Clone Sequence Records
BO18040.5prime Sequence
497 bp (497 high quality bases) assembled on 2006-10-13
> BO18040.5prime
GAAGTTATCAGTCGACATGTTCAAATTGTTCGTTCTCGCTGCTCTTTTGG
CCGTGGCCGCCGCCAAGCCCGGTCACCTGGCTGCTGCTCCTCTGGTCTAC
AGCGCTCCCGCCACCACCACCGTCGTCCAGGAGCCCGTTCTGGCCAAAGT
GGGTGCTGTTGTGAAGAGCGTGCCCACCGCCGTGTCCCACCAGAGCCTGA
CCCAGGTGCACAGCACCCCCGTGGTGGAGGATGTGGTGGCTCCCGTGGTC
AAGACCACCGCTGTCCACTCCGCTCCCGTGTTGGCCGCCGCACCCATTGT
GAAGACTTTGGCTCCCGTCGCCTACTCTGCTCCTCTGGCCTACTCCGCCC
CGGTGGCCTACTCCTCGTATGCCGCTCCTCTGACCTATTCCGCACCGGTG
GCCTACTCGGCTCCCCTCTCCTACGCCGCCCCAGCTCCCCTGCTGCACCA
CGCCCCTCTGACCTACGCCGCTGGCTCCTGGGCAAGCTTTCTAGACC
BO18040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-PA | 468 | CG13044-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-RA | 624 | CG13044-RA | 66..530 | 17..481 | 2325 | 100 | Plus |
CG13043-RA | 646 | CG13043-RA | 185..327 | 119..258 | 290 | 81.1 | Plus |
CG13063-RA | 544 | CG13063-RA | 46..292 | 15..258 | 240 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16302584..16303037 | 481..28 | 2270 | 100 | Minus |
3L | 28110227 | 3L | 16305544..16305686 | 258..119 | 245 | 79.7 | Minus |
3L | 28110227 | 3L | 16306779..16306906 | 87..214 | 205 | 77.3 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:51:11 has no hits.
BO18040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:25 Download gff for
BO18040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-PA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:08 Download gff for
BO18040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 59..533 | 9..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:45 Download gff for
BO18040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 59..533 | 9..485 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:45 Download gff for
BO18040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16302581..16303041 | 21..485 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:08 Download gff for
BO18040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16295681..16296141 | 21..485 | 98 | | Minus |
BO18040.3prime Sequence
497 bp (497 high quality bases) assembled on 2006-10-13
> BO18040.3prime
ATGGTCTAGAAAGCTTGCCCAGGAGCCAGCGGCGTAGGTCAGAGGGGCGT
GGTGCAGCAGGGGAGCTGGGGCGGCGTAGGAGAGGGGAGCCGAGTAGGCC
ACCGGTGCGGAATAGGTCAGAGGAGCGGCATACGAGGAGTAGGCCACCGG
GGCGGAGTAGGCCAGAGGAGCAGAGTAGGCGACGGGAGCCAAAGTCTTCA
CAATGGGTGCGGCGGCCAACACGGGAGCGGAGTGGACAGCGGTGGTCTTG
ACCACGGGAGCCACCACATCCTCCACCACGGGGGTGCTGTGCACCTGGGT
CAGGCTCTGGTGGGACACGGCGGTGGGCACGCTCTTCACAACAGCACCCA
CTTTGGCCAGAACGGGCTCCTGGACGACGGTGGTGGTGGCGGGAGCGCTG
TAGACCAGAGGAGCAGCAGCCAGGTGACCGGGCTTGGCGGCGGCCACGGC
CAAAAGAGCAGCGAGAACGAACAATTTGAACATGTCGACTGATAACT
BO18040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-PA | 468 | CG13044-RA | 1..465 | 483..19 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-RA | 624 | CG13044-RA | 66..530 | 483..19 | 2325 | 100 | Minus |
CG13043-RA | 646 | CG13043-RA | 185..327 | 381..242 | 290 | 81.1 | Minus |
CG13063-RA | 544 | CG13063-RA | 46..292 | 485..242 | 240 | 73.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16302584..16303037 | 19..472 | 2270 | 100 | Plus |
3L | 28110227 | 3L | 16305544..16305686 | 242..381 | 245 | 79.7 | Plus |
3L | 28110227 | 3L | 16306779..16306906 | 413..286 | 205 | 77.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:25:01 has no hits.
BO18040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:25 Download gff for
BO18040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-PA | 1..468 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:54 Download gff for
BO18040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 59..533 | 15..491 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:05 Download gff for
BO18040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 59..533 | 15..491 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:05 Download gff for
BO18040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16302581..16303041 | 15..479 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:54 Download gff for
BO18040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16295681..16296141 | 15..479 | 98 | | Plus |
BO18040.complete Sequence
499 bp assembled on 2006-10-11
GenBank Submission: FJ634293
> BO18040.complete
GAAGTTATCAGTCGACATGTTCAAATTGTTCGTTCTCGCTGCTCTTTTGG
CCGTGGCCGCCGCCAAGCCCGGTCACCTGGCTGCTGCTCCTCTGGTCTAC
AGCGCTCCCGCCACCACCACCGTCGTCCAGGAGCCCGTTCTGGCCAAAGT
GGGTGCTGTTGTGAAGAGCGTGCCCACCGCCGTGTCCCACCAGAGCCTGA
CCCAGGTGCACAGCACCCCCGTGGTGGAGGATGTGGTGGCTCCCGTGGTC
AAGACCACCGCTGTCCACTCCGCTCCCGTGTTGGCCGCCGCACCCATTGT
GAAGACTTTGGCTCCCGTCGCCTACTCTGCTCCTCTGGCCTACTCCGCCC
CGGTGGCCTACTCCTCGTATGCCGCTCCTCTGACCTATTCCGCACCGGTG
GCCTACTCGGCTCCCCTCTCCTACGCCGCCCCAGCTCCCCTGCTGCACCA
CGCCCCTCTGACCTACGCCGCTGGCTCCTGGGCAAGCTTTCTAGACCAT
BO18040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-RA | 468 | CG13044-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
CG13043-RA | 447 | CG13043-PA | 106..248 | 119..258 | 245 | 79.7 | Plus |
CG13063-RA | 390 | CG13063-PA | 1..198 | 17..214 | 210 | 73.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-RA | 624 | CG13044-RA | 66..530 | 17..481 | 2325 | 100 | Plus |
CG13043-RA | 646 | CG13043-RA | 185..327 | 119..258 | 245 | 79.7 | Plus |
CG13063-RA | 544 | CG13063-RA | 46..245 | 15..214 | 220 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16302584..16303037 | 481..28 | 2270 | 100 | Minus |
3L | 28110227 | 3L | 16305544..16305686 | 258..119 | 245 | 79.7 | Minus |
3L | 28110227 | 3L | 16306779..16306906 | 87..214 | 205 | 77.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:33:03 has no hits.
BO18040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:05 Download gff for
BO18040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:11 Download gff for
BO18040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 41..515 | 9..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:31 Download gff for
BO18040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 71..530 | 22..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:05 Download gff for
BO18040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 41..515 | 9..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:01 Download gff for
BO18040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13044-RA | 71..530 | 22..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:01 Download gff for
BO18040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16302582..16303039 | 22..483 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:31 Download gff for
BO18040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16295682..16296139 | 22..483 | 98 | | Minus |
BO18040.pep Sequence
Translation from 16 to 499
> BO18040.pep
MFKLFVLAALLAVAAAKPGHLAAAPLVYSAPATTTVVQEPVLAKVGAVVK
SVPTAVSHQSLTQVHSTPVVEDVVAPVVKTTAVHSAPVLAAAPIVKTLAP
VAYSAPLAYSAPVAYSSYAAPLTYSAPVAYSAPLSYAAPAPLLHHAPLTY
AAGSWASFLDH
BO18040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13044-PA | 155 | CG13044-PA | 1..155 | 1..155 | 767 | 100 | Plus |
CG13043-PA | 148 | CG13043-PA | 1..148 | 1..155 | 374 | 60.8 | Plus |
CG13063-PA | 129 | CG13063-PA | 1..127 | 1..146 | 340 | 56.5 | Plus |
CG13041-PA | 124 | CG13041-PA | 1..121 | 1..131 | 264 | 50 | Plus |
CG13060-PA | 131 | CG13060-PA | 1..127 | 1..150 | 261 | 47.3 | Plus |