Clone Sequence Records
BO18047.3prime Sequence
926 bp (713 high quality bases) assembled on 2006-10-13
> BO18047.3prime
ATGGTCTAGAAAGCTTGCATTGTTAGTGTGCGTGTAGTAAAGAACCGTAT
TGCCTGGTAGCTGCCAGTGGGAGGCCTTCAGCTCGATGAGTTGGAGAAGA
GTGCGCCGAATGGAGGCCGCAGATTCGCCGGCATTCAAAAAGGCATCGCG
AACCAGACTCATGAGTAACTCCAGTTGCTGGGGCAACTGCTGCTCCATGT
CCTGGCCAATACAGGTCAAAACATAAAACAAGCACTCAATCTCTGAAAGT
GATCTAATGGGTGGACGCACGCAATCCCCGCAACATTTGGAGAGCAGACT
AAGCAGTACCAGTGGCGGAGGAGTGCCCTCGTGGTGGGTGCGTAGCTGGA
GCTGCCGACGTTTCAGCTGACAAAACATTTCCGTAAGGAAGGCCATAAAG
GCAGTGAATCGGACACGTGATGGCGACTTCATGCCCTGGATGGCAAACAA
CAGCTTCTCACGCTCCTGGTACCACTGACGGCATGTGTTGAGGAGCGCCT
CGAGAAACGTTTCCTTCTGCTCCCGGGCAATGATGTTCAGACACAGTCGT
GATATTGGCAGAGCAAAACGGCGACTCTCCACCGCGCGTTTGATGAACTG
CGATGTCAGTTCCATGAGACAGCGAGAGTTCAGTTTATTGGGATCCTCCA
GGGCCGTGTCAATAAGCGCCTGGATCTCTGGCGTGAACTGTCCTATGTCG
GCCACCTCGTTGCCCAAACCTAGTCCCAATCCGGCCATTCCACGAGTAAG
GGCATCCGCCGACGACAACGACTTGGAGCGTTGCAGTGCATTTCCATTCA
TGTAAGGATCTACTCCATTAATATTCGCCTGATAAGGCTGAGCATAGTTG
TTGTTTAGTTGACCAAACTGATTATGCGAAGCCCCTTTGTGACCTCGGGG
CTCAGGTGCAAACTTTACCCGATTTG
BO18047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-PA | 1533 | CG13124-RA | 623..1530 | 926..19 | 4490 | 99.7 | Minus |
CG13124-PB | 1533 | CG13124-RB | 623..1530 | 926..19 | 4490 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-RJ | 3114 | CG13124-RJ | 1766..2673 | 926..19 | 4510 | 99.8 | Minus |
CG13124-RI | 2854 | CG13124-RI | 1606..2513 | 926..19 | 4510 | 99.8 | Minus |
CG13124-RH | 3084 | CG13124-RH | 1836..2743 | 926..19 | 4510 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9904282..9904754 | 454..926 | 2335 | 99.6 | Plus |
2L | 23513712 | 2L | 9903720..9903943 | 19..242 | 1120 | 100 | Plus |
2L | 23513712 | 2L | 9904004..9904218 | 241..455 | 1075 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 15:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3699..3752 | 835..782 | 108 | 66.7 | Minus |
BO18047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:31 Download gff for
BO18047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-PB | 623..1533 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:10 Download gff for
BO18047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RH | 1836..2743 | 19..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:10 Download gff for
BO18047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RH | 1836..2743 | 19..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:10 Download gff for
BO18047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9903720..9903941 | 19..240 | 100 | <- | Plus |
2L | 9904004..9904216 | 241..453 | 100 | <- | Plus |
2L | 9904282..9904754 | 454..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:10 Download gff for
BO18047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9903720..9903941 | 19..240 | 100 | <- | Plus |
arm_2L | 9904004..9904216 | 241..453 | 100 | <- | Plus |
arm_2L | 9904282..9904754 | 454..926 | 99 | | Plus |
BO18047.5prime Sequence
787 bp (785 high quality bases) assembled on 2006-10-13
> BO18047.5prime
GAAGTTATCAGTCGACATGGCCGAAAAGGTGGAACTACTGGCCCAGGCCA
GCATGAATGGCCAACAGAATGATACGCGGAAGGTGCGCAAATCACCGGAA
TTTCAGCCCGGCGTTATCTCCCGCGAACGCAGCTTTGTGCGCACCTCAAA
TCAACAGAATATCAACAAACGGCGAAGTCTGGCTTTCAACGTACCTGGCA
ATCAGACGGGACAGATGAGGGGCAAACCAGCCATGGATATCTACAGGCCT
CCCAATGTGCGCGGAGAGCTAGCCGCTCCAGCCGGTGGTGTCGGTGGTGA
TGGTCCGAATGGTGCTATCGGTGGTGTCGCCAACAAGCTGAACGTCAATG
CCCAGGAGTTCACAATGACAACCAGCTCCGGGGCACCGGCCGAGGCACTC
GGCAACCGTTCGTCGCTAATACTTCCGCTCACCAATGGACCCGGAGTGGG
AGTTGCACCGGGTTTGGGTCCGTACGGAAACGTGAATCGCCGCCAGGCCG
GACACTCCCTCGGCAACATGCCGGGCTTGAAGGCCAACCACCGGTCGATC
CTGGTGACGTATCCAATCAATACCGGTGCCCTCAGCGGTCAGCTGCCGCT
AATGAACTCGCCATCCAGTGGAAATATACTTCACACAACAAATCGTGTAA
AGTTTGCACCTGAGCCCCGAGGTCACAAAGTGGCTTCGCATAATCAGTTT
GGTCAACTAAACAACAACTATGCTCAGCCTTATCAGGCGAATATTAATGG
AGTAGATCCTTACATGAATGGGAATGCACTGCAACGC
BO18047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-PA | 1533 | CG13124-RA | 1..771 | 17..787 | 3830 | 99.8 | Plus |
CG13124-PB | 1533 | CG13124-RB | 1..771 | 17..787 | 3830 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-RH | 3084 | CG13124-RH | 1214..1984 | 17..787 | 3840 | 99.9 | Plus |
CG13124-RG | 3137 | CG13124-RG | 1267..2037 | 17..787 | 3840 | 99.9 | Plus |
CG13124-RF | 2977 | CG13124-RF | 1107..1877 | 17..787 | 3840 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9904827..9905053 | 634..408 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 9905138..9905291 | 408..255 | 770 | 100 | Minus |
2L | 23513712 | 2L | 9904606..9904758 | 787..635 | 750 | 99.3 | Minus |
2L | 23513712 | 2L | 9906033..9906173 | 157..17 | 705 | 100 | Minus |
2L | 23513712 | 2L | 9905875..9905974 | 254..155 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:55:44 has no hits.
BO18047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:31 Download gff for
BO18047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-PB | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:14 Download gff for
BO18047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RF | 1103..1877 | 9..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:12 Download gff for
BO18047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RF | 1103..1877 | 9..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:12 Download gff for
BO18047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9904606..9904758 | 635..787 | 99 | <- | Minus |
2L | 9904827..9905052 | 409..634 | 100 | <- | Minus |
2L | 9905138..9905291 | 255..408 | 100 | <- | Minus |
2L | 9905875..9905971 | 158..254 | 100 | <- | Minus |
2L | 9906033..9906177 | 9..157 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:14 Download gff for
BO18047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9904606..9904758 | 635..787 | 99 | <- | Minus |
arm_2L | 9904827..9905052 | 409..634 | 100 | <- | Minus |
arm_2L | 9905138..9905291 | 255..408 | 100 | <- | Minus |
arm_2L | 9905875..9905971 | 158..254 | 100 | <- | Minus |
arm_2L | 9906033..9906177 | 9..157 | 97 | | Minus |
BO18047.complete Sequence
1564 bp assembled on 2006-10-11
GenBank Submission: FJ634296
> BO18047.complete
GAAGTTATCAGTCGACATGGCCGAAAAGGTGGAACTACTGGCCCAGGCCA
GCATGAATGGCCAACAGAATGATACGCGGAAGGTGCGCAAATCACCGGAA
TTTCAGCCCGGCGTTATCTCCCGCGAACGCAGCTTTGTGCGCACCTCAAA
TCAACAGAATATCAACAAACGGCGAAGTCTGGCTTTCAACGTACCTGGCA
ATCAGACGGGACAGATGAGGGGCAAACCAGCCATGGATATCTACAGGCCT
CCCAATGTGCGCGGAGAGCTAGCCGCTCCAGCCGGTGGTGTCGGTGGTGA
TGGTCCGAATGGTGCTATCGGTGGTGTCGCCAACAAGCTGAACGTCAATG
CCCAGGAGTTCACAATGACAACCAGCTCCGGGGCACCGGCCGAGGCACTC
GGCAACCGTTCGTCGCTAATACTTCCGCTCACCAATGGACCCGGAGTGGG
AGTTGCACCGGGTTTGGGTCCGTACGGAAACGTGAATCGCCGCCAGGCCG
GACACTCCCTCGGCAACATGCCGGGCTTGAAGGCCAACCACCGGTCGATC
CTGGTGACGTATCCAATCAATACCGGTGCCCTCAGCGGTCAGCTGCCGCT
AATGAACTCGCCATCCAGTGGAAATATACTTCACACAACAAATCGTGTAA
AGTTTGCACCTGAGCCCCGAGGTCACAAAGTGGCTTCGCATAATCAGTTT
GGTCAACTAAACAACAACTATGCTCAGCCTTATCAGGCGAATATTAATGG
AGTAGATCCTTACATGAATGGAAATGCACTGCAACGCTCCAAGTCGTTGT
CGTCGGCGGATGCCCTTACTCGTGGAATGGCCGGATTGGGACTAGGTTTG
GGCAACGAGGTGGCCGACATAGGACAGTTCACGCCAGAGATCCAGGCGCT
TATTGACACGGCCCTGGAGGATCCCAATAAACTGAACTCTCGCTGTCTCA
TGGAACTGACATCGCAGTTCATCAAACGCGCGGTGGAGAGTCGCCGTTTT
GCTCTGCCAATATCACGACTGTGTCTGAACATCATTGCCCGGGAGCAGAA
GGAAACGTTTCTCGAGGCGCTCCTCAACACATGCCGTCAGTGGTACCAGG
AGCGTGAGAAGCTGTTGTTTGCCATCCAGGGCATGAAGTCGCCATCACGT
GTCCGATTCACTGCCTTTATGGCCTTCCTTACGGAAATGTTTTGTCAGCT
GAAACGTCGGCAGCTCCAGCTACGCACCCACCACGAGGGCACTCCTCCGC
CACTGGTACTGCTTAGTCTGCTCTCCAAATGTTGCGGGGATTGCGTGCGT
CCACCCATTAGATCACTTTCAGAGATTGAGTGCTTGTTTTATGTTTTGAC
CTGTATTGGCCAGGACATGGAGCAGCAGTTGCCCCAGCAACTGGAGTTAC
TCATGAGTCTGGTTCGCGATGCCTTTTTGAATGCCGGCGAATCTGCGGCC
TCCATTCGGCGCACTCTTCTCCAACTCATCGAGCTGAAGGCCTCCCACTG
GCAGCTACCAGGCAATACGGTTCTTTACTACACGCACACTAACAATGCAA
GCTTTCTAGACCAT
BO18047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-RH | 1533 | CG13124-PH | 1..1530 | 17..1546 | 7650 | 100 | Plus |
CG13124-RG | 1533 | CG13124-PG | 1..1530 | 17..1546 | 7650 | 100 | Plus |
CG13124-RF | 1533 | CG13124-PF | 1..1530 | 17..1546 | 7650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-RH | 3084 | CG13124-RH | 1214..2743 | 17..1546 | 7650 | 100 | Plus |
CG13124-RG | 3137 | CG13124-RG | 1267..2796 | 17..1546 | 7650 | 100 | Plus |
CG13124-RF | 2977 | CG13124-RF | 1107..2636 | 17..1546 | 7650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9904282..9904758 | 1111..635 | 2385 | 100 | Minus |
2L | 23513712 | 2L | 9904827..9905053 | 634..408 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 9903720..9903943 | 1546..1323 | 1120 | 100 | Minus |
2L | 23513712 | 2L | 9904004..9904218 | 1324..1110 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 9905138..9905291 | 408..255 | 770 | 100 | Minus |
2L | 23513712 | 2L | 9906033..9906173 | 157..17 | 705 | 100 | Minus |
2L | 23513712 | 2L | 9905875..9905974 | 254..155 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:03:59 has no hits.
BO18047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:52 Download gff for
BO18047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RB | 1..1533 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:14 Download gff for
BO18047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RB | 1196..2729 | 9..1546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:43 Download gff for
BO18047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RF | 1107..2636 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:52 Download gff for
BO18047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RB | 1196..2729 | 9..1546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:19 Download gff for
BO18047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13124-RF | 1107..2636 | 17..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:19 Download gff for
BO18047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9904827..9905052 | 409..634 | 100 | <- | Minus |
2L | 9905138..9905291 | 255..408 | 100 | <- | Minus |
2L | 9905875..9905971 | 158..254 | 100 | <- | Minus |
2L | 9906033..9906173 | 17..157 | 100 | | Minus |
2L | 9903718..9903941 | 1325..1548 | 99 | <- | Minus |
2L | 9904004..9904216 | 1112..1324 | 100 | <- | Minus |
2L | 9904282..9904758 | 635..1111 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:43 Download gff for
BO18047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9905875..9905971 | 158..254 | 100 | <- | Minus |
arm_2L | 9906033..9906173 | 17..157 | 100 | | Minus |
arm_2L | 9903718..9903941 | 1325..1548 | 99 | <- | Minus |
arm_2L | 9904004..9904216 | 1112..1324 | 100 | <- | Minus |
arm_2L | 9904282..9904758 | 635..1111 | 100 | <- | Minus |
arm_2L | 9904827..9905052 | 409..634 | 100 | <- | Minus |
arm_2L | 9905138..9905291 | 255..408 | 100 | <- | Minus |
BO18047.pep Sequence
Translation from 16 to 1564
> BO18047.pep
MAEKVELLAQASMNGQQNDTRKVRKSPEFQPGVISRERSFVRTSNQQNIN
KRRSLAFNVPGNQTGQMRGKPAMDIYRPPNVRGELAAPAGGVGGDGPNGA
IGGVANKLNVNAQEFTMTTSSGAPAEALGNRSSLILPLTNGPGVGVAPGL
GPYGNVNRRQAGHSLGNMPGLKANHRSILVTYPINTGALSGQLPLMNSPS
SGNILHTTNRVKFAPEPRGHKVASHNQFGQLNNNYAQPYQANINGVDPYM
NGNALQRSKSLSSADALTRGMAGLGLGLGNEVADIGQFTPEIQALIDTAL
EDPNKLNSRCLMELTSQFIKRAVESRRFALPISRLCLNIIAREQKETFLE
ALLNTCRQWYQEREKLLFAIQGMKSPSRVRFTAFMAFLTEMFCQLKRRQL
QLRTHHEGTPPPLVLLSLLSKCCGDCVRPPIRSLSEIECLFYVLTCIGQD
MEQQLPQQLELLMSLVRDAFLNAGESAASIRRTLLQLIELKASHWQLPGN
TVLYYTHTNNASFLDH
BO18047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13124-PH | 510 | CG13124-PH | 1..510 | 1..510 | 2637 | 100 | Plus |
CG13124-PG | 510 | CG13124-PG | 1..510 | 1..510 | 2637 | 100 | Plus |
CG13124-PF | 510 | CG13124-PF | 1..510 | 1..510 | 2637 | 100 | Plus |
CG13124-PE | 510 | CG13124-PE | 1..510 | 1..510 | 2637 | 100 | Plus |
CG13124-PB | 510 | CG13124-PB | 1..510 | 1..510 | 2637 | 100 | Plus |