Clone BO18047 Report

Search the DGRC for BO18047

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG13124-RA
Protein status:BO18047.pep: validated full length
Sequenced Size:1564

Clone Sequence Records

BO18047.3prime Sequence

926 bp (713 high quality bases) assembled on 2006-10-13

> BO18047.3prime
ATGGTCTAGAAAGCTTGCATTGTTAGTGTGCGTGTAGTAAAGAACCGTAT
TGCCTGGTAGCTGCCAGTGGGAGGCCTTCAGCTCGATGAGTTGGAGAAGA
GTGCGCCGAATGGAGGCCGCAGATTCGCCGGCATTCAAAAAGGCATCGCG
AACCAGACTCATGAGTAACTCCAGTTGCTGGGGCAACTGCTGCTCCATGT
CCTGGCCAATACAGGTCAAAACATAAAACAAGCACTCAATCTCTGAAAGT
GATCTAATGGGTGGACGCACGCAATCCCCGCAACATTTGGAGAGCAGACT
AAGCAGTACCAGTGGCGGAGGAGTGCCCTCGTGGTGGGTGCGTAGCTGGA
GCTGCCGACGTTTCAGCTGACAAAACATTTCCGTAAGGAAGGCCATAAAG
GCAGTGAATCGGACACGTGATGGCGACTTCATGCCCTGGATGGCAAACAA
CAGCTTCTCACGCTCCTGGTACCACTGACGGCATGTGTTGAGGAGCGCCT
CGAGAAACGTTTCCTTCTGCTCCCGGGCAATGATGTTCAGACACAGTCGT
GATATTGGCAGAGCAAAACGGCGACTCTCCACCGCGCGTTTGATGAACTG
CGATGTCAGTTCCATGAGACAGCGAGAGTTCAGTTTATTGGGATCCTCCA
GGGCCGTGTCAATAAGCGCCTGGATCTCTGGCGTGAACTGTCCTATGTCG
GCCACCTCGTTGCCCAAACCTAGTCCCAATCCGGCCATTCCACGAGTAAG
GGCATCCGCCGACGACAACGACTTGGAGCGTTGCAGTGCATTTCCATTCA
TGTAAGGATCTACTCCATTAATATTCGCCTGATAAGGCTGAGCATAGTTG
TTGTTTAGTTGACCAAACTGATTATGCGAAGCCCCTTTGTGACCTCGGGG
CTCAGGTGCAAACTTTACCCGATTTG

BO18047.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-PA 1533 CG13124-RA 623..1530 926..19 4490 99.7 Minus
CG13124-PB 1533 CG13124-RB 623..1530 926..19 4490 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-RJ 3114 CG13124-RJ 1766..2673 926..19 4510 99.8 Minus
CG13124-RI 2854 CG13124-RI 1606..2513 926..19 4510 99.8 Minus
CG13124-RH 3084 CG13124-RH 1836..2743 926..19 4510 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9904282..9904754 454..926 2335 99.6 Plus
2L 23513712 2L 9903720..9903943 19..242 1120 100 Plus
2L 23513712 2L 9904004..9904218 241..455 1075 100 Plus
Blast to na_te.dros performed 2015-02-10 15:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3699..3752 835..782 108 66.7 Minus

BO18047.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:31 Download gff for BO18047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-PB 623..1533 18..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:10 Download gff for BO18047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-RH 1836..2743 19..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:10 Download gff for BO18047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-RH 1836..2743 19..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:10 Download gff for BO18047.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9903720..9903941 19..240 100 <- Plus
2L 9904004..9904216 241..453 100 <- Plus
2L 9904282..9904754 454..926 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:10 Download gff for BO18047.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9903720..9903941 19..240 100 <- Plus
arm_2L 9904004..9904216 241..453 100 <- Plus
arm_2L 9904282..9904754 454..926 99   Plus

BO18047.5prime Sequence

787 bp (785 high quality bases) assembled on 2006-10-13

> BO18047.5prime
GAAGTTATCAGTCGACATGGCCGAAAAGGTGGAACTACTGGCCCAGGCCA
GCATGAATGGCCAACAGAATGATACGCGGAAGGTGCGCAAATCACCGGAA
TTTCAGCCCGGCGTTATCTCCCGCGAACGCAGCTTTGTGCGCACCTCAAA
TCAACAGAATATCAACAAACGGCGAAGTCTGGCTTTCAACGTACCTGGCA
ATCAGACGGGACAGATGAGGGGCAAACCAGCCATGGATATCTACAGGCCT
CCCAATGTGCGCGGAGAGCTAGCCGCTCCAGCCGGTGGTGTCGGTGGTGA
TGGTCCGAATGGTGCTATCGGTGGTGTCGCCAACAAGCTGAACGTCAATG
CCCAGGAGTTCACAATGACAACCAGCTCCGGGGCACCGGCCGAGGCACTC
GGCAACCGTTCGTCGCTAATACTTCCGCTCACCAATGGACCCGGAGTGGG
AGTTGCACCGGGTTTGGGTCCGTACGGAAACGTGAATCGCCGCCAGGCCG
GACACTCCCTCGGCAACATGCCGGGCTTGAAGGCCAACCACCGGTCGATC
CTGGTGACGTATCCAATCAATACCGGTGCCCTCAGCGGTCAGCTGCCGCT
AATGAACTCGCCATCCAGTGGAAATATACTTCACACAACAAATCGTGTAA
AGTTTGCACCTGAGCCCCGAGGTCACAAAGTGGCTTCGCATAATCAGTTT
GGTCAACTAAACAACAACTATGCTCAGCCTTATCAGGCGAATATTAATGG
AGTAGATCCTTACATGAATGGGAATGCACTGCAACGC

BO18047.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-PA 1533 CG13124-RA 1..771 17..787 3830 99.8 Plus
CG13124-PB 1533 CG13124-RB 1..771 17..787 3830 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-RH 3084 CG13124-RH 1214..1984 17..787 3840 99.9 Plus
CG13124-RG 3137 CG13124-RG 1267..2037 17..787 3840 99.9 Plus
CG13124-RF 2977 CG13124-RF 1107..1877 17..787 3840 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9904827..9905053 634..408 1135 100 Minus
2L 23513712 2L 9905138..9905291 408..255 770 100 Minus
2L 23513712 2L 9904606..9904758 787..635 750 99.3 Minus
2L 23513712 2L 9906033..9906173 157..17 705 100 Minus
2L 23513712 2L 9905875..9905974 254..155 500 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:55:44 has no hits.

BO18047.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:31 Download gff for BO18047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-PB 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:14 Download gff for BO18047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-RF 1103..1877 9..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:12 Download gff for BO18047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13124-RF 1103..1877 9..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:12 Download gff for BO18047.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9904606..9904758 635..787 99 <- Minus
2L 9904827..9905052 409..634 100 <- Minus
2L 9905138..9905291 255..408 100 <- Minus
2L 9905875..9905971 158..254 100 <- Minus
2L 9906033..9906177 9..157 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:14 Download gff for BO18047.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9904606..9904758 635..787 99 <- Minus
arm_2L 9904827..9905052 409..634 100 <- Minus
arm_2L 9905138..9905291 255..408 100 <- Minus
arm_2L 9905875..9905971 158..254 100 <- Minus
arm_2L 9906033..9906177 9..157 97   Minus

BO18047.complete Sequence

1564 bp assembled on 2006-10-11

GenBank Submission: FJ634296

> BO18047.complete
GAAGTTATCAGTCGACATGGCCGAAAAGGTGGAACTACTGGCCCAGGCCA
GCATGAATGGCCAACAGAATGATACGCGGAAGGTGCGCAAATCACCGGAA
TTTCAGCCCGGCGTTATCTCCCGCGAACGCAGCTTTGTGCGCACCTCAAA
TCAACAGAATATCAACAAACGGCGAAGTCTGGCTTTCAACGTACCTGGCA
ATCAGACGGGACAGATGAGGGGCAAACCAGCCATGGATATCTACAGGCCT
CCCAATGTGCGCGGAGAGCTAGCCGCTCCAGCCGGTGGTGTCGGTGGTGA
TGGTCCGAATGGTGCTATCGGTGGTGTCGCCAACAAGCTGAACGTCAATG
CCCAGGAGTTCACAATGACAACCAGCTCCGGGGCACCGGCCGAGGCACTC
GGCAACCGTTCGTCGCTAATACTTCCGCTCACCAATGGACCCGGAGTGGG
AGTTGCACCGGGTTTGGGTCCGTACGGAAACGTGAATCGCCGCCAGGCCG
GACACTCCCTCGGCAACATGCCGGGCTTGAAGGCCAACCACCGGTCGATC
CTGGTGACGTATCCAATCAATACCGGTGCCCTCAGCGGTCAGCTGCCGCT
AATGAACTCGCCATCCAGTGGAAATATACTTCACACAACAAATCGTGTAA
AGTTTGCACCTGAGCCCCGAGGTCACAAAGTGGCTTCGCATAATCAGTTT
GGTCAACTAAACAACAACTATGCTCAGCCTTATCAGGCGAATATTAATGG
AGTAGATCCTTACATGAATGGAAATGCACTGCAACGCTCCAAGTCGTTGT
CGTCGGCGGATGCCCTTACTCGTGGAATGGCCGGATTGGGACTAGGTTTG
GGCAACGAGGTGGCCGACATAGGACAGTTCACGCCAGAGATCCAGGCGCT
TATTGACACGGCCCTGGAGGATCCCAATAAACTGAACTCTCGCTGTCTCA
TGGAACTGACATCGCAGTTCATCAAACGCGCGGTGGAGAGTCGCCGTTTT
GCTCTGCCAATATCACGACTGTGTCTGAACATCATTGCCCGGGAGCAGAA
GGAAACGTTTCTCGAGGCGCTCCTCAACACATGCCGTCAGTGGTACCAGG
AGCGTGAGAAGCTGTTGTTTGCCATCCAGGGCATGAAGTCGCCATCACGT
GTCCGATTCACTGCCTTTATGGCCTTCCTTACGGAAATGTTTTGTCAGCT
GAAACGTCGGCAGCTCCAGCTACGCACCCACCACGAGGGCACTCCTCCGC
CACTGGTACTGCTTAGTCTGCTCTCCAAATGTTGCGGGGATTGCGTGCGT
CCACCCATTAGATCACTTTCAGAGATTGAGTGCTTGTTTTATGTTTTGAC
CTGTATTGGCCAGGACATGGAGCAGCAGTTGCCCCAGCAACTGGAGTTAC
TCATGAGTCTGGTTCGCGATGCCTTTTTGAATGCCGGCGAATCTGCGGCC
TCCATTCGGCGCACTCTTCTCCAACTCATCGAGCTGAAGGCCTCCCACTG
GCAGCTACCAGGCAATACGGTTCTTTACTACACGCACACTAACAATGCAA
GCTTTCTAGACCAT

BO18047.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-RH 1533 CG13124-PH 1..1530 17..1546 7650 100 Plus
CG13124-RG 1533 CG13124-PG 1..1530 17..1546 7650 100 Plus
CG13124-RF 1533 CG13124-PF 1..1530 17..1546 7650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-RH 3084 CG13124-RH 1214..2743 17..1546 7650 100 Plus
CG13124-RG 3137 CG13124-RG 1267..2796 17..1546 7650 100 Plus
CG13124-RF 2977 CG13124-RF 1107..2636 17..1546 7650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9904282..9904758 1111..635 2385 100 Minus
2L 23513712 2L 9904827..9905053 634..408 1135 100 Minus
2L 23513712 2L 9903720..9903943 1546..1323 1120 100 Minus
2L 23513712 2L 9904004..9904218 1324..1110 1075 100 Minus
2L 23513712 2L 9905138..9905291 408..255 770 100 Minus
2L 23513712 2L 9906033..9906173 157..17 705 100 Minus
2L 23513712 2L 9905875..9905974 254..155 500 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:03:59 has no hits.

BO18047.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:52 Download gff for BO18047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13124-RB 1..1533 17..1547 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:14 Download gff for BO18047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13124-RB 1196..2729 9..1546 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:43 Download gff for BO18047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13124-RF 1107..2636 17..1548 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:52 Download gff for BO18047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13124-RB 1196..2729 9..1546 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:19 Download gff for BO18047.complete
Subject Subject Range Query Range Percent Splice Strand
CG13124-RF 1107..2636 17..1548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:19 Download gff for BO18047.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9904827..9905052 409..634 100 <- Minus
2L 9905138..9905291 255..408 100 <- Minus
2L 9905875..9905971 158..254 100 <- Minus
2L 9906033..9906173 17..157 100   Minus
2L 9903718..9903941 1325..1548 99 <- Minus
2L 9904004..9904216 1112..1324 100 <- Minus
2L 9904282..9904758 635..1111 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:43 Download gff for BO18047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9905875..9905971 158..254 100 <- Minus
arm_2L 9906033..9906173 17..157 100   Minus
arm_2L 9903718..9903941 1325..1548 99 <- Minus
arm_2L 9904004..9904216 1112..1324 100 <- Minus
arm_2L 9904282..9904758 635..1111 100 <- Minus
arm_2L 9904827..9905052 409..634 100 <- Minus
arm_2L 9905138..9905291 255..408 100 <- Minus

BO18047.pep Sequence

Translation from 16 to 1564

> BO18047.pep
MAEKVELLAQASMNGQQNDTRKVRKSPEFQPGVISRERSFVRTSNQQNIN
KRRSLAFNVPGNQTGQMRGKPAMDIYRPPNVRGELAAPAGGVGGDGPNGA
IGGVANKLNVNAQEFTMTTSSGAPAEALGNRSSLILPLTNGPGVGVAPGL
GPYGNVNRRQAGHSLGNMPGLKANHRSILVTYPINTGALSGQLPLMNSPS
SGNILHTTNRVKFAPEPRGHKVASHNQFGQLNNNYAQPYQANINGVDPYM
NGNALQRSKSLSSADALTRGMAGLGLGLGNEVADIGQFTPEIQALIDTAL
EDPNKLNSRCLMELTSQFIKRAVESRRFALPISRLCLNIIAREQKETFLE
ALLNTCRQWYQEREKLLFAIQGMKSPSRVRFTAFMAFLTEMFCQLKRRQL
QLRTHHEGTPPPLVLLSLLSKCCGDCVRPPIRSLSEIECLFYVLTCIGQD
MEQQLPQQLELLMSLVRDAFLNAGESAASIRRTLLQLIELKASHWQLPGN
TVLYYTHTNNASFLDH

BO18047.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13124-PH 510 CG13124-PH 1..510 1..510 2637 100 Plus
CG13124-PG 510 CG13124-PG 1..510 1..510 2637 100 Plus
CG13124-PF 510 CG13124-PF 1..510 1..510 2637 100 Plus
CG13124-PE 510 CG13124-PE 1..510 1..510 2637 100 Plus
CG13124-PB 510 CG13124-PB 1..510 1..510 2637 100 Plus