Clone Sequence Records
BO18053.3prime Sequence
269 bp (269 high quality bases) assembled on 2006-10-13
> BO18053.3prime
ATGGTCTAGAAAGCTTGCACGGTAGTAGGCGGCATAGGGGTAGGCGGAGT
AGGCGGACGCATAGGGGTACGTGTAGGCGGAGTAGGCGGCGGCCACTGGA
GCGGTGTATGCCGCGGTGTAGGCAGCCGAGTAAGGAGCAGCTGCCACATA
GGGAGCGGAGTAGGCGCTGTAGGCCAGAGGAGAAGCGAGCACCGCCGGCT
TGGCAGAGACGCAGGCCACGATGGCGAACAGGCACAGAGCGAAGTATTTG
AACATGTCGACTGATAACT
BO18053.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13067-PA | 240 | CG13067-RA | 1..237 | 255..19 | 1185 | 100 | Minus |
CG13067-PB | 624 | CG13067-RB | 397..621 | 243..19 | 1125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13067-RA | 564 | CG13067-RA | 57..295 | 257..19 | 1195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16271425..16271649 | 243..19 | 1125 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:27:07 has no hits.
BO18053.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:37 Download gff for
BO18053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13067-PA | 1..240 | 15..255 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:44 Download gff for
BO18053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13067-RA | 51..299 | 14..263 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:13 Download gff for
BO18053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13067-RA | 51..299 | 14..263 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:13 Download gff for
BO18053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16271425..16271653 | 14..243 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:44 Download gff for
BO18053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16264525..16264753 | 14..243 | 99 | | Minus |
BO18053.5prime Sequence
269 bp (269 high quality bases) assembled on 2006-10-13
> BO18053.5prime
GAAGTTATCAGTCGACATGTTCAAATACTTCGCTCTGTGCCTGTTCGCCA
TCGTGGCCTGCGTCTCTGCCAAGCCGGCGGTGCTCGCTTCTCCTCTGGCC
TACAGCGCCTACTCCGCTCCCTATGTGGCAGCTGCTCCTTACTCGGCTGC
CTACACCGCGGCATACACCGCTCCAGTGGCCGCCGCCTACTCCGCCTACA
CGTACCCCTATGCGTCCGCCTACTCCGCCTACCCCTATGCCGCCTACTAC
CGTGCAAGCTTTCTAGACC
BO18053.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13067-PA | 240 | CG13067-RA | 1..237 | 17..253 | 1185 | 100 | Plus |
CG13067-PB | 624 | CG13067-RB | 397..621 | 29..253 | 1125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13067-RA | 564 | CG13067-RA | 57..295 | 15..253 | 1195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16271425..16271649 | 29..253 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:13:58 has no hits.
BO18053.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:37 Download gff for
BO18053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13067-PA | 1..240 | 17..257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:18 Download gff for
BO18053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13067-RA | 51..299 | 9..258 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:46 Download gff for
BO18053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13067-RA | 51..299 | 9..258 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:46 Download gff for
BO18053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16271425..16271653 | 29..258 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:18 Download gff for
BO18053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16264525..16264753 | 29..258 | 99 | | Plus |
BO18053.complete Sequence
271 bp assembled on 2006-10-11
GenBank Submission: FJ634299
> BO18053.complete
GAAGTTATCAGTCGACATGTTCAAATACTTCGCTCTGTGCCTGTTCGCCA
TCGTGGCCTGCGTCTCTGCCAAGCCGGCGGTGCTCGCTTCTCCTCTGGCC
TACAGCGCCTACTCCGCTCCCTATGTGGCAGCTGCTCCTTACTCGGCTGC
CTACACCGCGGCATACACCGCTCCAGTGGCCGCCGCCTACTCCGCCTACA
CGTACCCCTATGCGTCCGCCTACTCCGCCTACCCCTATGCCGCCTACTAC
CGTGCAAGCTTTCTAGACCAT
BO18053.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13067-RA | 240 | CG13067-PA | 1..237 | 17..253 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13067-RA | 564 | CG13067-RA | 57..295 | 15..253 | 1195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16271425..16271649 | 29..253 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:23:02 has no hits.
BO18053.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:09 Download gff for
BO18053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13067-RA | 1..240 | 17..257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:30 Download gff for
BO18053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13067-RA | 24..272 | 9..258 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:18 Download gff for
BO18053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13067-RA | 64..295 | 22..255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:09 Download gff for
BO18053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13067-RA | 24..272 | 9..258 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:03 Download gff for
BO18053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13067-RA | 64..295 | 22..255 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:03 Download gff for
BO18053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16271425..16271649 | 29..255 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:18 Download gff for
BO18053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16264525..16264749 | 29..255 | 99 | | Plus |
BO18053.pep Sequence
Translation from 16 to 271
> BO18053.pep
MFKYFALCLFAIVACVSAKPAVLASPLAYSAYSAPYVAAAPYSAAYTAAY
TAPVAAAYSAYTYPYASAYSAYPYAAYYRASFLDH
BO18053.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13067-PA | 79 | CG13067-PA | 1..79 | 1..79 | 408 | 100 | Plus |
CG13674-PB | 137 | CG13674-PB | 2..101 | 3..80 | 177 | 47.5 | Plus |
CG13674-PA | 137 | CG13674-PA | 2..101 | 3..80 | 177 | 47.5 | Plus |
CG13051-PA | 83 | CG13051-PA | 1..75 | 1..77 | 176 | 56 | Plus |
CG13069-PA | 97 | CG13069-PA | 1..76 | 1..76 | 175 | 55 | Plus |