 | 23..1515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:45 Download gff for
BO18034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17433980..17434134 | 23..177 | 100 | -> | Plus |
2L | 17434198..17434744 | 178..724 | 99 | -> | Plus |
2L | 17434803..17435269 | 725..1191 | 100 | -> | Plus |
2L | 17435330..17435651 | 1192..1515 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:18 Download gff for
BO18034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17433980..17434134 | 23..177 | 100 | -> | Plus |
arm_2L | 17434198..17434744 | 178..724 | 99 | -> | Plus |
arm_2L | 17434803..17435269 | 725..1191 | 100 | -> | Plus |
arm_2L | 17435330..17435651 | 1192..1515 | 99 | | Plus |
BO18034.pep Sequence
Translation from 16 to 1531
> BO18034.pep
MFPKSPRIRQVNQAGLTRIPQKGSPRTLYSKSLLSAQAKKRRILGQRNLK
KDNASVDKNKQQLQKIPETGLLTPSSSDNSLTTTGSSSGQSSCSAMAKTS
LLREPTSLTPYLTLKRQQTSTLINFRVRKSLSQMDFKEARRTGNYQLVAH
VGSPRKSVQQMSQKVDGDLGLEANMAKLLLQDNALIEGEMSFVVGPDQDA
RVASLRIFNTIMLHAWRRRREEVRQLTDQVEDYKKSLVKNRNQLHVYNSL
FSVEKRRNETLNDQLRQSYRENAQTKLSYEELNAVLVQIRNEKEKLAEEV
ATKDRDIENLQEMQQQLKSELFQVHGQQGQQLEELTRLQREYQESQTAQD
ELLRQLNLLRIELALKSDFVDQLRDSLAKVQDLKRGSDEQFSKLLEQTLK
LEQAIAEKEEQLVTLQNCLAATLGQRIRQCFAQSQAYQHATYRMLHFVAH
YMLPGTPPPGPSLPGAVNRLKGFFVRGSQNELNNEDSFKDLQEGDKGKDA
SFLDH
BO18034.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5043-PA | 499 | CG5043-PA | 1..499 | 1..499 | 2499 | 100 | Plus |
CG5050-PB | 327 | CG5050-PB | 33..193 | 198..358 | 236 | 31.1 | Plus |
CG5050-PA | 327 | CG5050-PA | 33..193 | 198..358 | 236 | 31.1 | Plus |
CG12693-PB | 425 | CG12693-PB | 124..384 | 187..430 | 210 | 24.5 | Plus |