Clone BO18040 Report

Search the DGRC for BO18040

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG13044-RA
Protein status:BO18040.pep:
Sequenced Size:499

Clone Sequence Records

BO18040.5prime Sequence

497 bp (497 high quality bases) assembled on 2006-10-13

> BO18040.5prime
GAAGTTATCAGTCGACATGTTCAAATTGTTCGTTCTCGCTGCTCTTTTGG
CCGTGGCCGCCGCCAAGCCCGGTCACCTGGCTGCTGCTCCTCTGGTCTAC
AGCGCTCCCGCCACCACCACCGTCGTCCAGGAGCCCGTTCTGGCCAAAGT
GGGTGCTGTTGTGAAGAGCGTGCCCACCGCCGTGTCCCACCAGAGCCTGA
CCCAGGTGCACAGCACCCCCGTGGTGGAGGATGTGGTGGCTCCCGTGGTC
AAGACCACCGCTGTCCACTCCGCTCCCGTGTTGGCCGCCGCACCCATTGT
GAAGACTTTGGCTCCCGTCGCCTACTCTGCTCCTCTGGCCTACTCCGCCC
CGGTGGCCTACTCCTCGTATGCCGCTCCTCTGACCTATTCCGCACCGGTG
GCCTACTCGGCTCCCCTCTCCTACGCCGCCCCAGCTCCCCTGCTGCACCA
CGCCCCTCTGACCTACGCCGCTGGCTCCTGGGCAAGCTTTCTAGACC

BO18040.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-PA 468 CG13044-RA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-RA 624 CG13044-RA 66..530 17..481 2325 100 Plus
CG13043-RA 646 CG13043-RA 185..327 119..258 290 81.1 Plus
CG13063-RA 544 CG13063-RA 46..292 15..258 240 73.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16302584..16303037 481..28 2270 100 Minus
3L 28110227 3L 16305544..16305686 258..119 245 79.7 Minus
3L 28110227 3L 16306779..16306906 87..214 205 77.3 Plus
Blast to na_te.dros performed on 2015-02-02 17:51:11 has no hits.

BO18040.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:25 Download gff for BO18040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-PA 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:08 Download gff for BO18040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 59..533 9..485 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:45 Download gff for BO18040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 59..533 9..485 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:45 Download gff for BO18040.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16302581..16303041 21..485 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:08 Download gff for BO18040.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16295681..16296141 21..485 98   Minus

BO18040.3prime Sequence

497 bp (497 high quality bases) assembled on 2006-10-13

> BO18040.3prime
ATGGTCTAGAAAGCTTGCCCAGGAGCCAGCGGCGTAGGTCAGAGGGGCGT
GGTGCAGCAGGGGAGCTGGGGCGGCGTAGGAGAGGGGAGCCGAGTAGGCC
ACCGGTGCGGAATAGGTCAGAGGAGCGGCATACGAGGAGTAGGCCACCGG
GGCGGAGTAGGCCAGAGGAGCAGAGTAGGCGACGGGAGCCAAAGTCTTCA
CAATGGGTGCGGCGGCCAACACGGGAGCGGAGTGGACAGCGGTGGTCTTG
ACCACGGGAGCCACCACATCCTCCACCACGGGGGTGCTGTGCACCTGGGT
CAGGCTCTGGTGGGACACGGCGGTGGGCACGCTCTTCACAACAGCACCCA
CTTTGGCCAGAACGGGCTCCTGGACGACGGTGGTGGTGGCGGGAGCGCTG
TAGACCAGAGGAGCAGCAGCCAGGTGACCGGGCTTGGCGGCGGCCACGGC
CAAAAGAGCAGCGAGAACGAACAATTTGAACATGTCGACTGATAACT

BO18040.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-PA 468 CG13044-RA 1..465 483..19 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-RA 624 CG13044-RA 66..530 483..19 2325 100 Minus
CG13043-RA 646 CG13043-RA 185..327 381..242 290 81.1 Minus
CG13063-RA 544 CG13063-RA 46..292 485..242 240 73.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16302584..16303037 19..472 2270 100 Plus
3L 28110227 3L 16305544..16305686 242..381 245 79.7 Plus
3L 28110227 3L 16306779..16306906 413..286 205 77.3 Minus
Blast to na_te.dros performed on 2015-02-10 17:25:01 has no hits.

BO18040.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:25 Download gff for BO18040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-PA 1..468 15..483 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:54 Download gff for BO18040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 59..533 15..491 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:05 Download gff for BO18040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 59..533 15..491 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:05 Download gff for BO18040.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16302581..16303041 15..479 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:54 Download gff for BO18040.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16295681..16296141 15..479 98   Plus

BO18040.complete Sequence

499 bp assembled on 2006-10-11

GenBank Submission: FJ634293

> BO18040.complete
GAAGTTATCAGTCGACATGTTCAAATTGTTCGTTCTCGCTGCTCTTTTGG
CCGTGGCCGCCGCCAAGCCCGGTCACCTGGCTGCTGCTCCTCTGGTCTAC
AGCGCTCCCGCCACCACCACCGTCGTCCAGGAGCCCGTTCTGGCCAAAGT
GGGTGCTGTTGTGAAGAGCGTGCCCACCGCCGTGTCCCACCAGAGCCTGA
CCCAGGTGCACAGCACCCCCGTGGTGGAGGATGTGGTGGCTCCCGTGGTC
AAGACCACCGCTGTCCACTCCGCTCCCGTGTTGGCCGCCGCACCCATTGT
GAAGACTTTGGCTCCCGTCGCCTACTCTGCTCCTCTGGCCTACTCCGCCC
CGGTGGCCTACTCCTCGTATGCCGCTCCTCTGACCTATTCCGCACCGGTG
GCCTACTCGGCTCCCCTCTCCTACGCCGCCCCAGCTCCCCTGCTGCACCA
CGCCCCTCTGACCTACGCCGCTGGCTCCTGGGCAAGCTTTCTAGACCAT

BO18040.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-RA 468 CG13044-PA 1..465 17..481 2325 100 Plus
CG13043-RA 447 CG13043-PA 106..248 119..258 245 79.7 Plus
CG13063-RA 390 CG13063-PA 1..198 17..214 210 73.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-RA 624 CG13044-RA 66..530 17..481 2325 100 Plus
CG13043-RA 646 CG13043-RA 185..327 119..258 245 79.7 Plus
CG13063-RA 544 CG13063-RA 46..245 15..214 220 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16302584..16303037 481..28 2270 100 Minus
3L 28110227 3L 16305544..16305686 258..119 245 79.7 Minus
3L 28110227 3L 16306779..16306906 87..214 205 77.3 Plus
Blast to na_te.dros performed on 2014-11-27 23:33:03 has no hits.

BO18040.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:05 Download gff for BO18040.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:11 Download gff for BO18040.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 41..515 9..485 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:31 Download gff for BO18040.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 71..530 22..483 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:05 Download gff for BO18040.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 41..515 9..485 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:01 Download gff for BO18040.complete
Subject Subject Range Query Range Percent Splice Strand
CG13044-RA 71..530 22..483 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:01 Download gff for BO18040.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16302582..16303039 22..483 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:31 Download gff for BO18040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16295682..16296139 22..483 98   Minus

BO18040.pep Sequence

Translation from 16 to 499

> BO18040.pep
MFKLFVLAALLAVAAAKPGHLAAAPLVYSAPATTTVVQEPVLAKVGAVVK
SVPTAVSHQSLTQVHSTPVVEDVVAPVVKTTAVHSAPVLAAAPIVKTLAP
VAYSAPLAYSAPVAYSSYAAPLTYSAPVAYSAPLSYAAPAPLLHHAPLTY
AAGSWASFLDH

BO18040.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13044-PA 155 CG13044-PA 1..155 1..155 767 100 Plus
CG13043-PA 148 CG13043-PA 1..148 1..155 374 60.8 Plus
CG13063-PA 129 CG13063-PA 1..127 1..146 340 56.5 Plus
CG13041-PA 124 CG13041-PA 1..121 1..131 264 50 Plus
CG13060-PA 131 CG13060-PA 1..127 1..150 261 47.3 Plus