Clone BO18038 Report

Search the DGRC for BO18038

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:38
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO18038.pep: validated full length
Sequenced Size:895

Clone Sequence Records

BO18038.3prime Sequence

713 bp (706 high quality bases) assembled on 2006-10-13

> BO18038.3prime
ATGGTCTAGAAAGCTTGCATTTTTTTTGGTATGTAACTCGATCCAGTTCG
CAAAGTGAATGACGTTTGTGTAGACAGTAGGGCCAAAGCAGTGAACCGCA
CCATAGCTGACCACCCCGAAGAGTATCACTCTTCTTTCCGATCCAATCCG
TACCCTCGCCGTTAGGGGTCCACCCGAATCACCCTGGCAAGTGGAACCAG
TGCTGCTAGCTACGCAGATGTGGCTTTTGTCCAGTTGTTTGCCAAAGACT
TGGGCACAGTAGCTGAGGTGGTGATGCGTCAAGGATGCTTGCTGCAGGAC
GGGGCTGTTTATGCGGGATTCAGTGCGTCCCCATCCGGTGGTATTGAACT
TGACAAGATTTTTCAGTATGTTCGACGACCAGGTGTAGTCTCCCATTAGC
AAACAGATCGATCTTATGTTATCTCCATACTGTACTGTTGTCTCTAGTCT
GAGCAGAGCTATGTCATTCTTACGAAAGTTAGTGTAATGACTGGGCACAT
AAGTTCTGGTCACATTGATTTCCCTGGGCCGTGGAATGCAGCCATAACTG
GAGCAATCGACGGCCTGATTCACGTCGTAATCACCCAAACGCACTGTCAA
TTGACTTTTGGTTTCACTTTTACAGTGGGCAGCCGTCAGAACGTATCGTG
GCGTGATGAAGCGATCCTCCGCACTTCATCATCCCACGTTCGATGATTAT
CACCATCCAGGGA

BO18038.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG30287-PA 855 CG30287-RA 212..852 659..19 3205 100 Minus
CG30287-PA 855 CG30287-RA 159..212 713..660 270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG30287-RA 955 CG30287-RA 173..866 713..19 3450 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21536983..21537392 19..428 2035 99.8 Plus
2R 25286936 2R 21537436..21537615 419..598 885 99.4 Plus
2R 25286936 2R 21537778..21537843 647..713 285 98.5 Plus
2R 25286936 2R 21537667..21537716 598..647 250 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:06:43 has no hits.

BO18038.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:23 Download gff for BO18038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30287-PA 160..855 15..712 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:10 Download gff for BO18038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30287-RA 174..869 15..712 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:43 Download gff for BO18038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30287-RA 174..869 15..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:43 Download gff for BO18038.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21536980..21537386 15..422 99 <- Plus
2R 21537440..21537615 423..598 100 <- Plus
2R 21537668..21537716 599..647 100 <- Plus
2R 21537779..21537842 648..712 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:10 Download gff for BO18038.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17424485..17424891 15..422 99 <- Plus
arm_2R 17424945..17425120 423..598 100 <- Plus
arm_2R 17425173..17425221 599..647 100 <- Plus
arm_2R 17425284..17425347 648..712 98   Plus

BO18038.5prime Sequence

769 bp (766 high quality bases) assembled on 2006-10-13

> BO18038.5prime
GAAGTTATCAGTCGACATGAATATAATGGGAGCTGGAGCTGTGCAGCTCC
TCCTTTTAATAGCCCTGGTTTTCCTAAAGGTACAGGGCCAACCACATTTA
CTAGATCCCCAGTGCGTTACAGCCAGATCTGAGCCGGGTCTATATCGTGT
GATCAATGGCAAGCCAGCGGACTTATTCTCCAATCCCTGGATGGTGATAA
TCATCGAACGTGGGATGATGAAGTGCGGAGGATCGCTCATCACGCCACGA
TACGTTCTGACGGCTGCCCACTGTAAAAGTGAAACCAAAAGTCAATTGAC
AGTGCGTTTGGGTGATTACGACGTGAATCAGGCCGTCGATTGCTCCAGTT
ATGGCTGCATTCCACGGCCCAGGGAAATCAATGTGACCAGAACTTATGTG
CCCAGTCATTACACTAACTTTCGTAAGAATGACATAGCTCTGCTCAGACT
AGAGACAACAGTACAGTATGGAGATAACATAAGATCGATCTGTTTGCTAA
TGGGAGACTACACCTGGTCGTCGAACATACTGAAAAATCTTGTCAAGTTC
AATACCACCGGATGGGGACGCACTGAATCCCGCATAAACAGCCCCGTCCT
GCAGCAAGCATCCTTGACGCATCACCACCTCAGCTACTGTGCCCAAGTCT
TTGGCAAACAACTGGACAAAAGCCACATCTGCGTAGCTAGCAGCACTGGT
TCCACTTGCCAGGGTGATTCGGGTGGACCCCTACCGGCGAGGGTACGGAT
TGGATCGGAAAGAAGAGTG

BO18038.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG30287-PA 855 CG30287-RA 1..744 26..769 3695 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30287-RA 955 CG30287-RA 6..758 17..769 3750 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21537091..21537392 769..468 1480 99.3 Minus
2R 25286936 2R 21537778..21538010 249..17 1165 100 Minus
2R 25286936 2R 21537436..21537615 477..298 885 99.4 Minus
2R 25286936 2R 21537667..21537716 298..249 250 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:42:45 has no hits.

BO18038.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:24 Download gff for BO18038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30287-PA 1..744 26..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:24 Download gff for BO18038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30287-RA 2..758 15..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:23 Download gff for BO18038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30287-RA 2..758 15..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:23 Download gff for BO18038.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21537091..21537386 474..769 99 <- Minus
2R 21537440..21537615 298..473 100 <- Minus
2R 21537668..21537716 249..297 100 <- Minus
2R 21537779..21538010 17..248 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:24 Download gff for BO18038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17424596..17424891 474..769 99 <- Minus
arm_2R 17424945..17425120 298..473 100 <- Minus
arm_2R 17425173..17425221 249..297 100 <- Minus
arm_2R 17425284..17425515 17..248 100   Minus

BO18038.complete Sequence

895 bp assembled on 2006-10-11

GenBank Submission: FJ634292

> BO18038.complete
GAAGTTATCAGTCGACATGAATATAATGGGAGCTGGAGCTGTGCAGCTCC
TCCTTTTAATAGCCCTGGTTTTCCTAAAGGTACAGGGCCAACCACATTTA
CTAGATCCCCAGTGCGTTACAGCCAGATCTGAGCCGGGTCTATATCGTGT
GATCAATGGCAAGCCAGCGGACTTATTCTCCAATCCCTGGATGGTGATAA
TCATCGAACGTGGGATGATGAAGTGCGGAGGATCGCTCATCACGCCACGA
TACGTTCTGACGGCTGCCCACTGTAAAAGTGAAACCAAAAGTCAATTGAC
AGTGCGTTTGGGTGATTACGACGTGAATCAGGCCGTCGATTGCTCCAGTT
ATGGCTGCATTCCACGGCCCAGGGAAATCAATGTGACCAGAACTTATGTG
CCCAGTCATTACACTAACTTTCGTAAGAATGACATAGCTCTGCTCAGACT
AGAGACAACAGTACAGTATGGAGATAACATAAGATCGATCTGTTTGCTAA
TGGGAGACTACACCTGGTCGTCGAACATACTGAAAAATCTTGTCAAGTTC
AATACCACCGGATGGGGACGCACTGAATCCCGCATAAACAGCCCCGTCCT
GCAGCAAGCATCCTTGACGCATCACCACCTCAGCTACTGTGCCCAAGTCT
TTGGCAAACAACTGGACAAAAGCCACATCTGCGTAGCTAGCAGCACTGGT
TCCACTTGCCAGGGTGATTCGGGTGGACCCCTAACGGCGAGGGTACGGAT
TGGATCGGAAAGAAGAGTGATACTCTTCGGGGTGGTCAGCTATGGTGCGG
TTCACTGCTTTGGCCCTACTGTCTACACAAACGTCATTCACTTTGCGAAC
TGGATCGAGTTACATACCAAAAAAAATGCAAGCTTTCTAGACCAT

BO18038.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG30287-RA 855 CG30287-PA 1..852 26..877 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG30287-RA 955 CG30287-RA 6..866 17..877 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21536983..21537392 877..468 2035 99.8 Minus
2R 25286936 2R 21537778..21538010 249..17 1165 100 Minus
2R 25286936 2R 21537436..21537615 477..298 885 99.4 Minus
2R 25286936 2R 21537667..21537716 298..249 250 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:04:40 has no hits.

BO18038.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:04 Download gff for BO18038.complete
Subject Subject Range Query Range Percent Splice Strand
CG30287-RA 1..855 26..881 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:30 Download gff for BO18038.complete
Subject Subject Range Query Range Percent Splice Strand
CG30287-RA 1..855 26..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:16 Download gff for BO18038.complete
Subject Subject Range Query Range Percent Splice Strand
CG30287-RA 6..857 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:04 Download gff for BO18038.complete
Subject Subject Range Query Range Percent Splice Strand
CG30287-RA 1..855 26..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:52 Download gff for BO18038.complete
Subject Subject Range Query Range Percent Splice Strand
CG30287-RA 6..857 17..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:52 Download gff for BO18038.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21537440..21537615 298..473 100 <- Minus
2R 21537668..21537716 249..297 100 <- Minus
2R 21537779..21538010 17..248 100   Minus
2R 21536992..21537386 474..868 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:16 Download gff for BO18038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17424497..17424891 474..868 100 <- Minus
arm_2R 17424945..17425120 298..473 100 <- Minus
arm_2R 17425173..17425221 249..297 100 <- Minus
arm_2R 17425284..17425515 17..248 100   Minus

BO18038.pep Sequence

Translation from 16 to 895

> BO18038.pep
MNIMGAGAVQLLLLIALVFLKVQGQPHLLDPQCVTARSEPGLYRVINGKP
ADLFSNPWMVIIIERGMMKCGGSLITPRYVLTAAHCKSETKSQLTVRLGD
YDVNQAVDCSSYGCIPRPREINVTRTYVPSHYTNFRKNDIALLRLETTVQ
YGDNIRSICLLMGDYTWSSNILKNLVKFNTTGWGRTESRINSPVLQQASL
THHHLSYCAQVFGKQLDKSHICVASSTGSTCQGDSGGPLTARVRIGSERR
VILFGVVSYGAVHCFGPTVYTNVIHFANWIELHTKKNASFLDH

BO18038.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG30287-PA 284 CG30287-PA 1..284 4..287 1508 100 Plus
CG33226-PC 292 CG33226-PC 18..282 14..280 517 42.2 Plus
CG30090-PA 291 CG30090-PA 3..280 7..287 474 38.5 Plus
CG30414-PC 305 CG30414-PC 5..290 8..280 466 39.4 Plus
CG30414-PB 305 CG30414-PB 5..290 8..280 466 39.4 Plus