Clone Sequence Records
BO18041.3prime Sequence
812 bp (777 high quality bases) assembled on 2006-10-13
> BO18041.3prime
ATGGTCTAGAAAGCTTGCTTTGCCCACCTCCTTCCAATGGACAATAGCGC
GCTGCTCGTCCGGTGCATCGCCGAATGGACGGCTGCCGTCGGAGTGCACG
TACTCGTTCACCTGGAAGTTGAGAAGCGTCTTATAGTGGTAGACATCCGC
CAGCTGCTGCGTCAGCGGACTGGTGTTGGTGGTGAAGATGCCGGCGAACT
GCTTCTCGCGGGCCACCCGCAGAACCTCGTGCTCCATAAAGTGCATGCAG
GCGATGTTCTCGCGGGGATTCAACTTCTCGGCGGTGCCCATCATGAACGA
GTGCAGGATTTGGTTGAGACCCTTGGGCAGGTAGTTATCCCTGATGGGAC
CCTCGCAAAACTCCAGAAACTCGAAGACAATGAGTAGCTTGGACTTGATG
TCCACCTCGGGCTCGTTGCGCGCATCAAAGTTCAACGCTGTGCCAATAAT
GCGATCCGTGTTGGTATCGTAGACCACGAAACTTAGGTCCCGCTCCACCA
GCACATTCCAGATATCGTTCAGTATATCGCTGTAGTCGGTTCTCAAAACT
CCGGGCTTGAGCCACTGCTCCAGGTCGGCCTTGTTATAGAAGCTAGCCAC
AATAATGTCGATGACTTCCTGGCGGTGCTCCAGGCGTAGCGGCACCGCCT
CCATCTTCAGATGCGGACAAGCATTCAAGGATTCCTCCTCTAGCTGCACT
GCATCATGGTTGGCCGCCATCTTCTCGATGATCTCGCCCAGATTCTTGGC
CGCAATGAATTCGGAAATGCCGATGTTGTAACCCTTCTCGCGCAGCAGCG
TCACCGTGAAAA
BO18041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3331-PA | 2640 | e-RA | 1844..2637 | 812..19 | 3945 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e-RA | 3142 | CG3331-RA | 2143..2936 | 812..19 | 3955 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21230045..21230369 | 19..343 | 1625 | 100 | Plus |
| 3R | 32079331 | 3R | 21230817..21231021 | 608..812 | 1010 | 99.5 | Plus |
| 3R | 32079331 | 3R | 21230422..21230598 | 340..516 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 21230659..21230750 | 516..607 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:41:20 has no hits.
BO18041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:26 Download gff for
BO18041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3331-PA | 1848..2640 | 18..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:18 Download gff for
BO18041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 2147..2936 | 19..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:01 Download gff for
BO18041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 2147..2936 | 19..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:01 Download gff for
BO18041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21230817..21231017 | 608..808 | 99 | | Plus |
| 3R | 21230045..21230366 | 19..340 | 100 | <- | Plus |
| 3R | 21230423..21230598 | 341..516 | 100 | <- | Plus |
| 3R | 21230660..21230750 | 517..607 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:18 Download gff for
BO18041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17055767..17056088 | 19..340 | 100 | <- | Plus |
| arm_3R | 17056145..17056320 | 341..516 | 100 | <- | Plus |
| arm_3R | 17056382..17056472 | 517..607 | 100 | <- | Plus |
| arm_3R | 17056539..17056739 | 608..808 | 99 | | Plus |
BO18041.5prime Sequence
800 bp (767 high quality bases) assembled on 2006-10-13
> BO18041.5prime
GAAGTTATCAGTCGACATGGGTTCGCTGCCACAATTGTCGATCGTCAAGG
GTCTGCAGCAAGACTTCGTGCCTAGAGCTCTGCACCGCATCTTCGAGGAG
CAGCAGCTGCGGCATGCCGACAAGGTGGCTCTGATCTATCAGCCCAGCAC
TACGGGCCAGGGAATGGCGCCCAGTCAGAGCAGCTACCGCCAGATGAACG
AGCGTGCGAACCGGGCAGCCCGCCTCCTGGTGGCCGAGACCCACGGCCGG
TTCCTGCAGCCAAACAGCGATGGTGACTTCATCGTGGCTGTGTGCATGCA
GCCGTCGGAGGGATTGGTCACCACACTGCTGGCCATCTGGAAGGCTGGCG
GCGCGTATTTGCCCATCGATCCCAGCTTCCCGGCGAACCGCATTCACCAC
ATACTGCTGGAGGCGAAGCCCACCTTGGTGATTCGCGACGATGACATCGA
CGCCGGCCGTTTCCAGGGAACTCCCACGTTATCCACCACCGAACTGTATG
CCAAATCCCTCCAGCTGGCCGGCTCCAATCTGCTCTCAGAGGAGATGCTG
CGCGGTGGCAACGACCACATCGCCATCGTGCTCTACACCTCGGGCAGTAC
GGGTGTGCCCAAGGGAGTGCGTCTGCCGCACGAGAGCATCCTCAATCGGC
TCCAGTGGCAGTGGGCGACCTTTCCGTACACCGCCAACGAGGCGGTGAGC
GTTTTCAAGACGGCCCTAACCTTCGTGGACTCGATTGCGGAGCTATGGGG
CCCGTTAATGTGTGGCCTGGCCATTCTGGTGGTGCCCAAGGCAGTGACCA
BO18041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3331-PA | 2640 | e-RA | 1..784 | 17..800 | 3920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e-RA | 3142 | CG3331-RA | 300..1083 | 17..800 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21232234..21233017 | 800..17 | 3920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:12:02 has no hits.
BO18041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:26 Download gff for
BO18041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3331-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:24:56 Download gff for
BO18041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 290..1082 | 6..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:56 Download gff for
BO18041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 290..1082 | 6..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:56 Download gff for
BO18041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21232235..21233027 | 6..799 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:24:56 Download gff for
BO18041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17057957..17058749 | 6..799 | 99 | | Minus |
BO18041.complete Sequence
2671 bp assembled on 2007-03-23
GenBank Submission: FJ634294
> BO18041.complete
GAAGTTATCAGTCGACATGGGTTCGCTGCCACAATTGTCGATCGTCAAGG
GTCTGCAGCAAGACTTCGTGCCTAGAGCTCTGCACCGCATCTTCGAGGAG
CAGCAGCTGCGGCATGCCGACAAGGTGGCTCTGATCTATCAGCCCAGCAC
TACGGGCCAGGGAATGGCGCCCAGTCAGAGCAGCTACCGCCAGATGAACG
AGCGTGCGAACCGGGCAGCCCGCCTCCTGGTGGCCGAGACCCACGGCCGG
TTCCTGCAGCCAAACAGCGATGGTGACTTCATCGTGGCTGTGTGCATGCA
GCCGTCGGAGGGATTGGTCACCACACTGCTGGCCATCTGGAAGGCTGGCG
GCGCGTATTTGCCCATCGATCCCAGCTTCCCGGCGAACCGCATTCACCAC
ATACTGCTGGAGGCGAAGCCCACCTTGGTGATTCGCGACGATGACATCGA
CGCCGGCCGTTTCCAGGGAACTCCCACGTTATCCACCACCGAACTGTATG
CCAAATCCCTCCAGCTGGCCGGCTCCAATCTGCTCTCAGAGGAGATGCTG
CGCGGTGGCAACGACCACATCGCCATCGTGCTCTACACCTCGGGCAGTAC
GGGTGTGCCCAAGGGAGTGCGTCTGCCGCACGAGAGCATCCTCAATCGGC
TCCAGTGGCAGTGGGCGACCTTTCCGTACACCGCCAACGAGGCGGTGAGC
GTTTTCAAGACGGCCCTAACCTTCGTGGACTCGATTGCGGAGCTATGGGG
CCCGTTAATGTGTGGCCTGGCCATTCTGGTGGTGCCCAAGGCAGTGACCA
AGGATCCCCAGCGATTGGTGGCCCTGTTGGAGCGTTATAAGATCAGGCGT
CTCGTACTGGTGCCCACCCTTCTGCGCTCGTTGCTCATGTATCTGAAGAT
GGAGGGAGGCGGAGCTGCTCAGAAACTGCTGTACAATCTCCAGATTTGGG
TCTGCTCCGGAGAACCCCTATCCGTTTCCCTGGCCAGCAGCTTCTTCGAC
TATTTCGATGAGGGCGTGCACCGGCTGTACAACTTTTACGGATCCACGGA
GGTATTGGGCGATGTCACCTACTTTGCGTGCGAGAGCAAGAAGCAACTGA
GTTTGTACGATAATGTGCCCATAGGCATTCCACTGTCGAATACCGTGGTC
TATTTGTTGGATGCCGACTATCGTCCGGTGAAGAACGGCGAGATTGGGGA
GATCTTTGCTTCGGGTCTCAACTTGGCCGCTGGTTATGTTAACGGACGCG
ATCCGGAGAGGTTCTTGGAGAATCCTTTAGCTGTGGAGAAGAAATACGCC
CGTTTGTATCGCACTGGAGACTATGGATCCCTGAAGAACGGCAGCATCAT
GTACGAGGGACGCACCGACTCTCAGGTGAAGATCCGTGGACATCGCGTCG
ACCTGTCCGAAGTGGAGAAGAACGTGGCCGAGCTGCCGCTGGTGGATAAG
GCCATTGTTCTGTGCTACCATGCTGGTCAGGTGGATCAGGCTATTCTGGC
CTTCGTCAAGCTGCGCGATGATGCCCCCATGGTCACCGAGATGCAGATGG
AGGCTCGTCTCAAGGACAAGCTAGCCGATTACATGACGCCGCAGGTGGTC
ATCCTGGAGCACGTTCCATTGCTGGTCAACGGCAAGGTGGATCGCCAGGC
GCTGCTCAAAACCTATGAGACGGCCAATAACAACGAAGGTGACTCCAGTA
TCGTTCTGGACTTTGACTACTCGCAGGTTCCTGAGGATCTAAAGCTAACG
GCACGGGATCTCTTCGAGACAGTGGGCGGCGTGATTGGACGCTCCACCAG
AGCAACCCTCGCTCCGCACAGTAACTTCTATGAGCTGGGCGGCAACTCGT
TGAATTCCATTTTCACGGTGACGCTGCTGCGCGAGAAGGGCTACAACATC
GGCATTTCCGAATTCATTGCGGCCAAGAATCTGGGCGAGATCATCGAGAA
GATGGCGGCCAACCATGATGCAGTGCAGCTAGAGGAGGAATCCTTGAATG
CTTGTCCGCATCTGAAGATGGAGGCGGTGCCGCTACGCCTGGAGCACCGC
CAGGAAGTCATCGACATTATTGTGGCTAGCTTCTATAACAAGGCCGACCT
GGAGCAGTGGCTCAAGCCCGGAGTTTTGAGAACCGACTACAGCGATATAC
TGAACGATATCTGGAATGTGCTGGTGGAGCGGGACCTAAGTTTCGTGGTC
TACGATACCAACACGGATCGCATTATTGGCACAGCGTTGAACTTTGATGC
GCGCAACGAGCCCGAGGTGGACATCAAGTCCAAGCTACTCATTGTCTTCG
AGTTTCTGGAGTTTTGCGAGGGTCCCATCAGGGATAACTACCTGCCCAAG
GGTCTCAACCAAATCCTGCACTCGTTCATGATGGGCACCGCCGAGAAGTT
GAATCCCCGCGAGAACATCGCCTGCATGCACTTTATGGAGCACGAGGTTC
TGCGGGTGGCCCGCGAGAAGCAGTTCGCCGGCATCTTCACCACCAACACC
AGTCCGCTGACGCAGCAGCTGGCGGATGTCTACCACTATAAGACGCTTCT
CAACTTCCAGGTGAACGAGTACGTGCACTCCGACGGCAGCCGTCCATTCG
GCGATGCACCGGACGAGCAGCGCGCTATTGTCCATTGGAAGGAGGTGGGC
AAAGCAAGCTTTCTAGACCAT
BO18041.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e-RA | 2640 | CG3331-PA | 1..2637 | 17..2653 | 13185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e-RA | 3142 | CG3331-RA | 300..2936 | 17..2653 | 13185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21231909..21233017 | 1125..17 | 5545 | 100 | Minus |
| 3R | 32079331 | 3R | 21230817..21231588 | 2064..1293 | 3860 | 100 | Minus |
| 3R | 32079331 | 3R | 21230045..21230369 | 2653..2329 | 1625 | 100 | Minus |
| 3R | 32079331 | 3R | 21230422..21230598 | 2332..2156 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 21231676..21231845 | 1292..1123 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 21230659..21230750 | 2156..2065 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:31:04 has no hits.
BO18041.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:36 Download gff for
BO18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 1..2640 | 17..2654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:09 Download gff for
BO18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 291..2937 | 6..2653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:17 Download gff for
BO18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 300..2936 | 17..2655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:36 Download gff for
BO18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 291..2937 | 6..2653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:54 Download gff for
BO18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e-RA | 300..2936 | 17..2655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:54 Download gff for
BO18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21230043..21230366 | 2332..2655 | 99 | <- | Minus |
| 3R | 21230423..21230598 | 2156..2331 | 100 | <- | Minus |
| 3R | 21230660..21230750 | 2065..2155 | 100 | <- | Minus |
| 3R | 21230817..21231588 | 1293..2064 | 100 | <- | Minus |
| 3R | 21231676..21231843 | 1125..1292 | 100 | <- | Minus |
| 3R | 21231910..21233017 | 17..1124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:17 Download gff for
BO18041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17055765..17056088 | 2332..2655 | 99 | <- | Minus |
| arm_3R | 17056145..17056320 | 2156..2331 | 100 | <- | Minus |
| arm_3R | 17056382..17056472 | 2065..2155 | 100 | <- | Minus |
| arm_3R | 17056539..17057310 | 1293..2064 | 100 | <- | Minus |
| arm_3R | 17057398..17057565 | 1125..1292 | 100 | <- | Minus |
| arm_3R | 17057632..17058739 | 17..1124 | 100 | | Minus |
BO18041.pep Sequence
Translation from 16 to 2671
> BO18041.pep
MGSLPQLSIVKGLQQDFVPRALHRIFEEQQLRHADKVALIYQPSTTGQGM
APSQSSYRQMNERANRAARLLVAETHGRFLQPNSDGDFIVAVCMQPSEGL
VTTLLAIWKAGGAYLPIDPSFPANRIHHILLEAKPTLVIRDDDIDAGRFQ
GTPTLSTTELYAKSLQLAGSNLLSEEMLRGGNDHIAIVLYTSGSTGVPKG
VRLPHESILNRLQWQWATFPYTANEAVSVFKTALTFVDSIAELWGPLMCG
LAILVVPKAVTKDPQRLVALLERYKIRRLVLVPTLLRSLLMYLKMEGGGA
AQKLLYNLQIWVCSGEPLSVSLASSFFDYFDEGVHRLYNFYGSTEVLGDV
TYFACESKKQLSLYDNVPIGIPLSNTVVYLLDADYRPVKNGEIGEIFASG
LNLAAGYVNGRDPERFLENPLAVEKKYARLYRTGDYGSLKNGSIMYEGRT
DSQVKIRGHRVDLSEVEKNVAELPLVDKAIVLCYHAGQVDQAILAFVKLR
DDAPMVTEMQMEARLKDKLADYMTPQVVILEHVPLLVNGKVDRQALLKTY
ETANNNEGDSSIVLDFDYSQVPEDLKLTARDLFETVGGVIGRSTRATLAP
HSNFYELGGNSLNSIFTVTLLREKGYNIGISEFIAAKNLGEIIEKMAANH
DAVQLEEESLNACPHLKMEAVPLRLEHRQEVIDIIVASFYNKADLEQWLK
PGVLRTDYSDILNDIWNVLVERDLSFVVYDTNTDRIIGTALNFDARNEPE
VDIKSKLLIVFEFLEFCEGPIRDNYLPKGLNQILHSFMMGTAEKLNPREN
IACMHFMEHEVLRVAREKQFAGIFTTNTSPLTQQLADVYHYKTLLNFQVN
EYVHSDGSRPFGDAPDEQRAIVHWKEVGKASFLDH
BO18041.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e-PA | 879 | CG3331-PA | 1..879 | 1..879 | 4529 | 100 | Plus |
