Clone BO18042 Report

Search the DGRC for BO18042

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG9864-RA
Protein status:BO18042.pep: validated full length
Sequenced Size:1429

Clone Sequence Records

BO18042.3prime Sequence

749 bp (701 high quality bases) assembled on 2006-10-13

> BO18042.3prime
ATGGTCTAGAAAGCTTGCCAACTTTGTGTTGACAATATCCTCTCGCGACT
CGGTGGTCTGAACCTCGTTCCACTTCTGGATTTTACCCGATCCGAAGACC
CAGAAAAACAGCGCAGGCAATATGTAGGCAGCGGCTCCAATGATAAACAC
CCAGTGCCACTGATCGATTGTGTTCTCGTTCTTTGTAAAGGCGGCCACAA
TCAGAGGCGAAAAGATTCCGGGCGTGGTGCCAACACAGTTAATGATGCCG
TACAGCGTGCCCGCATAGTTGGGCGCCAGATCCTGTGAGTTGGCCAAATT
GGAGGCGGTGGCAGCTCCGTTGAAGCCCAGCGAAATGGTCATAATGGCAA
CGCACACATAGGGATCGCGACCAAAGTAGGCCAGGATGATCAGCATGACG
CCGGGCAAGATGTGAGAGGGCAGGCAGAAGGCCTTGCGCATGCGGGTCAC
CGACAACCAGCCACGTCGACGTATCCAATCCGCCACGGCGCCAAAACCGA
AGGCGCAGAGCAGACGTGCCACATGTGGCAGGCTGGACAGGAAGCCAGCG
GACGAGAGATTGAAGCCCAGGACCTCGCTCAAGAACTTGGGCGTGGCGGT
AATCAGGAAGAACAGACCCCACATGCTGCCGTAGTGGAGCATCATGAGCG
ACCAGAAGGGCAGCGACAGGACGAGCTCCTTGTATGGTGGCCACTTCTTC
TTGTTGCTCAGAGTGTCGCCCAAGCTGCTTTCGATATACTCCCGCTCCT

BO18042.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-PA 1398 CG9864-RA 665..1395 749..19 3655 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-RB 1673 CG9864-RB 826..1556 749..19 3655 100 Minus
CG9864-RA 1638 CG9864-RA 791..1521 749..19 3655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20248774..20249055 417..698 1410 100 Plus
2R 25286936 2R 20248468..20248709 175..416 1210 100 Plus
2R 25286936 2R 20248247..20248404 19..176 790 100 Plus
2R 25286936 2R 20249114..20249166 697..749 265 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:41:09 has no hits.

BO18042.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:27 Download gff for BO18042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-PA 665..1398 18..749 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:21 Download gff for BO18042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 791..1527 10..749 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:11 Download gff for BO18042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 791..1527 10..749 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:11 Download gff for BO18042.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20248241..20248402 10..174 97 <- Plus
2R 20248468..20248709 175..416 100 <- Plus
2R 20248774..20249053 417..696 100 <- Plus
2R 20249114..20249166 697..749 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:21 Download gff for BO18042.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16136279..16136558 417..696 100 <- Plus
arm_2R 16136619..16136671 697..749 100   Plus
arm_2R 16135746..16135907 10..174 97 <- Plus
arm_2R 16135973..16136214 175..416 100 <- Plus

BO18042.5prime Sequence

799 bp (747 high quality bases) assembled on 2006-10-13

> BO18042.5prime
GAAGTTATCAGTCGACATGGCCTTCATGCCGTGCTTCTATGTGCCCAAGC
GGATTAACCTGGCGATCATGCTCTTCATGGCCTGCCTCCTCAGCTACATG
ATGCGAGTGAATCTCTCGATCAACATCATCGCCATGGTGGAGGACACGAG
CAGCCACGAGAATGGAACGGAGGTGGAGGCACTGCCCGATTATGGACCGC
GCTACAACTGGACGCAATCGGATCAGGCTCTGCTGCTGGGTGCCTATTTC
TATGGCTATATGATCACCTCACTGCCCGCCGGCACTTTGGCCGAGATGCT
GGGAGCCAGAAATGTGGCAGGTTACAGTTGCCTGGTGGCCGGCATCCTGA
CAGCTCTAACTCCGGCGGCAGCTGCCTGGGACAAATATGCGGTGTTTGCC
GTGCGTTTCTTGATCGGCTTCCTCAACGGTGTCGTGTATCCGTGTTGCCA
CAGCCTTGTTTCCAAGTGGTCGCCTCCGGATGAGAAGGGCAAGTTTGTGG
CCTCGCTGATGGGTGGCACTTTTGGCACCGTCATCACATGGCCCATTAGC
GGTGTGATCATCGAGAATCTGGGCTGGGATTGGGCCTTCTACATTGTGGG
CATATTCGTGCTGGTGGTGGTCGCTATATGGTTCTACCTTGTGGCAGATA
CTCCTGCCCAGCACAGTACGATCAGTCTGAAGGAGCGGGAGTATATCGAA
AGCAGCTTGGGCGACACTCTGAGCAACAAGAAGAAGTGGCCACCATACAA
GGAGCTCGTCCTGTCGCTGCCCTTCTGGTCGCTCATGATGCTCCACTAC

BO18042.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-PA 1398 CG9864-RA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-RB 1673 CG9864-RB 158..944 13..799 3920 99.9 Plus
CG9864-RA 1638 CG9864-RA 123..909 13..799 3920 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20249114..20249656 733..191 2715 100 Minus
2R 25286936 2R 20249747..20249901 190..36 775 100 Minus
2R 25286936 2R 20248988..20249055 799..732 340 100 Minus
Blast to na_te.dros performed 2015-02-08 11:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 696..747 353..302 107 67.3 Minus

BO18042.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:28 Download gff for BO18042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:53 Download gff for BO18042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 123..909 13..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:07 Download gff for BO18042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 123..909 13..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:07 Download gff for BO18042.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20248988..20249053 734..799 100 <- Minus
2R 20249114..20249656 191..733 100 <- Minus
2R 20249747..20249901 36..190 100 <- Minus
2R 20250208..20250230 13..35 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:53 Download gff for BO18042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16136493..16136558 734..799 100 <- Minus
arm_2R 16136619..16137161 191..733 100 <- Minus
arm_2R 16137252..16137406 36..190 100 <- Minus
arm_2R 16137713..16137735 13..35 95   Minus

BO18042.complete Sequence

1429 bp assembled on 2006-10-11

GenBank Submission: FJ634295

> BO18042.complete
GAAGTTATCAGTCGACATGGCCTTCATGCCGTGCTTCTATGTGCCCAAGC
GGATTAACCTGGCGATCATGCTCTTCATGGCCTGCCTCCTCAGCTACATG
ATGCGAGTGAATCTCTCGATCAACATCATCGCCATGGTGGAGGACACGAG
CAGCCACGAGAATGGAACGGAGGTGGAGGCACTGCCCGATTATGGACCGC
GCTACAACTGGACGCAATCGGATCAGGCTCTGCTGCTGGGTGCCTATTTC
TATGGCTATATGATCACCTCACTGCCCGCCGGCACTTTGGCCGAGATGCT
GGGAGCCAGAAATGTGGCAGGTTACAGTTGCCTGGTGGCCGGCATCCTGA
CAGCTCTAACTCCGGCGGCAGCTGCCTGGGACAAATATGCGGTGTTTGCC
GTGCGTTTCTTGATCGGCTTCCTCAACGGTGTCGTGTATCCGTGTTGCCA
CAGCCTTGTTTCCAAGTGGTCGCCTCCGGATGAGAAGGGCAAGTTTGTGG
CCTCGCTGATGGGTGGCACTTTTGGCACCGTCATCACATGGCCCATTAGC
GGTGTGATCATCGAGAATCTGGGCTGGGATTGGGCCTTCTACATTGTGGG
CATATTCGTGCTGGTGGTGGTCGCTATATGGTTCTACCTTGTGGCAGATA
CTCCTGCCCAGCACAGTACGATCAGTCTGAAGGAGCGGGAGTATATCGAA
AGCAGCTTGGGCGACACTCTGAGCAACAAGAAGAAGTGGCCACCATACAA
GGAGCTCGTCCTGTCGCTGCCCTTCTGGTCGCTCATGATGCTCCACTACG
GCAGCATGTGGGGTCTGTTCTTCCTGATTACCGCCACGCCCAAGTTCTTG
AGCGAGGTCCTGGGCTTCAATCTCTCGTCCGCTGGCTTCCTGTCCAGCCT
GCCACATGTGGCACGTCTGCTCTGCGCCTTCGGTTTTGGCGCCGTGGCGG
ATTGGATACGTCGACGTGGCTGGTTGTCGGTGACCCGCATGCGCAAGGCC
TTCTGCCTGCCCTCTCACATCTTGCCCGGCGTCATGCTGATCATCCTGGC
CTACTTTGGTCGCGATCCCTATGTGTGCGTTGCCATTATGACCATTTCGC
TGGGCTTCAACGGAGCTGCCACCGCCTCCAATTTGGCCAACTCACAGGAT
CTGGCGCCCAACTATGCGGGCACGCTGTACGGCATCATTAACTGTGTTGG
CACCACGCCCGGAATCTTTTCGCCTCTGATTGTGGCCGCCTTTACAAAGA
ACGAGAACACAATCGATCAGTGGCACTGGGTGTTTATCATTGGAGCCGCT
GCCTACATATTGCCTGCGCTGTTTTTCTGGGTCTTCGGATCGGGTAAAAT
CCAGAAGTGGAACGAGGTTCAGACCACCGAGTCGCGAGAGGATATTGTCA
ACACAAAGTTGGCAAGCTTTCTAGACCAT

BO18042.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-RB 1398 CG9864-PB 1..1395 17..1411 6975 100 Plus
CG9864-RA 1398 CG9864-PA 1..1395 17..1411 6975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-RB 1673 CG9864-RB 158..1556 13..1411 6980 99.9 Plus
CG9864-RA 1638 CG9864-RA 123..1521 13..1411 6980 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20249114..20249656 733..191 2715 100 Minus
2R 25286936 2R 20248774..20249055 1013..732 1410 100 Minus
2R 25286936 2R 20248468..20248709 1255..1014 1210 100 Minus
2R 25286936 2R 20248247..20248404 1411..1254 790 100 Minus
2R 25286936 2R 20249747..20249901 190..36 775 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:55:54 has no hits.

BO18042.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:51 Download gff for BO18042.complete
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 1..1398 17..1412 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:12 Download gff for BO18042.complete
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 97..1501 13..1420 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:12 Download gff for BO18042.complete
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 127..1521 17..1413 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:51 Download gff for BO18042.complete
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 97..1501 13..1420 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:10 Download gff for BO18042.complete
Subject Subject Range Query Range Percent Splice Strand
CG9864-RA 127..1521 17..1413 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:10 Download gff for BO18042.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20249747..20249901 36..190 100 <- Minus
2R 20250208..20250226 17..35 100   Minus
2R 20248245..20248402 1256..1413 98 <- Minus
2R 20248468..20248709 1014..1255 100 <- Minus
2R 20248774..20249053 734..1013 100 <- Minus
2R 20249114..20249656 191..733 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:12 Download gff for BO18042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16135750..16135907 1256..1413 98 <- Minus
arm_2R 16135973..16136214 1014..1255 100 <- Minus
arm_2R 16136279..16136558 734..1013 100 <- Minus
arm_2R 16136619..16137161 191..733 100 <- Minus
arm_2R 16137252..16137406 36..190 100 <- Minus
arm_2R 16137713..16137731 17..35 100   Minus

BO18042.pep Sequence

Translation from 16 to 1429

> BO18042.pep
MAFMPCFYVPKRINLAIMLFMACLLSYMMRVNLSINIIAMVEDTSSHENG
TEVEALPDYGPRYNWTQSDQALLLGAYFYGYMITSLPAGTLAEMLGARNV
AGYSCLVAGILTALTPAAAAWDKYAVFAVRFLIGFLNGVVYPCCHSLVSK
WSPPDEKGKFVASLMGGTFGTVITWPISGVIIENLGWDWAFYIVGIFVLV
VVAIWFYLVADTPAQHSTISLKEREYIESSLGDTLSNKKKWPPYKELVLS
LPFWSLMMLHYGSMWGLFFLITATPKFLSEVLGFNLSSAGFLSSLPHVAR
LLCAFGFGAVADWIRRRGWLSVTRMRKAFCLPSHILPGVMLIILAYFGRD
PYVCVAIMTISLGFNGAATASNLANSQDLAPNYAGTLYGIINCVGTTPGI
FSPLIVAAFTKNENTIDQWHWVFIIGAAAYILPALFFWVFGSGKIQKWNE
VQTTESREDIVNTKLASFLDH

BO18042.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9864-PB 465 CG9864-PB 1..465 1..465 2463 100 Plus
CG9864-PA 465 CG9864-PA 1..465 1..465 2463 100 Plus
CG3036-PB 493 CG3036-PB 15..470 3..449 778 36.2 Plus
CG3036-PA 493 CG3036-PA 15..470 3..449 778 36.2 Plus
NaPi-T-PB 524 CG10207-PB 4..469 9..449 750 32.4 Plus