Clone Sequence Records
BO18035.3prime Sequence
872 bp (793 high quality bases) assembled on 2006-10-13
> BO18035.3prime
ATGGTCTAGAAAGCTTGCTGGAGAACGGATGATGGCCTCGTAGGCGGCGA
AGATTATGTTGGCCACCTCCACGGAGCGCGATTTGAGGCTGAGAGTGGCT
TCCGGATTGCCCGGCTGCAGCTTTAGCTCCAGCAGCACCCAAATGTTGTT
GGTCAGCTTGAGTGACTGGTAGAGCATGTCCTGGCCCTCGACGTTACGCT
TGGCGATGGTGAAGATGTTGTTGGTGGTCATCTTGGAGGCGATGCCGTCG
GTAGTGCCAATTACACCGCTCAGGGTGTACTGCAGTTCGTTGGCGGCGGG
GATCTCCTTCCAGGTGTTGAGGAACACGCGCTTGTCCAACTGCCCATCCT
CGGCGAACAGCACGTTGCCGTGCACCAGGCACGCGAAGTAGAAGATGTCG
ATGTTGTTCTTCACGGCCACCTGCAAGTTGTTGAGCGGCTCCATGCGCTG
AATGGGTCCGTTGGTGCCCAAGGCCATGCTGACCTCGATCGATTGGTTGG
GTGGAAGGGGAGCAGCCTGCATGGGCGACGCGGGCACCAGGCCGAAGCTG
TTCTTGTTCAGTTGGATGGCGAAGTTAGTCATCGGCTGCATGGCTTTGTT
GGTCAGAGTCATGTCCATGAACACCTCGCCGTTGCGGCGTGAGAACGTTC
CTTGTATTTCGAGTCCCTTGCCCTTCTCCGCTGGCAGCCATGTGACCTTG
GGAATCTGAACACCCACCGATAGCGTTGCTCCGCCCAGTCCAAAAATGTC
GCCTAGCAGGCTGGTGGCACCGCCGGGAGCCGCCTCTGCTGGCGGTCCAC
CGAGGAGTATATCAAGACCGCCGCCCAGAAGGTCCCCATTGCTGGTGGCG
GCCGGAGCAGATGGCATGGCGG
BO18035.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12532-PA | 2766 | Bap-RA | 1910..2763 | 872..19 | 4245 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1-2beta-RA | 3228 | CG12532-RA | 2021..2874 | 872..19 | 4255 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19733374..19734227 | 872..19 | 4255 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:11:43 has no hits.
BO18035.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:23 Download gff for
BO18035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12532-PA | 1910..2766 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:24:50 Download gff for
BO18035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 2021..2883 | 9..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:05 Download gff for
BO18035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 2021..2883 | 9..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:05 Download gff for
BO18035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19733374..19734236 | 9..872 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:24:50 Download gff for
BO18035.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19627407..19628269 | 9..872 | 99 | | Minus |
BO18035.5prime Sequence
913 bp (769 high quality bases) assembled on 2006-10-13
> BO18035.5prime
GAAGTTATCAGTCGACATGACTGATTCCAAGTACTTCACCACCACCAAGA
AGGGCGAGATCTTCGAGCTCAAGTCGGAGCTGAATAACGACAAGAAGGAG
AAGAAGAAGGAGGCGGTGAAGAAGGTGATCGCCAGCATGACCGTGGGCAA
AGACGTGTCCGCCCTCTTCCCGGACGTGGTCAACTGCATGCAGACGGACA
ACCTGGAGCTGAAGAAGCTGGTCTACCTTTATCTGATGAACTACGCCAAA
TCGCAGCCGGACATGGCCATCATGGCGGTTAATACGTTCGTGAAGGACTG
CGAGGACTCCAATCCGCTTATCCGGGCGCTGGCCGTGCGCACCATGGGCT
GCATTCGGGTGGACAAGATCACCGAGTACCTGTGCGAGCCGCTGCGCAAG
TGCCTGAAGGACGAGGATCCGTATGTGCGCAAGACGGCCGCAGTGTGCGT
GGCCAAGCTGTACGACATTTCAGCCACAATGGTGGAGGACCAAGGCTTTC
TGGACCAACTGAAGGATCTGCTATCTGACTCGAATCCCATGGTGGTGGCC
AATGCGGTGGCCGCTCTTAGCGAGATTAACGAGGCAAGTCAGTCCGGCCA
GCCCCTCGTGGAGATGAACTCGGTCACCATTAACAAGCTGCTGACGGCGC
TCAACGAGTGCACCGAGTGGGGCCAGGTCTTTATCCTGGACTCGCTGGCC
AACTACAGCCCGAAGGATGAGCGCGAGGCGCAGTCCATCTGCGAGCGAAT
CACTCCGCGTCTGGCTCACGCCAACGCCGCCGTCGTTTTGAGCGCCGTCA
AGGTGCTGATGAAGTTGCTCGAGATGCTGTCCAGCGACAGCGACTTTTGC
GCCACGCTCACCAAGAAGCTGGCTCCGCCATTGTTTACGTTGCTCTCCTC
AGAGCCGGAGGTG
BO18035.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12532-PA | 2766 | Bap-RA | 1..897 | 17..913 | 4460 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1-2beta-RA | 3228 | CG12532-RA | 112..1008 | 17..913 | 4470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19731400..19732296 | 17..913 | 4470 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:40:55 has no hits.
BO18035.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:23 Download gff for
BO18035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12532-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:17 Download gff for
BO18035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 104..1008 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:54 Download gff for
BO18035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 104..1008 | 9..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:54 Download gff for
BO18035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19731395..19732296 | 11..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:17 Download gff for
BO18035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19625428..19626329 | 11..913 | 99 | | Plus |
BO18035.complete Sequence
2797 bp assembled on 2007-03-23
GenBank Submission: FJ634291
> BO18035.complete
GAAGTTATCAGTCGACATGACTGATTCCAAGTACTTCACCACCACCAAGA
AGGGCGAGATCTTCGAGCTCAAGTCGGAGCTGAATAACGACAAGAAGGAG
AAGAAGAAGGAGGCGGTGAAGAAGGTGATCGCCAGCATGACCGTGGGCAA
AGACGTGTCCGCCCTCTTCCCGGACGTGGTCAACTGCATGCAGACGGACA
ACCTGGAGCTGAAGAAGCTGGTCTACCTTTATCTGATGAACTACGCCAAA
TCGCAGCCGGACATGGCCATCATGGCGGTTAATACGTTCGTGAAGGACTG
CGAGGACTCCAATCCGCTTATCCGGGCGCTGGCCGTGCGCACCATGGGCT
GCATTCGGGTGGACAAGATCACCGAGTACCTGTGCGAGCCGCTGCGCAAG
TGCCTGAAGGACGAGGATCCGTATGTGCGCAAGACGGCCGCAGTGTGCGT
GGCCAAGCTGTACGACATTTCAGCCACAATGGTGGAGGACCAAGGCTTTC
TGGACCAACTGAAGGATCTGCTATCTGACTCGAATCCCATGGTGGTGGCC
AATGCGGTGGCCGCTCTTAGCGAGATTAACGAGGCAAGTCAGTCCGGCCA
GCCCCTCGTGGAGATGAACTCGGTCACCATTAACAAGCTGCTGACGGCGC
TCAACGAGTGCACCGAGTGGGGCCAGGTCTTTATCCTGGACTCGCTGGCC
AACTACAGCCCGAAGGATGAGCGCGAGGCGCAGTCCATCTGCGAGCGAAT
CACTCCGCGTCTGGCTCACGCCAACGCCGCCGTCGTTTTGAGCGCCGTCA
AGGTGCTGATGAAGTTGCTCGAGATGCTGTCCAGCGACAGCGACTTTTGC
GCCACGCTCACCAAGAAGCTGGCTCCGCCATTGGTTACGTTGCTCTCCTC
AGAGCCGGAGGTGCAGTATGTGGCCCTGCGCAACATCAATCTGATTGTCC
AGAAGCGGCCAGACATTCTCAAGCACGAAATGAAGGTGTTCTTCGTGAAA
TACAACGATCCCATTTACGTGAAACTGGAGAAGCTAGACATTATGATCCG
CCTGGCCAACCAGAGCAACATCGCCCAGGTGCTTAGCGAGCTGAAGGAGT
ACGCCACCGAGGTGGACGTGGATTTTGTGCGCAAGGCAGTCCGCGCCATC
GGGCGATGCGCCATTAAGGTGGAGCCCTCAGCCGAACGCTGCGTGTCCAC
GCTGCTTGATCTTATCCAGACCAAGGTCAACTACGTGGTGCAGGAGGCCA
TTGTGGTCATCAAGGACATCTTCCGCAAGTACCCCAACAAGTACGAGAGC
ATTATCAGCACGCTGTGCGAGAATCTGGACACTCTGGACGAGCCGGAGGC
ACGCGCATCAATGGTTTGGATCATTGGCGAGTACGCAGAGCGCATTGACA
ACGCGGACGAGCTGCTTGACAGCTTCCTTGAAGGATTCCAGGATGAAAAT
GCACAGGTGCAGTTGCAGCTGCTGACGGCCGTGGTTAAGTTGTTCCTCAA
GCGCCCGTCGGACACCCAGGAGCTGGTGCAGCACGTACTATCATTGGCTA
CCCAGGATTCGGACAACCCCGATCTGCGTGACCGTGGCTTCATCTACTGG
CGTCTCCTGTCCACGGACCCGGCCGCCGCCAAGGAGGTGGTGCTGGCCGA
TAAGCCACTCATCTCAGAGGAGACCGACCTTTTGGAGCCGACATTGCTGG
ACGAGCTCATCTGCCACATTAGCTCGCTGGCCAGCGTTTATCATAAGCCT
CCCACCGCGTTCGTGGAGGGTCGCGGAGCCGGTGTGCGCAAGTCGCTGCC
CAACCGAGCCGCTGGATCTGCAGCTGGTGCAGAGCAAGCAGAAAACGCAG
CCGGCTCAGAGGCAATGGTCATTCCCAACCAGGAGTCGCTCATTGGAGAT
CTGCTCTCCATGGATATCAACGCACCCGCCATGCCATCTGCTCCGGCCGC
CACCAGCAATGTGGACCTTCTGGGCGGCGGTCTTGATATACTCCTCGGTG
GACCGCCAGCAGAGGCGGCTCCCGGCGGTGCCACCAGCCTGCTAGGCGAC
ATTTTTGGACTGGGCGGAGCAACGCTATCGGTGGGTGTTCAGATTCCCAA
GGTCACATGGCTGCCAGCGGAGAAGGGCAAGGGACTCGAAATACAAGGAA
CGTTCTCACGCCGCAACGGCGAGGTGTTCATGGACATGACTCTGACCAAC
AAAGCCATGCAGCCGATGACTAACTTCGCCATCCAACTGAACAAGAACAG
CTTCGGCCTGGTGCCCGCGTCGCCCATGCAGGCTGCTCCCCTTCCACCCA
ACCAATCGATCGAGGTCAGCATGGCCTTGGGCACCAACGGACCCATTCAG
CGCATGGAGCCGCTCAACAACTTGCAGGTGGCCGTGAAGAACAACATCGA
CATCTTCTACTTCGCGTGCCTGGTGCACGGCAACGTGCTGTTCGCCGAGG
ATGGGCAGTTGGACAAGCGCGTGTTCCTCAACACCTGGAAGGAGATCCCC
GCCGCCAACGAACTGCAGTACACCCTGAGCGGTGTAATTGGCACTACCGA
CGGCATCGCCTCCAAGATGACCACCAACAACATCTTCACCATCGCCAAGC
GTAACGTCGAGGGCCAGGACATGCTCTACCAGTCACTCAAGCTGACCAAC
AACATTTGGGTGCTGCTGGAGCTAAAGCTGCAGCCGGGCAATCCGGAAGC
CACTCTCAGCCTCAAATCGCGCTCCGTGGAGGTGGCCAACATAATCTTCG
CCGCCTACGAGGCCATCATCCGTTCTCCAGCAAGCTTTCTAGACCAT
BO18035.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1-2beta-RA | 2766 | CG12532-PA | 1..2763 | 17..2779 | 13815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1-2beta-RA | 3228 | CG12532-RA | 112..2874 | 17..2779 | 13815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19731400..19732825 | 17..1442 | 7130 | 100 | Plus |
| X | 23542271 | X | 19732886..19734227 | 1438..2779 | 6710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:59:53 has no hits.
BO18035.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:49 Download gff for
BO18035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap-RA | 1..2766 | 17..2783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:18 Download gff for
BO18035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap-RA | 105..2884 | 9..2789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:52 Download gff for
BO18035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 112..2874 | 17..2781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:49 Download gff for
BO18035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap-RA | 105..2884 | 9..2789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:20 Download gff for
BO18035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1-2beta-RA | 112..2874 | 17..2781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:20 Download gff for
BO18035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19731400..19732824 | 17..1441 | 100 | -> | Plus |
| X | 19732890..19734227 | 1442..2781 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:52 Download gff for
BO18035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19625433..19626857 | 17..1441 | 100 | -> | Plus |
| arm_X | 19626923..19628260 | 1442..2781 | 99 | | Plus |
BO18035.pep Sequence
Translation from 16 to 2797
> BO18035.pep
MTDSKYFTTTKKGEIFELKSELNNDKKEKKKEAVKKVIASMTVGKDVSAL
FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNP
LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYD
ISATMVEDQGFLDQLKDLLSDSNPMVVANAVAALSEINEASQSGQPLVEM
NSVTINKLLTALNECTEWGQVFILDSLANYSPKDEREAQSICERITPRLA
HANAAVVLSAVKVLMKLLEMLSSDSDFCATLTKKLAPPLVTLLSSEPEVQ
YVALRNINLIVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIMIRLANQS
NIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEPSAERCVSTLLDLI
QTKVNYVVQEAIVVIKDIFRKYPNKYESIISTLCENLDTLDEPEARASMV
WIIGEYAERIDNADELLDSFLEGFQDENAQVQLQLLTAVVKLFLKRPSDT
QELVQHVLSLATQDSDNPDLRDRGFIYWRLLSTDPAAAKEVVLADKPLIS
EETDLLEPTLLDELICHISSLASVYHKPPTAFVEGRGAGVRKSLPNRAAG
SAAGAEQAENAAGSEAMVIPNQESLIGDLLSMDINAPAMPSAPAATSNVD
LLGGGLDILLGGPPAEAAPGGATSLLGDIFGLGGATLSVGVQIPKVTWLP
AEKGKGLEIQGTFSRRNGEVFMDMTLTNKAMQPMTNFAIQLNKNSFGLVP
ASPMQAAPLPPNQSIEVSMALGTNGPIQRMEPLNNLQVAVKNNIDIFYFA
CLVHGNVLFAEDGQLDKRVFLNTWKEIPAANELQYTLSGVIGTTDGIASK
MTTNNIFTIAKRNVEGQDMLYQSLKLTNNIWVLLELKLQPGNPEATLSLK
SRSVEVANIIFAAYEAIIRSPASFLDH
BO18035.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1-2beta-PA | 921 | CG12532-PA | 1..921 | 1..921 | 4641 | 100 | Plus |
| rb-PC | 1160 | CG11427-PC | 342..717 | 247..615 | 418 | 30.8 | Plus |
| rb-PD | 1160 | CG11427-PD | 342..717 | 247..615 | 418 | 30.8 | Plus |
| rb-PA | 1160 | CG11427-PA | 342..717 | 247..615 | 418 | 30.8 | Plus |
| rb-PC | 1160 | CG11427-PC | 47..253 | 17..231 | 353 | 37.7 | Plus |
| rb-PD | 1160 | CG11427-PD | 47..253 | 17..231 | 353 | 37.7 | Plus |
| rb-PA | 1160 | CG11427-PA | 47..253 | 17..231 | 353 | 37.7 | Plus |
| g-PB | 1034 | CG10986-PB | 33..537 | 3..503 | 219 | 18.6 | Plus |
