Clone Sequence Records
BO18052.3prime Sequence
815 bp (727 high quality bases) assembled on 2006-10-13
> BO18052.3prime
ATGGTCTAGAAAGCTTGCACGTTTCACCCCGAACAGATTCGGTATGGACT
TGATCTTCTTGCGCGAGCAGTTCAGATAATCCTTATACATATCGGATCGC
AGGTACCTGGAGTACGAGTCGCTCTTCATCAGGTGATATACATGCGAGGC
GGCCACATCGAAGCACCAACGATTGGGGCCACTTGGCGAGTTGACCGCCT
CGCGGGCCAGCTCCACCGACTTGGAGTCCACGTTGACCGGACAGGGCGCC
TCGGGGGCGAGGAACTCCTGCCATATCTTCTGGATCGCCTCCTTGATCTC
CGACTGCGGCAGCGCCTTCATCTCCTGCACCGATTCCCAGAATTTGAGAT
TTTCGCCGCTGTACTCCTTCTCCAAGAACTTGGTGAACTGCTCGCGTCCA
ATGGCATCGTTCAGTAACTCCCGCAAACTGAATGCCCAGCGCTTCACGCG
CCGCACAGGAACTTCTTTGCTATTTTTCTCCGTATCCCACATCTCGGTGC
TGTCTGTTTGCCAAGGATTCGGCAGCTCGGGCGAGGTTATAAAGTAATCG
AACTCATTGTACTGATCGTAGTAGGCAACCAAAGCCTCGGCCGCCTTTGA
CACTTTGATTGTGCGACGCTCGAGCTTCTGTTTGCGCAGCGCGATAATCC
GCGTCAGTTGCTCGACGGGATTCTTGGCCAGGGAGGCGCCGGCGGATCCG
GTTCCATGGCTGGAACCACCGCGTCTGTAGGCCTTCTTTATGTCAATCTC
GGGGGTGTTGACGCAGCCGGGCATTGGCCGGTGGACATCCCAGAAGGCCC
GCTCCTGCGAGTCCA
BO18052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9108-PA | 1944 | RSG7-RA | 1145..1941 | 815..19 | 3960 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-RB | 5496 | CG9108-RB | 1771..2567 | 815..19 | 3970 | 99.9 | Minus |
| RSG7-RA | 2777 | CG9108-RA | 1771..2567 | 815..19 | 3970 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16841102..16841426 | 19..343 | 1625 | 100 | Plus |
| X | 23542271 | X | 16841937..16842168 | 584..815 | 1145 | 99.6 | Plus |
| X | 23542271 | X | 16841558..16841685 | 344..471 | 640 | 100 | Plus |
| X | 23542271 | X | 16841757..16841870 | 470..583 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:42:20 has no hits.
BO18052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:35 Download gff for
BO18052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9108-PA | 1146..1944 | 16..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:23 Download gff for
BO18052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 1705..2500 | 19..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:17 Download gff for
BO18052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 1772..2567 | 19..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:17 Download gff for
BO18052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16841757..16841870 | 470..583 | 100 | <- | Plus |
| X | 16841937..16842167 | 584..814 | 99 | | Plus |
| X | 16841102..16841426 | 19..343 | 100 | <- | Plus |
| X | 16841558..16841683 | 344..469 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:23 Download gff for
BO18052.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16735135..16735459 | 19..343 | 100 | <- | Plus |
| arm_X | 16735591..16735716 | 344..469 | 100 | <- | Plus |
| arm_X | 16735790..16735903 | 470..583 | 100 | <- | Plus |
| arm_X | 16735970..16736200 | 584..814 | 99 | | Plus |
BO18052.5prime Sequence
689 bp (688 high quality bases) assembled on 2006-10-13
> BO18052.5prime
GAAGTTATCAGTCGACATGGTAACGATGAACTCGGAGGCGGACAAAACAC
AAGCCACCAATGCCAGCAGCACCGCGGCGCCGGCCAAAACGGACTGCACC
AGCAGCAACAGCAGCGATCCGCTGGCGGTGGCCATTCCGGAGCCACAATC
CGCCACCGCCGTCGTTGGTGGAGGTGCAGGAGGAGCAGCACCCGGCACAG
CCACGCCATCGCCAACACCACTGGCCAATGGCAGTAACAATGGCACTGGG
TCATCGGTCTCACCGGCAGCAACAGGAACAGGAGCAGTAGCCACAGCAGC
AAGTGCTCCAGCAGCAGCAGGCACAACATCGGCATCCCCGCCAGCAAGCA
ACCCAACCACTGCATCCACATCGACAGCCAGCGTTGTTGGAGCCAAGACG
GCAGCGGCCACCACCACATCCTCCTCTTCGGCCACATCCTCGTCGACGGC
GGCGGCGGGCAGCAAGCAGAGCGGCTCTAGCGGCGGACTGCTGACCGTCA
GCGGGAACCACCATCACCACCACCACGCCCACCCACAGCAGTCGGCGGCG
GGTCAATCGGCCGCCCAGCCGCCCCAGCCGCCCACCGCAACCGCCTTAGC
GGTTCCATCGGCGTCGCACCACCAACGCGGCGGAAAGAACGAGGATGCAC
CCAATATCCTAGTGTACAAAAAGATGGAGGCCATCATCG
BO18052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9108-PA | 1944 | RSG7-RA | 1..673 | 17..689 | 3365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-RB | 5496 | CG9108-RB | 627..1299 | 17..689 | 3365 | 100 | Plus |
| RSG7-RA | 2777 | CG9108-RA | 627..1299 | 17..689 | 3365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16843151..16843807 | 673..17 | 3285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:37:02 has no hits.
BO18052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:36 Download gff for
BO18052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9108-PA | 1..673 | 17..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:05 Download gff for
BO18052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 555..1232 | 10..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:00:47 Download gff for
BO18052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 622..1299 | 10..689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:47 Download gff for
BO18052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16842813..16842828 | 674..689 | 100 | <- | Minus |
| X | 16843151..16843812 | 10..673 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:05 Download gff for
BO18052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16736846..16736861 | 674..689 | 100 | <- | Minus |
| arm_X | 16737184..16737845 | 10..673 | 99 | | Minus |
BO18052.complete Sequence
1975 bp assembled on 2006-12-18
GenBank Submission: FJ634298
> BO18052.complete
GAAGTTATCAGTCGACATGGTAACGATGAACTCGGAGGCGGACAAAACAC
AAGCCACCAATGCCAGCAGCACCGCGGCGCCGGCCAAAACGGACTGCACC
AGCAGCAACAGCAGCGATCCGCTGGCGGTGGCCATTCCGGAGCCACAATC
CGCCACCGCCGTCGTTGGTGGAGGTGCAGGAGGAGCAGCACCCGGCACAG
CCACGCCATCGCCAACACCACTGGCCAATGGCAGTAACAATGGCACTGGG
TCATCGGTCTCACCGGCAGCAACAGGAACAGGAGCAGTAGCCACAGCAGC
AAGTGCTCCAGCAGCAGCAGGCACAACATCGGCATCCCCGCCAGCAAGCA
ACCCAACCACTGCATCCACATCGACAGCCAGCGTTGTTGGAGCCAAGACG
GCAGCGGCCACCACCACATCCTCCTCTTCGGCCACATCCTCGTCGACGGC
GGCGGCGGGCAGCAAGCAGAGCGGCTCTAGCGGCGGACTGCTGACCGTCA
GCGGGAACCACCATCACCACCACCACGCCCACCCACAGCAGTCGGCGGCG
GGTCAATCGGCCGCCCAGCCGCCCCAGCCGCCCACCGCAACCGCCTTAGC
GGTTCCATCGGCGTCGCACCACCAACGCGGCGGAAAGAACGAGGATGCAC
CCAATATCCTAGTGTACAAAAAGATGGAGGCCATCATCGAGAAGATGCAG
GCGGAGTCGACGGGCGTGGCGGTGCGCACGGTGAAGGCGTTCATGAGCAA
GGTGCCATCGGTGTTCACGGGTGCGGATCTGGTCGCCTGGATTCTCAAGA
ACTTCGACGTGGAGGACGTGACGGAGGCCCTGCACTTTGCCCACCTGCTC
AGCTCGCATGGGTACATATTTCCCATCGATGATCATGCGCTGACCGTCAA
AAATGACGGCACCTTCTACAGATTCCAGACGCCCTACTTTTGGCCCTCGA
ATTGCTGGGAGCCCGAGAATACGGACTATGCCGTCTACCTTTGCAAGCGC
ACCATGCAGAATAAGACGCGTCTGGAGTTGGCCGACTACGAGGCCGAGAA
TCTGGCCAAGCTGCAGAAGATGTTCTCCAGAAAGTGGGAGTTTATATTCA
TGCAGGCCGAATCGCAGAGCAAAGTGGCCAAGAAGCGGGATAAGCTGGAG
CGGAAGGTGCTGGACTCGCAGGAGCGGGCCTTCTGGGATGTCCACCGGCC
AATGCCCGGCTGCGTCAACACCACCGAGATTGACATAAAGAAGGCCTACA
GACGCGGTGGTTCCAGCCATGGAACCGGATCCGCCGGCGCCTCCCTGGCC
AAGAATCCCGTCGAGCAACTGACGCGGATTATCGCGCTGCGCAAACAGAA
GCTCGAGCGTCGCACAATCAAAGTGTCAAAGGCGGCCGAGGCTTTGGTTG
CCTACTACGATCAGTACAATGAGTTCGATTACTTTATAACCTCGCCCGAG
CTGCCGAATCCTTGGCAAACAGACAGCACCGAGATGTGGGATACGGAGAA
AAATAGCAAAGAAGTTCCTGTGCGGCGCGTGAAGCGCTGGGCATTCAGTT
TGCGGGAGTTACTGAACGATGCCATTGGACGCGAGCAGTTCACCAAGTTC
TTGGAGAAGGAGTACAGCGGCGAAAATCTCAAATTCTGGGAATCGGTGCA
GGAGATGAAGGCGCTGCCGCAGTCGGAGATCAAGGAGGCGATCCAGAAGA
TATGGCAGGAGTTCCTCGCCCCCGAGGCGCCCTGTCCGGTCAACGTGGAC
TCCAAGTCGGTGGAGCTGGCCCGCGAGGCGGTCAACTCGCCAAGTGGCCC
CAATCGTTGGTGCTTCGATGTGGCCGCCTCGCATGTATATCACCTGATGA
AGAGCGACTCGTACTCCAGGTACCTGCGATCCGATATGTATAAGGATTAT
CTGAACTGCTCGCGCAAGAAGATCAAGTCCATACCGAATCTGTTCGGGGT
GAAACGTGCAAGCTTTCTAGACCAT
BO18052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-RB | 1944 | CG9108-PB | 1..1941 | 17..1957 | 9705 | 100 | Plus |
| RSG7-RA | 1944 | CG9108-PA | 1..1941 | 17..1957 | 9705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-RB | 5496 | CG9108-RB | 627..2567 | 17..1957 | 9705 | 100 | Plus |
| RSG7-RA | 2777 | CG9108-RA | 627..2567 | 17..1957 | 9705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16843151..16843807 | 673..17 | 3285 | 100 | Minus |
| X | 23542271 | X | 16841102..16841426 | 1957..1633 | 1625 | 100 | Minus |
| X | 23542271 | X | 16841937..16842226 | 1392..1103 | 1450 | 100 | Minus |
| X | 23542271 | X | 16842581..16842830 | 921..672 | 1250 | 100 | Minus |
| X | 23542271 | X | 16842332..16842520 | 1106..918 | 945 | 100 | Minus |
| X | 23542271 | X | 16841558..16841685 | 1632..1505 | 640 | 100 | Minus |
| X | 23542271 | X | 16841757..16841870 | 1506..1393 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:12:22 has no hits.
BO18052.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:50 Download gff for
BO18052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 1..1944 | 17..1960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:21 Download gff for
BO18052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 555..2500 | 10..1957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:14 Download gff for
BO18052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 560..2500 | 17..1959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:50 Download gff for
BO18052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 555..2500 | 10..1957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:29 Download gff for
BO18052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 627..2567 | 17..1959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:29 Download gff for
BO18052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16841099..16841426 | 1633..1959 | 99 | <- | Minus |
| X | 16841558..16841683 | 1507..1632 | 100 | <- | Minus |
| X | 16841757..16841870 | 1393..1506 | 100 | <- | Minus |
| X | 16841937..16842223 | 1106..1392 | 100 | <- | Minus |
| X | 16842333..16842516 | 922..1105 | 100 | <- | Minus |
| X | 16842581..16842828 | 674..921 | 100 | <- | Minus |
| X | 16843151..16843807 | 17..673 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:14 Download gff for
BO18052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16735790..16735903 | 1393..1506 | 100 | <- | Minus |
| arm_X | 16735132..16735459 | 1633..1959 | 99 | <- | Minus |
| arm_X | 16735591..16735716 | 1507..1632 | 100 | <- | Minus |
| arm_X | 16736614..16736861 | 674..921 | 100 | <- | Minus |
| arm_X | 16735970..16736256 | 1106..1392 | 100 | <- | Minus |
| arm_X | 16736366..16736549 | 922..1105 | 100 | <- | Minus |
| arm_X | 16737184..16737840 | 17..673 | 100 | | Minus |
BO18052.pep Sequence
Translation from 16 to 1975
> BO18052.pep
MVTMNSEADKTQATNASSTAAPAKTDCTSSNSSDPLAVAIPEPQSATAVV
GGGAGGAAPGTATPSPTPLANGSNNGTGSSVSPAATGTGAVATAASAPAA
AGTTSASPPASNPTTASTSTASVVGAKTAAATTTSSSSATSSSTAAAGSK
QSGSSGGLLTVSGNHHHHHHAHPQQSAAGQSAAQPPQPPTATALAVPSAS
HHQRGGKNEDAPNILVYKKMEAIIEKMQAESTGVAVRTVKAFMSKVPSVF
TGADLVAWILKNFDVEDVTEALHFAHLLSSHGYIFPIDDHALTVKNDGTF
YRFQTPYFWPSNCWEPENTDYAVYLCKRTMQNKTRLELADYEAENLAKLQ
KMFSRKWEFIFMQAESQSKVAKKRDKLERKVLDSQERAFWDVHRPMPGCV
NTTEIDIKKAYRRGGSSHGTGSAGASLAKNPVEQLTRIIALRKQKLERRT
IKVSKAAEALVAYYDQYNEFDYFITSPELPNPWQTDSTEMWDTEKNSKEV
PVRRVKRWAFSLRELLNDAIGREQFTKFLEKEYSGENLKFWESVQEMKAL
PQSEIKEAIQKIWQEFLAPEAPCPVNVDSKSVELAREAVNSPSGPNRWCF
DVAASHVYHLMKSDSYSRYLRSDMYKDYLNCSRKKIKSIPNLFGVKRASF
LDH
BO18052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-PB | 647 | CG9108-PB | 1..647 | 1..647 | 3357 | 100 | Plus |
| RSG7-PA | 647 | CG9108-PA | 1..647 | 1..647 | 3357 | 100 | Plus |
| CG42450-PA | 1244 | CG42450-PA | 20..618 | 44..630 | 989 | 36.6 | Plus |
| CG42450-PB | 1280 | CG42450-PB | 20..618 | 44..630 | 989 | 36.6 | Plus |
| loco-PF | 782 | CG5248-PF | 65..189 | 508..634 | 207 | 37.2 | Plus |
