Clone BO18051 Report

Search the DGRC for BO18051

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG14422-RA
Protein status:BO18051.pep: validated full length
Sequenced Size:916

Clone Sequence Records

BO18051.5prime Sequence

750 bp (749 high quality bases) assembled on 2006-10-13

> BO18051.5prime
GAAGTTATCAGTCGACATGAAGATCTTCTACGGAGCTCTGCTGGTGCTGG
GCACAGCAATTATTGCCCAGGCGGCTGTTGCCCGTTCCAACGACGAGTCC
GCCCAGGATACCGCCCAACAGTCCAAGTACCGCCTGTTCAAGCAGCCAGT
GCAGATCGAGGCACGCAGCTTACAGCAGCTTATGTCCCTGAAGAACCCAC
CTTGTCCTCCGGCAGCCACCACAACAACATCTGTGCCCACCACAACCACA
GTGACGACCTCACCCACTGGGCCCACTACCACAACTGGAACGTCCACAAC
AACCACCACACCCACGACAACTTCCACAAACCCTACCACCACCGCTCGTC
GCTCATTCAACCAGAACAATTTGGTCGACGGAAACGAGGACGACGACGAT
GAGGAGTTTGACCAGGATGTGGAGGAAGAGAAGTATCTGAAGGACGAGGA
TGAAGTGCAGGAGGACGACCAAGATGATGACGATAACGAGGACGACGGCT
TCCAGCTTGTGGCTCCCAAAGCCTCTGCATCCTCATCCTCTTCTATTCGC
CGTCGCAACAGCGCTAGCAGCTCCTACGGATCGTCCGGCAACAAGAATCT
GTCCAACAGCGAATTGATGCGCGAAATCGAACTGCGCCGGCAGAAGGAAC
TCAACGAGCAGCTGCGCAAGCAGCTTGCCAGCTCCCGTCGCCGTTCCAAC
CAGAGCCGCCGTCGTGCCCTAAACAAACGCCGTCGTGCCCTTCGCCGCCA

BO18051.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14422-PA 885 CG14422-RA 1..734 17..750 3670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14422-RA 1048 CG14422-RA 91..824 17..750 3670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2943672..2944345 77..750 3370 100 Plus
X 23542271 X 2943476..2943536 17..77 305 100 Plus
Blast to na_te.dros performed 2015-01-31 10:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2436..2549 213..326 111 55.3 Plus

BO18051.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:34 Download gff for BO18051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14422-PA 1..733 17..749 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:19 Download gff for BO18051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 85..823 9..749 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:54 Download gff for BO18051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 85..823 9..749 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:54 Download gff for BO18051.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2943470..2943536 9..77 94 -> Plus
X 2943673..2944344 78..749 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:19 Download gff for BO18051.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2837503..2837569 9..77 94 -> Plus
arm_X 2837706..2838377 78..749 100   Plus

BO18051.3prime Sequence

627 bp (611 high quality bases) assembled on 2006-10-13

> BO18051.3prime
ATGGTCTAGAAAGCTTGCGTTGCGGCGACGGTTGGCGCGACGGCGCTGAC
GGAGGCGGCTCAGGCGATTGTTGCGTCGCTGACGGCGGCGGGCGTTGCGA
TGACGGCGGTTCTGGGAGCGACGCTTCTGCTGCTGGCGACGGGACAGGCG
GCGGCGCTTCTGCTGCTGGCGGCGAAGGGCACGACGGCGTTTGTTTAGGG
CACGACGGCGGCTCTGGTTGGAACGGCGACGGGAGCTGGCAAGCTGCTTG
CGCAGCTGCTCGTTGAGTTCCTTCTGCCGGCGCAGTTCGATTTCGCGCAT
CAATTCGCTGTTGGACAGATTCTTGTTGCCGGACGATCCGTAGGAGCTGC
TAGCGCTGTTGCGACGGCGAATAGAAGAGGATGAGGATGCAGAGGCTTTG
GGAGCCACAAGCTGGAAGCCGTCGTCCTCGTTATCGTCATCATCTTGGTC
GTCCTCCTGCACTTCATCCTCGTCCTTCAGATACTTCTCTTCCTCCACAT
CCTGGTCAAACTCCTCATCGTCGTCGTCCTCGTTTCCGTCGACCAAATTG
TTCTGGTTGAATGAGCGACGAGCGGTGGTGGTAGGGTTTGTGGAAGTTGT
CGTGGGTGTGGTGGTTGTTGGGGACGT

BO18051.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14422-PA 885 CG14422-RA 274..882 627..19 3020 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14422-RA 1048 CG14422-RA 364..972 627..19 3030 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2943885..2944493 627..19 3030 99.8 Minus
Blast to na_te.dros performed on 2015-02-03 06:34:10 has no hits.

BO18051.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:34 Download gff for BO18051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14422-PA 274..885 16..627 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:03 Download gff for BO18051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 364..977 13..627 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:31 Download gff for BO18051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 364..977 13..627 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:31 Download gff for BO18051.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2943885..2944498 13..627 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:03 Download gff for BO18051.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2837918..2838531 13..627 99   Minus

BO18051.complete Sequence

916 bp assembled on 2006-10-11

GenBank Submission: FJ634297

> BO18051.complete
GAAGTTATCAGTCGACATGAAGATCTTCTACGGAGCTCTGCTGGTGCTGG
GCACAGCAATTATTGCCCAGGCGGCTGTTGCCCGTTCCAACGACGAGTCC
GCCCAGGATACCGCCCAACAGTCCAAGTACCGCCTGTTCAAGCAGCCAGT
GCAGATCGAGGCACGCAGCTTACAGCAGCTTATGTCCCTGAAGAACCCAC
CTTGTCCTCCGGCAGCCACCACAACAACATCTGTGCCCACCACAACCACA
GTGACGACCTCACCCACTGGGCCCACTACCACAACTGGAACGTCCACAAC
AACCACCACACCCACGACAACTTCCACAAACCCTACCACCACCGCTCGTC
GCTCATTCAACCAGAACAATTTGGTCGACGGAAACGAGGACGACGACGAT
GAGGAGTTTGACCAGGATGTGGAGGAAGAGAAGTATCTGAAGGACGAGGA
TGAAGTGCAGGAGGACGACCAAGATGATGACGATAACGAGGACGACGGCT
TCCAGCTTGTGGCTCCCAAAGCCTCTGCATCCTCATCCTCTTCTATTCGC
CGTCGCAACAGCGCTAGCAGCTCCTACGGATCGTCCGGCAACAAGAATCT
GTCCAACAGCGAATTGATGCGCGAAATCGAACTGCGCCGGCAGAAGGAAC
TCAACGAGCAGCTGCGCAAGCAGCTTGCCAGCTCCCGTCGCCGTTCCAAC
CAGAGCCGCCGTCGTGCCCTAAACAAACGCCGTCGTGCCCTTCGCCGCCA
GCAGCAGAAGCGCCGCCGCCTGTCCCGTCGCCAGCAGCAGAAGCGTCGCT
CCCAGAACCGCCGTCATCGCAACGCCCGCCGCCGTCAGCGACGCAACAAT
CGCCTGAGCCGCCTCCGTCAGCGCCGTCGCGCCAACCGTCGCCGCAACGC
AAGCTTTCTAGACCAT

BO18051.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14422-RA 885 CG14422-PA 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14422-RA 1048 CG14422-RA 91..972 17..898 4410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2943672..2944493 77..898 4110 100 Plus
X 23542271 X 2943476..2943536 17..77 305 100 Plus
Blast to na_te.dros performed 2014-11-27 14:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2436..2549 213..326 111 55.3 Plus

BO18051.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:54 Download gff for BO18051.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:16 Download gff for BO18051.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:35 Download gff for BO18051.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 91..972 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:54 Download gff for BO18051.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 1..885 17..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:52 Download gff for BO18051.complete
Subject Subject Range Query Range Percent Splice Strand
CG14422-RA 91..972 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:52 Download gff for BO18051.complete
Subject Subject Range Query Range Percent Splice Strand
X 2943476..2943536 17..77 100 -> Plus
X 2943673..2944493 78..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:35 Download gff for BO18051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2837509..2837569 17..77 100 -> Plus
arm_X 2837706..2838526 78..900 99   Plus

BO18051.pep Sequence

Translation from 16 to 916

> BO18051.pep
MKIFYGALLVLGTAIIAQAAVARSNDESAQDTAQQSKYRLFKQPVQIEAR
SLQQLMSLKNPPCPPAATTTTSVPTTTTVTTSPTGPTTTTGTSTTTTTPT
TTSTNPTTTARRSFNQNNLVDGNEDDDDEEFDQDVEEEKYLKDEDEVQED
DQDDDDNEDDGFQLVAPKASASSSSSIRRRNSASSSYGSSGNKNLSNSEL
MREIELRRQKELNEQLRKQLASSRRRSNQSRRRALNKRRRALRRQQQKRR
RLSRRQQQKRRSQNRRHRNARRRQRRNNRLSRLRQRRRANRRRNASFLDH

BO18051.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14422-PA 294 CG14422-PA 1..294 1..294 1472 100 Plus
CG14420-PA 293 CG14420-PA 4..293 8..294 338 33.7 Plus
CG14421-PA 238 CG14421-PA 61..232 66..293 324 40.2 Plus
CG14423-PA 305 CG14423-PA 36..301 14..291 174 25.8 Plus
CG2839-PA 826 CG2839-PA 483..658 124..293 165 23.3 Plus