Clone Sequence Records
BO18042.3prime Sequence
749 bp (701 high quality bases) assembled on 2006-10-13
> BO18042.3prime
ATGGTCTAGAAAGCTTGCCAACTTTGTGTTGACAATATCCTCTCGCGACT
CGGTGGTCTGAACCTCGTTCCACTTCTGGATTTTACCCGATCCGAAGACC
CAGAAAAACAGCGCAGGCAATATGTAGGCAGCGGCTCCAATGATAAACAC
CCAGTGCCACTGATCGATTGTGTTCTCGTTCTTTGTAAAGGCGGCCACAA
TCAGAGGCGAAAAGATTCCGGGCGTGGTGCCAACACAGTTAATGATGCCG
TACAGCGTGCCCGCATAGTTGGGCGCCAGATCCTGTGAGTTGGCCAAATT
GGAGGCGGTGGCAGCTCCGTTGAAGCCCAGCGAAATGGTCATAATGGCAA
CGCACACATAGGGATCGCGACCAAAGTAGGCCAGGATGATCAGCATGACG
CCGGGCAAGATGTGAGAGGGCAGGCAGAAGGCCTTGCGCATGCGGGTCAC
CGACAACCAGCCACGTCGACGTATCCAATCCGCCACGGCGCCAAAACCGA
AGGCGCAGAGCAGACGTGCCACATGTGGCAGGCTGGACAGGAAGCCAGCG
GACGAGAGATTGAAGCCCAGGACCTCGCTCAAGAACTTGGGCGTGGCGGT
AATCAGGAAGAACAGACCCCACATGCTGCCGTAGTGGAGCATCATGAGCG
ACCAGAAGGGCAGCGACAGGACGAGCTCCTTGTATGGTGGCCACTTCTTC
TTGTTGCTCAGAGTGTCGCCCAAGCTGCTTTCGATATACTCCCGCTCCT
BO18042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-PA | 1398 | CG9864-RA | 665..1395 | 749..19 | 3655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-RB | 1673 | CG9864-RB | 826..1556 | 749..19 | 3655 | 100 | Minus |
CG9864-RA | 1638 | CG9864-RA | 791..1521 | 749..19 | 3655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20248774..20249055 | 417..698 | 1410 | 100 | Plus |
2R | 25286936 | 2R | 20248468..20248709 | 175..416 | 1210 | 100 | Plus |
2R | 25286936 | 2R | 20248247..20248404 | 19..176 | 790 | 100 | Plus |
2R | 25286936 | 2R | 20249114..20249166 | 697..749 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:41:09 has no hits.
BO18042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:27 Download gff for
BO18042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-PA | 665..1398 | 18..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:21 Download gff for
BO18042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 791..1527 | 10..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:11 Download gff for
BO18042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 791..1527 | 10..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:11 Download gff for
BO18042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20248241..20248402 | 10..174 | 97 | <- | Plus |
2R | 20248468..20248709 | 175..416 | 100 | <- | Plus |
2R | 20248774..20249053 | 417..696 | 100 | <- | Plus |
2R | 20249114..20249166 | 697..749 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:21 Download gff for
BO18042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16136279..16136558 | 417..696 | 100 | <- | Plus |
arm_2R | 16136619..16136671 | 697..749 | 100 | | Plus |
arm_2R | 16135746..16135907 | 10..174 | 97 | <- | Plus |
arm_2R | 16135973..16136214 | 175..416 | 100 | <- | Plus |
BO18042.5prime Sequence
799 bp (747 high quality bases) assembled on 2006-10-13
> BO18042.5prime
GAAGTTATCAGTCGACATGGCCTTCATGCCGTGCTTCTATGTGCCCAAGC
GGATTAACCTGGCGATCATGCTCTTCATGGCCTGCCTCCTCAGCTACATG
ATGCGAGTGAATCTCTCGATCAACATCATCGCCATGGTGGAGGACACGAG
CAGCCACGAGAATGGAACGGAGGTGGAGGCACTGCCCGATTATGGACCGC
GCTACAACTGGACGCAATCGGATCAGGCTCTGCTGCTGGGTGCCTATTTC
TATGGCTATATGATCACCTCACTGCCCGCCGGCACTTTGGCCGAGATGCT
GGGAGCCAGAAATGTGGCAGGTTACAGTTGCCTGGTGGCCGGCATCCTGA
CAGCTCTAACTCCGGCGGCAGCTGCCTGGGACAAATATGCGGTGTTTGCC
GTGCGTTTCTTGATCGGCTTCCTCAACGGTGTCGTGTATCCGTGTTGCCA
CAGCCTTGTTTCCAAGTGGTCGCCTCCGGATGAGAAGGGCAAGTTTGTGG
CCTCGCTGATGGGTGGCACTTTTGGCACCGTCATCACATGGCCCATTAGC
GGTGTGATCATCGAGAATCTGGGCTGGGATTGGGCCTTCTACATTGTGGG
CATATTCGTGCTGGTGGTGGTCGCTATATGGTTCTACCTTGTGGCAGATA
CTCCTGCCCAGCACAGTACGATCAGTCTGAAGGAGCGGGAGTATATCGAA
AGCAGCTTGGGCGACACTCTGAGCAACAAGAAGAAGTGGCCACCATACAA
GGAGCTCGTCCTGTCGCTGCCCTTCTGGTCGCTCATGATGCTCCACTAC
BO18042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-PA | 1398 | CG9864-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-RB | 1673 | CG9864-RB | 158..944 | 13..799 | 3920 | 99.9 | Plus |
CG9864-RA | 1638 | CG9864-RA | 123..909 | 13..799 | 3920 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20249114..20249656 | 733..191 | 2715 | 100 | Minus |
2R | 25286936 | 2R | 20249747..20249901 | 190..36 | 775 | 100 | Minus |
2R | 25286936 | 2R | 20248988..20249055 | 799..732 | 340 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 11:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NOF | 4347 | NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). | 696..747 | 353..302 | 107 | 67.3 | Minus |
BO18042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:28 Download gff for
BO18042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:53 Download gff for
BO18042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 123..909 | 13..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:07 Download gff for
BO18042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 123..909 | 13..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:07 Download gff for
BO18042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20248988..20249053 | 734..799 | 100 | <- | Minus |
2R | 20249114..20249656 | 191..733 | 100 | <- | Minus |
2R | 20249747..20249901 | 36..190 | 100 | <- | Minus |
2R | 20250208..20250230 | 13..35 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:53 Download gff for
BO18042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16136493..16136558 | 734..799 | 100 | <- | Minus |
arm_2R | 16136619..16137161 | 191..733 | 100 | <- | Minus |
arm_2R | 16137252..16137406 | 36..190 | 100 | <- | Minus |
arm_2R | 16137713..16137735 | 13..35 | 95 | | Minus |
BO18042.complete Sequence
1429 bp assembled on 2006-10-11
GenBank Submission: FJ634295
> BO18042.complete
GAAGTTATCAGTCGACATGGCCTTCATGCCGTGCTTCTATGTGCCCAAGC
GGATTAACCTGGCGATCATGCTCTTCATGGCCTGCCTCCTCAGCTACATG
ATGCGAGTGAATCTCTCGATCAACATCATCGCCATGGTGGAGGACACGAG
CAGCCACGAGAATGGAACGGAGGTGGAGGCACTGCCCGATTATGGACCGC
GCTACAACTGGACGCAATCGGATCAGGCTCTGCTGCTGGGTGCCTATTTC
TATGGCTATATGATCACCTCACTGCCCGCCGGCACTTTGGCCGAGATGCT
GGGAGCCAGAAATGTGGCAGGTTACAGTTGCCTGGTGGCCGGCATCCTGA
CAGCTCTAACTCCGGCGGCAGCTGCCTGGGACAAATATGCGGTGTTTGCC
GTGCGTTTCTTGATCGGCTTCCTCAACGGTGTCGTGTATCCGTGTTGCCA
CAGCCTTGTTTCCAAGTGGTCGCCTCCGGATGAGAAGGGCAAGTTTGTGG
CCTCGCTGATGGGTGGCACTTTTGGCACCGTCATCACATGGCCCATTAGC
GGTGTGATCATCGAGAATCTGGGCTGGGATTGGGCCTTCTACATTGTGGG
CATATTCGTGCTGGTGGTGGTCGCTATATGGTTCTACCTTGTGGCAGATA
CTCCTGCCCAGCACAGTACGATCAGTCTGAAGGAGCGGGAGTATATCGAA
AGCAGCTTGGGCGACACTCTGAGCAACAAGAAGAAGTGGCCACCATACAA
GGAGCTCGTCCTGTCGCTGCCCTTCTGGTCGCTCATGATGCTCCACTACG
GCAGCATGTGGGGTCTGTTCTTCCTGATTACCGCCACGCCCAAGTTCTTG
AGCGAGGTCCTGGGCTTCAATCTCTCGTCCGCTGGCTTCCTGTCCAGCCT
GCCACATGTGGCACGTCTGCTCTGCGCCTTCGGTTTTGGCGCCGTGGCGG
ATTGGATACGTCGACGTGGCTGGTTGTCGGTGACCCGCATGCGCAAGGCC
TTCTGCCTGCCCTCTCACATCTTGCCCGGCGTCATGCTGATCATCCTGGC
CTACTTTGGTCGCGATCCCTATGTGTGCGTTGCCATTATGACCATTTCGC
TGGGCTTCAACGGAGCTGCCACCGCCTCCAATTTGGCCAACTCACAGGAT
CTGGCGCCCAACTATGCGGGCACGCTGTACGGCATCATTAACTGTGTTGG
CACCACGCCCGGAATCTTTTCGCCTCTGATTGTGGCCGCCTTTACAAAGA
ACGAGAACACAATCGATCAGTGGCACTGGGTGTTTATCATTGGAGCCGCT
GCCTACATATTGCCTGCGCTGTTTTTCTGGGTCTTCGGATCGGGTAAAAT
CCAGAAGTGGAACGAGGTTCAGACCACCGAGTCGCGAGAGGATATTGTCA
ACACAAAGTTGGCAAGCTTTCTAGACCAT
BO18042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-RB | 1398 | CG9864-PB | 1..1395 | 17..1411 | 6975 | 100 | Plus |
CG9864-RA | 1398 | CG9864-PA | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-RB | 1673 | CG9864-RB | 158..1556 | 13..1411 | 6980 | 99.9 | Plus |
CG9864-RA | 1638 | CG9864-RA | 123..1521 | 13..1411 | 6980 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20249114..20249656 | 733..191 | 2715 | 100 | Minus |
2R | 25286936 | 2R | 20248774..20249055 | 1013..732 | 1410 | 100 | Minus |
2R | 25286936 | 2R | 20248468..20248709 | 1255..1014 | 1210 | 100 | Minus |
2R | 25286936 | 2R | 20248247..20248404 | 1411..1254 | 790 | 100 | Minus |
2R | 25286936 | 2R | 20249747..20249901 | 190..36 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:55:54 has no hits.
BO18042.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:51 Download gff for
BO18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 1..1398 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:12 Download gff for
BO18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 97..1501 | 13..1420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:12 Download gff for
BO18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 127..1521 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:51 Download gff for
BO18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 97..1501 | 13..1420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:10 Download gff for
BO18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9864-RA | 127..1521 | 17..1413 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:10 Download gff for
BO18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20249747..20249901 | 36..190 | 100 | <- | Minus |
2R | 20250208..20250226 | 17..35 | 100 | | Minus |
2R | 20248245..20248402 | 1256..1413 | 98 | <- | Minus |
2R | 20248468..20248709 | 1014..1255 | 100 | <- | Minus |
2R | 20248774..20249053 | 734..1013 | 100 | <- | Minus |
2R | 20249114..20249656 | 191..733 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:12 Download gff for
BO18042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16135750..16135907 | 1256..1413 | 98 | <- | Minus |
arm_2R | 16135973..16136214 | 1014..1255 | 100 | <- | Minus |
arm_2R | 16136279..16136558 | 734..1013 | 100 | <- | Minus |
arm_2R | 16136619..16137161 | 191..733 | 100 | <- | Minus |
arm_2R | 16137252..16137406 | 36..190 | 100 | <- | Minus |
arm_2R | 16137713..16137731 | 17..35 | 100 | | Minus |
BO18042.pep Sequence
Translation from 16 to 1429
> BO18042.pep
MAFMPCFYVPKRINLAIMLFMACLLSYMMRVNLSINIIAMVEDTSSHENG
TEVEALPDYGPRYNWTQSDQALLLGAYFYGYMITSLPAGTLAEMLGARNV
AGYSCLVAGILTALTPAAAAWDKYAVFAVRFLIGFLNGVVYPCCHSLVSK
WSPPDEKGKFVASLMGGTFGTVITWPISGVIIENLGWDWAFYIVGIFVLV
VVAIWFYLVADTPAQHSTISLKEREYIESSLGDTLSNKKKWPPYKELVLS
LPFWSLMMLHYGSMWGLFFLITATPKFLSEVLGFNLSSAGFLSSLPHVAR
LLCAFGFGAVADWIRRRGWLSVTRMRKAFCLPSHILPGVMLIILAYFGRD
PYVCVAIMTISLGFNGAATASNLANSQDLAPNYAGTLYGIINCVGTTPGI
FSPLIVAAFTKNENTIDQWHWVFIIGAAAYILPALFFWVFGSGKIQKWNE
VQTTESREDIVNTKLASFLDH
BO18042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9864-PB | 465 | CG9864-PB | 1..465 | 1..465 | 2463 | 100 | Plus |
CG9864-PA | 465 | CG9864-PA | 1..465 | 1..465 | 2463 | 100 | Plus |
CG3036-PB | 493 | CG3036-PB | 15..470 | 3..449 | 778 | 36.2 | Plus |
CG3036-PA | 493 | CG3036-PA | 15..470 | 3..449 | 778 | 36.2 | Plus |
NaPi-T-PB | 524 | CG10207-PB | 4..469 | 9..449 | 750 | 32.4 | Plus |