Clone Sequence Records
BO18051.5prime Sequence
750 bp (749 high quality bases) assembled on 2006-10-13
> BO18051.5prime
GAAGTTATCAGTCGACATGAAGATCTTCTACGGAGCTCTGCTGGTGCTGG
GCACAGCAATTATTGCCCAGGCGGCTGTTGCCCGTTCCAACGACGAGTCC
GCCCAGGATACCGCCCAACAGTCCAAGTACCGCCTGTTCAAGCAGCCAGT
GCAGATCGAGGCACGCAGCTTACAGCAGCTTATGTCCCTGAAGAACCCAC
CTTGTCCTCCGGCAGCCACCACAACAACATCTGTGCCCACCACAACCACA
GTGACGACCTCACCCACTGGGCCCACTACCACAACTGGAACGTCCACAAC
AACCACCACACCCACGACAACTTCCACAAACCCTACCACCACCGCTCGTC
GCTCATTCAACCAGAACAATTTGGTCGACGGAAACGAGGACGACGACGAT
GAGGAGTTTGACCAGGATGTGGAGGAAGAGAAGTATCTGAAGGACGAGGA
TGAAGTGCAGGAGGACGACCAAGATGATGACGATAACGAGGACGACGGCT
TCCAGCTTGTGGCTCCCAAAGCCTCTGCATCCTCATCCTCTTCTATTCGC
CGTCGCAACAGCGCTAGCAGCTCCTACGGATCGTCCGGCAACAAGAATCT
GTCCAACAGCGAATTGATGCGCGAAATCGAACTGCGCCGGCAGAAGGAAC
TCAACGAGCAGCTGCGCAAGCAGCTTGCCAGCTCCCGTCGCCGTTCCAAC
CAGAGCCGCCGTCGTGCCCTAAACAAACGCCGTCGTGCCCTTCGCCGCCA
BO18051.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-PA | 885 | CG14422-RA | 1..734 | 17..750 | 3670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-RA | 1048 | CG14422-RA | 91..824 | 17..750 | 3670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2943672..2944345 | 77..750 | 3370 | 100 | Plus |
X | 23542271 | X | 2943476..2943536 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 10:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2549 | 213..326 | 111 | 55.3 | Plus |
BO18051.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:34 Download gff for
BO18051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-PA | 1..733 | 17..749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:19 Download gff for
BO18051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 85..823 | 9..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:54 Download gff for
BO18051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 85..823 | 9..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:54 Download gff for
BO18051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2943470..2943536 | 9..77 | 94 | -> | Plus |
X | 2943673..2944344 | 78..749 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:19 Download gff for
BO18051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2837503..2837569 | 9..77 | 94 | -> | Plus |
arm_X | 2837706..2838377 | 78..749 | 100 | | Plus |
BO18051.3prime Sequence
627 bp (611 high quality bases) assembled on 2006-10-13
> BO18051.3prime
ATGGTCTAGAAAGCTTGCGTTGCGGCGACGGTTGGCGCGACGGCGCTGAC
GGAGGCGGCTCAGGCGATTGTTGCGTCGCTGACGGCGGCGGGCGTTGCGA
TGACGGCGGTTCTGGGAGCGACGCTTCTGCTGCTGGCGACGGGACAGGCG
GCGGCGCTTCTGCTGCTGGCGGCGAAGGGCACGACGGCGTTTGTTTAGGG
CACGACGGCGGCTCTGGTTGGAACGGCGACGGGAGCTGGCAAGCTGCTTG
CGCAGCTGCTCGTTGAGTTCCTTCTGCCGGCGCAGTTCGATTTCGCGCAT
CAATTCGCTGTTGGACAGATTCTTGTTGCCGGACGATCCGTAGGAGCTGC
TAGCGCTGTTGCGACGGCGAATAGAAGAGGATGAGGATGCAGAGGCTTTG
GGAGCCACAAGCTGGAAGCCGTCGTCCTCGTTATCGTCATCATCTTGGTC
GTCCTCCTGCACTTCATCCTCGTCCTTCAGATACTTCTCTTCCTCCACAT
CCTGGTCAAACTCCTCATCGTCGTCGTCCTCGTTTCCGTCGACCAAATTG
TTCTGGTTGAATGAGCGACGAGCGGTGGTGGTAGGGTTTGTGGAAGTTGT
CGTGGGTGTGGTGGTTGTTGGGGACGT
BO18051.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-PA | 885 | CG14422-RA | 274..882 | 627..19 | 3020 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-RA | 1048 | CG14422-RA | 364..972 | 627..19 | 3030 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2943885..2944493 | 627..19 | 3030 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:34:10 has no hits.
BO18051.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:34 Download gff for
BO18051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-PA | 274..885 | 16..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:03 Download gff for
BO18051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 364..977 | 13..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:31 Download gff for
BO18051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 364..977 | 13..627 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:31 Download gff for
BO18051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2943885..2944498 | 13..627 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:03 Download gff for
BO18051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2837918..2838531 | 13..627 | 99 | | Minus |
BO18051.complete Sequence
916 bp assembled on 2006-10-11
GenBank Submission: FJ634297
> BO18051.complete
GAAGTTATCAGTCGACATGAAGATCTTCTACGGAGCTCTGCTGGTGCTGG
GCACAGCAATTATTGCCCAGGCGGCTGTTGCCCGTTCCAACGACGAGTCC
GCCCAGGATACCGCCCAACAGTCCAAGTACCGCCTGTTCAAGCAGCCAGT
GCAGATCGAGGCACGCAGCTTACAGCAGCTTATGTCCCTGAAGAACCCAC
CTTGTCCTCCGGCAGCCACCACAACAACATCTGTGCCCACCACAACCACA
GTGACGACCTCACCCACTGGGCCCACTACCACAACTGGAACGTCCACAAC
AACCACCACACCCACGACAACTTCCACAAACCCTACCACCACCGCTCGTC
GCTCATTCAACCAGAACAATTTGGTCGACGGAAACGAGGACGACGACGAT
GAGGAGTTTGACCAGGATGTGGAGGAAGAGAAGTATCTGAAGGACGAGGA
TGAAGTGCAGGAGGACGACCAAGATGATGACGATAACGAGGACGACGGCT
TCCAGCTTGTGGCTCCCAAAGCCTCTGCATCCTCATCCTCTTCTATTCGC
CGTCGCAACAGCGCTAGCAGCTCCTACGGATCGTCCGGCAACAAGAATCT
GTCCAACAGCGAATTGATGCGCGAAATCGAACTGCGCCGGCAGAAGGAAC
TCAACGAGCAGCTGCGCAAGCAGCTTGCCAGCTCCCGTCGCCGTTCCAAC
CAGAGCCGCCGTCGTGCCCTAAACAAACGCCGTCGTGCCCTTCGCCGCCA
GCAGCAGAAGCGCCGCCGCCTGTCCCGTCGCCAGCAGCAGAAGCGTCGCT
CCCAGAACCGCCGTCATCGCAACGCCCGCCGCCGTCAGCGACGCAACAAT
CGCCTGAGCCGCCTCCGTCAGCGCCGTCGCGCCAACCGTCGCCGCAACGC
AAGCTTTCTAGACCAT
BO18051.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-RA | 885 | CG14422-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-RA | 1048 | CG14422-RA | 91..972 | 17..898 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2943672..2944493 | 77..898 | 4110 | 100 | Plus |
X | 23542271 | X | 2943476..2943536 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2549 | 213..326 | 111 | 55.3 | Plus |
BO18051.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:54 Download gff for
BO18051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:16 Download gff for
BO18051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:35 Download gff for
BO18051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 91..972 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:54 Download gff for
BO18051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:52 Download gff for
BO18051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14422-RA | 91..972 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:52 Download gff for
BO18051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2943476..2943536 | 17..77 | 100 | -> | Plus |
X | 2943673..2944493 | 78..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:35 Download gff for
BO18051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2837509..2837569 | 17..77 | 100 | -> | Plus |
arm_X | 2837706..2838526 | 78..900 | 99 | | Plus |
BO18051.pep Sequence
Translation from 16 to 916
> BO18051.pep
MKIFYGALLVLGTAIIAQAAVARSNDESAQDTAQQSKYRLFKQPVQIEAR
SLQQLMSLKNPPCPPAATTTTSVPTTTTVTTSPTGPTTTTGTSTTTTTPT
TTSTNPTTTARRSFNQNNLVDGNEDDDDEEFDQDVEEEKYLKDEDEVQED
DQDDDDNEDDGFQLVAPKASASSSSSIRRRNSASSSYGSSGNKNLSNSEL
MREIELRRQKELNEQLRKQLASSRRRSNQSRRRALNKRRRALRRQQQKRR
RLSRRQQQKRRSQNRRHRNARRRQRRNNRLSRLRQRRRANRRRNASFLDH
BO18051.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14422-PA | 294 | CG14422-PA | 1..294 | 1..294 | 1472 | 100 | Plus |
CG14420-PA | 293 | CG14420-PA | 4..293 | 8..294 | 338 | 33.7 | Plus |
CG14421-PA | 238 | CG14421-PA | 61..232 | 66..293 | 324 | 40.2 | Plus |
CG14423-PA | 305 | CG14423-PA | 36..301 | 14..291 | 174 | 25.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 483..658 | 124..293 | 165 | 23.3 | Plus |