Clone Sequence Records
BO18038.3prime Sequence
713 bp (706 high quality bases) assembled on 2006-10-13
> BO18038.3prime
ATGGTCTAGAAAGCTTGCATTTTTTTTGGTATGTAACTCGATCCAGTTCG
CAAAGTGAATGACGTTTGTGTAGACAGTAGGGCCAAAGCAGTGAACCGCA
CCATAGCTGACCACCCCGAAGAGTATCACTCTTCTTTCCGATCCAATCCG
TACCCTCGCCGTTAGGGGTCCACCCGAATCACCCTGGCAAGTGGAACCAG
TGCTGCTAGCTACGCAGATGTGGCTTTTGTCCAGTTGTTTGCCAAAGACT
TGGGCACAGTAGCTGAGGTGGTGATGCGTCAAGGATGCTTGCTGCAGGAC
GGGGCTGTTTATGCGGGATTCAGTGCGTCCCCATCCGGTGGTATTGAACT
TGACAAGATTTTTCAGTATGTTCGACGACCAGGTGTAGTCTCCCATTAGC
AAACAGATCGATCTTATGTTATCTCCATACTGTACTGTTGTCTCTAGTCT
GAGCAGAGCTATGTCATTCTTACGAAAGTTAGTGTAATGACTGGGCACAT
AAGTTCTGGTCACATTGATTTCCCTGGGCCGTGGAATGCAGCCATAACTG
GAGCAATCGACGGCCTGATTCACGTCGTAATCACCCAAACGCACTGTCAA
TTGACTTTTGGTTTCACTTTTACAGTGGGCAGCCGTCAGAACGTATCGTG
GCGTGATGAAGCGATCCTCCGCACTTCATCATCCCACGTTCGATGATTAT
CACCATCCAGGGA
BO18038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30287-PA | 855 | CG30287-RA | 212..852 | 659..19 | 3205 | 100 | Minus |
CG30287-PA | 855 | CG30287-RA | 159..212 | 713..660 | 270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30287-RA | 955 | CG30287-RA | 173..866 | 713..19 | 3450 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21536983..21537392 | 19..428 | 2035 | 99.8 | Plus |
2R | 25286936 | 2R | 21537436..21537615 | 419..598 | 885 | 99.4 | Plus |
2R | 25286936 | 2R | 21537778..21537843 | 647..713 | 285 | 98.5 | Plus |
2R | 25286936 | 2R | 21537667..21537716 | 598..647 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:06:43 has no hits.
BO18038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:23 Download gff for
BO18038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30287-PA | 160..855 | 15..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:10 Download gff for
BO18038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30287-RA | 174..869 | 15..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:43 Download gff for
BO18038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30287-RA | 174..869 | 15..712 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:43 Download gff for
BO18038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21536980..21537386 | 15..422 | 99 | <- | Plus |
2R | 21537440..21537615 | 423..598 | 100 | <- | Plus |
2R | 21537668..21537716 | 599..647 | 100 | <- | Plus |
2R | 21537779..21537842 | 648..712 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:10 Download gff for
BO18038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17424485..17424891 | 15..422 | 99 | <- | Plus |
arm_2R | 17424945..17425120 | 423..598 | 100 | <- | Plus |
arm_2R | 17425173..17425221 | 599..647 | 100 | <- | Plus |
arm_2R | 17425284..17425347 | 648..712 | 98 | | Plus |
BO18038.5prime Sequence
769 bp (766 high quality bases) assembled on 2006-10-13
> BO18038.5prime
GAAGTTATCAGTCGACATGAATATAATGGGAGCTGGAGCTGTGCAGCTCC
TCCTTTTAATAGCCCTGGTTTTCCTAAAGGTACAGGGCCAACCACATTTA
CTAGATCCCCAGTGCGTTACAGCCAGATCTGAGCCGGGTCTATATCGTGT
GATCAATGGCAAGCCAGCGGACTTATTCTCCAATCCCTGGATGGTGATAA
TCATCGAACGTGGGATGATGAAGTGCGGAGGATCGCTCATCACGCCACGA
TACGTTCTGACGGCTGCCCACTGTAAAAGTGAAACCAAAAGTCAATTGAC
AGTGCGTTTGGGTGATTACGACGTGAATCAGGCCGTCGATTGCTCCAGTT
ATGGCTGCATTCCACGGCCCAGGGAAATCAATGTGACCAGAACTTATGTG
CCCAGTCATTACACTAACTTTCGTAAGAATGACATAGCTCTGCTCAGACT
AGAGACAACAGTACAGTATGGAGATAACATAAGATCGATCTGTTTGCTAA
TGGGAGACTACACCTGGTCGTCGAACATACTGAAAAATCTTGTCAAGTTC
AATACCACCGGATGGGGACGCACTGAATCCCGCATAAACAGCCCCGTCCT
GCAGCAAGCATCCTTGACGCATCACCACCTCAGCTACTGTGCCCAAGTCT
TTGGCAAACAACTGGACAAAAGCCACATCTGCGTAGCTAGCAGCACTGGT
TCCACTTGCCAGGGTGATTCGGGTGGACCCCTACCGGCGAGGGTACGGAT
TGGATCGGAAAGAAGAGTG
BO18038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30287-PA | 855 | CG30287-RA | 1..744 | 26..769 | 3695 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30287-RA | 955 | CG30287-RA | 6..758 | 17..769 | 3750 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21537091..21537392 | 769..468 | 1480 | 99.3 | Minus |
2R | 25286936 | 2R | 21537778..21538010 | 249..17 | 1165 | 100 | Minus |
2R | 25286936 | 2R | 21537436..21537615 | 477..298 | 885 | 99.4 | Minus |
2R | 25286936 | 2R | 21537667..21537716 | 298..249 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:42:45 has no hits.
BO18038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:24 Download gff for
BO18038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30287-PA | 1..744 | 26..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:24 Download gff for
BO18038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30287-RA | 2..758 | 15..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:23 Download gff for
BO18038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30287-RA | 2..758 | 15..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:23 Download gff for
BO18038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21537091..21537386 | 474..769 | 99 | <- | Minus |
2R | 21537440..21537615 | 298..473 | 100 | <- | Minus |
2R | 21537668..21537716 | 249..297 | 100 | <- | Minus |
2R | 21537779..21538010 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:24 Download gff for
BO18038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17424596..17424891 | 474..769 | 99 | <- | Minus |
arm_2R | 17424945..17425120 | 298..473 | 100 | <- | Minus |
arm_2R | 17425173..17425221 | 249..297 | 100 | <- | Minus |
arm_2R | 17425284..17425515 | 17..248 | 100 | | Minus |
BO18038.complete Sequence
895 bp assembled on 2006-10-11
GenBank Submission: FJ634292
> BO18038.complete
GAAGTTATCAGTCGACATGAATATAATGGGAGCTGGAGCTGTGCAGCTCC
TCCTTTTAATAGCCCTGGTTTTCCTAAAGGTACAGGGCCAACCACATTTA
CTAGATCCCCAGTGCGTTACAGCCAGATCTGAGCCGGGTCTATATCGTGT
GATCAATGGCAAGCCAGCGGACTTATTCTCCAATCCCTGGATGGTGATAA
TCATCGAACGTGGGATGATGAAGTGCGGAGGATCGCTCATCACGCCACGA
TACGTTCTGACGGCTGCCCACTGTAAAAGTGAAACCAAAAGTCAATTGAC
AGTGCGTTTGGGTGATTACGACGTGAATCAGGCCGTCGATTGCTCCAGTT
ATGGCTGCATTCCACGGCCCAGGGAAATCAATGTGACCAGAACTTATGTG
CCCAGTCATTACACTAACTTTCGTAAGAATGACATAGCTCTGCTCAGACT
AGAGACAACAGTACAGTATGGAGATAACATAAGATCGATCTGTTTGCTAA
TGGGAGACTACACCTGGTCGTCGAACATACTGAAAAATCTTGTCAAGTTC
AATACCACCGGATGGGGACGCACTGAATCCCGCATAAACAGCCCCGTCCT
GCAGCAAGCATCCTTGACGCATCACCACCTCAGCTACTGTGCCCAAGTCT
TTGGCAAACAACTGGACAAAAGCCACATCTGCGTAGCTAGCAGCACTGGT
TCCACTTGCCAGGGTGATTCGGGTGGACCCCTAACGGCGAGGGTACGGAT
TGGATCGGAAAGAAGAGTGATACTCTTCGGGGTGGTCAGCTATGGTGCGG
TTCACTGCTTTGGCCCTACTGTCTACACAAACGTCATTCACTTTGCGAAC
TGGATCGAGTTACATACCAAAAAAAATGCAAGCTTTCTAGACCAT
BO18038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30287-RA | 855 | CG30287-PA | 1..852 | 26..877 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30287-RA | 955 | CG30287-RA | 6..866 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21536983..21537392 | 877..468 | 2035 | 99.8 | Minus |
2R | 25286936 | 2R | 21537778..21538010 | 249..17 | 1165 | 100 | Minus |
2R | 25286936 | 2R | 21537436..21537615 | 477..298 | 885 | 99.4 | Minus |
2R | 25286936 | 2R | 21537667..21537716 | 298..249 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:04:40 has no hits.
BO18038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:04 Download gff for
BO18038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30287-RA | 1..855 | 26..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:30 Download gff for
BO18038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30287-RA | 1..855 | 26..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:16 Download gff for
BO18038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30287-RA | 6..857 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:04 Download gff for
BO18038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30287-RA | 1..855 | 26..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:52 Download gff for
BO18038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30287-RA | 6..857 | 17..868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:52 Download gff for
BO18038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21537440..21537615 | 298..473 | 100 | <- | Minus |
2R | 21537668..21537716 | 249..297 | 100 | <- | Minus |
2R | 21537779..21538010 | 17..248 | 100 | | Minus |
2R | 21536992..21537386 | 474..868 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:16 Download gff for
BO18038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17424497..17424891 | 474..868 | 100 | <- | Minus |
arm_2R | 17424945..17425120 | 298..473 | 100 | <- | Minus |
arm_2R | 17425173..17425221 | 249..297 | 100 | <- | Minus |
arm_2R | 17425284..17425515 | 17..248 | 100 | | Minus |
BO18038.pep Sequence
Translation from 16 to 895
> BO18038.pep
MNIMGAGAVQLLLLIALVFLKVQGQPHLLDPQCVTARSEPGLYRVINGKP
ADLFSNPWMVIIIERGMMKCGGSLITPRYVLTAAHCKSETKSQLTVRLGD
YDVNQAVDCSSYGCIPRPREINVTRTYVPSHYTNFRKNDIALLRLETTVQ
YGDNIRSICLLMGDYTWSSNILKNLVKFNTTGWGRTESRINSPVLQQASL
THHHLSYCAQVFGKQLDKSHICVASSTGSTCQGDSGGPLTARVRIGSERR
VILFGVVSYGAVHCFGPTVYTNVIHFANWIELHTKKNASFLDH
BO18038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30287-PA | 284 | CG30287-PA | 1..284 | 4..287 | 1508 | 100 | Plus |
CG33226-PC | 292 | CG33226-PC | 18..282 | 14..280 | 517 | 42.2 | Plus |
CG30090-PA | 291 | CG30090-PA | 3..280 | 7..287 | 474 | 38.5 | Plus |
CG30414-PC | 305 | CG30414-PC | 5..290 | 8..280 | 466 | 39.4 | Plus |
CG30414-PB | 305 | CG30414-PB | 5..290 | 8..280 | 466 | 39.4 | Plus |